BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60980.2
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332347 jgi|Araly1|332347|fgenesh1_pm.C_scaffold_8001690 2235 0.0
> Ahg332347 jgi|Araly1|332347|fgenesh1_pm.C_scaffold_8001690
Length=1380
Score = 2235 bits (1210), Expect = 0.0
Identities = 1328/1385 (96%), Gaps = 7/1385 (1%)
Strand=Plus/Plus
Query 121 ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTG 60
Query 181 GAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCATCGGTTTTATCAAGAT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCACCGGTTTTATCAAGAT 120
Query 241 TCGAGCTTTTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGAGCTTGTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAA 180
Query 301 GCGATCAACGACAAGATTCTGTCGTTGAAATATGAAGACTACACGGCTGAGATAGAAACT 360
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GCGATCAACGATAAGATTCTGTCGTTGAAATATGAAGACTACACAGCTGAGATAGAAACT 240
Query 361 GCTGATGCTCAGGAGTCTCATGAGAGAGGTGTTATTGTGCTGGTTACAGGACGCTTAACC 420
|| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 241 GCGGATGCTCAGGAGTCTCATGAGAGAGGTGCTATTGTGCTGGTTACAGGACATTTAACC 300
Query 421 GGGAACGATAATGTTAGGAAGAAGTTTAGTCAATCTTTTTTCTTGGCTCCACAAGACAAA 480
|||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 301 GGGAACGATAATGTGAGGAAGAAGTTCAGTCAAACTTTTTTCTTGGCTCCACAAGACAAG 360
Query 481 GGATACTTTGTCTTAAACGACGTGTTTCGATTCCTTGAGGAGAAAGAGGTGACTGCACAA 540
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 GGATACTTTGTCTTGAACGACGTGTTTCGATTCCTCGAGGAGAAAGAGGTGACGGCACAA 420
Query 541 GCCCGCTCTGTCCCCATCAATGG-AACCACTAGGGATGTTCAGGCTCCTATTGAACCAGA 599
||||||||||||||||||||||| |||| | ||||||||||||||||| | ||||||||
Sbjct 421 GCCCGCTCTGTCCCCATCAATGGAAACC-CCAGGGATGTTCAGGCTCCCCTGGAACCAGA 479
Query 600 ACGTGTTGTTGTTAGTCACGAGCCCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGA 659
||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGTGTTATTGTTACTAACGAGCTCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGA 539
Query 660 AGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGT 599
Query 720 TGTTGACGTTGAGCCTATTGAACCTCCCACTCAAATAAGTCATAATGAAATCTTATCAGT 779
|||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 600 TGTTGACGTTGAGCCTATCGAACCTGCTACTCAAATAAGTCATAATGAAATCTTATCAGT 659
Query 780 GCCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAG 839
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAG 719
Query 840 TCCAGCACCAACAACACACGTTGCTAGAAACAAGCCAAGACCAGCTCCAGTCAACCAGAA 899
|||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||| ||
Sbjct 720 TCCAGCACCAAC-ACACA--TTGCTCGGAACAAGCCAAGACCAGCTCCAGTCAACCATAA 776
Query 900 GCTGACCGCGCCTCCTGCTGAGCCTGCAGCAAGACCCGAGGCTTCAGCTCATGAGAATGT 959
|| ||||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||
Sbjct 777 GCCAACCGCTCCTCCTGCTAAGCCTGCAGCAGGACCTGAGGCGTCAGCTCATGAGAATGT 836
Query 960 TCCGAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTT 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCCAAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTT 896
Query 1020 GCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAA 956
Query 1080 GCATGAGGGGATTCAAGTCAGAAGCAACAAGCAGCAAGGTTTCTGTTTTGGTTTTGTGGA 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 957 GCATGAGGGGATTCAAGTCAGAAGCAATAAGCAGCAAGGTTTCTGTTTTGGTTTTGTGGA 1016
Query 1140 ATTTGAAACATCTAGCGGAAAGCAAAGTGCCCTCGAGGCCTCACCAGTTACAATTGGAGA 1199
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1017 ATTTGAAACATCTAGCGGAAAGCAGAGTGCGCTTGAGGCCTCACCAGTTACAATTGGAGA 1076
Query 1200 TCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGAGGCAACAATGGAGG 1259
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1077 TCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGCGGCAACAATGGAGG 1136
Query 1260 TAGCAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGCTTCAAAGGAGG 1319
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 TAGTAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGTTTCAAAGGAGG 1196
Query 1320 ACGCGGTGGTGGGGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACC 1379
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACGCGGTAGTGGAGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACC 1256
Query 1380 AAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGGGTTCCTCAAAACGGAGG 1439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1257 AAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGAGTTCCTCAAAACGGAGG 1316
Query 1440 AGGTGGAAGAGGAGGCCGCGGAGAAGGAGGTCGTGGTGGAG-CTCGAGGTGGTGGTTCAT 1498
|||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||
Sbjct 1317 AGGTGGAAGAGGAGGCCGAGGAGAAGGAGGTCGTGGTGG-GTCTCGCGGTGGTGGTTCAT 1375
Query 1499 CTTGA 1503
|||||
Sbjct 1376 CTTGA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5