BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G60980.2 Length=1745 Score E Sequences producing significant alignments: (Bits) Value Ahg332347 jgi|Araly1|332347|fgenesh1_pm.C_scaffold_8001690 2235 0.0 > Ahg332347 jgi|Araly1|332347|fgenesh1_pm.C_scaffold_8001690 Length=1380 Score = 2235 bits (1210), Expect = 0.0 Identities = 1328/1385 (96%), Gaps = 7/1385 (1%) Strand=Plus/Plus Query 121 ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTG 60 Query 181 GAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCATCGGTTTTATCAAGAT 240 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCACCGGTTTTATCAAGAT 120 Query 241 TCGAGCTTTTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAA 300 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGAGCTTGTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAA 180 Query 301 GCGATCAACGACAAGATTCTGTCGTTGAAATATGAAGACTACACGGCTGAGATAGAAACT 360 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 GCGATCAACGATAAGATTCTGTCGTTGAAATATGAAGACTACACAGCTGAGATAGAAACT 240 Query 361 GCTGATGCTCAGGAGTCTCATGAGAGAGGTGTTATTGTGCTGGTTACAGGACGCTTAACC 420 || |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 241 GCGGATGCTCAGGAGTCTCATGAGAGAGGTGCTATTGTGCTGGTTACAGGACATTTAACC 300 Query 421 GGGAACGATAATGTTAGGAAGAAGTTTAGTCAATCTTTTTTCTTGGCTCCACAAGACAAA 480 |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 301 GGGAACGATAATGTGAGGAAGAAGTTCAGTCAAACTTTTTTCTTGGCTCCACAAGACAAG 360 Query 481 GGATACTTTGTCTTAAACGACGTGTTTCGATTCCTTGAGGAGAAAGAGGTGACTGCACAA 540 |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 361 GGATACTTTGTCTTGAACGACGTGTTTCGATTCCTCGAGGAGAAAGAGGTGACGGCACAA 420 Query 541 GCCCGCTCTGTCCCCATCAATGG-AACCACTAGGGATGTTCAGGCTCCTATTGAACCAGA 599 ||||||||||||||||||||||| |||| | ||||||||||||||||| | |||||||| Sbjct 421 GCCCGCTCTGTCCCCATCAATGGAAACC-CCAGGGATGTTCAGGCTCCCCTGGAACCAGA 479 Query 600 ACGTGTTGTTGTTAGTCACGAGCCCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGA 659 ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 480 ACGTGTTATTGTTACTAACGAGCTCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGA 539 Query 660 AGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGT 599 Query 720 TGTTGACGTTGAGCCTATTGAACCTCCCACTCAAATAAGTCATAATGAAATCTTATCAGT 779 |||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 600 TGTTGACGTTGAGCCTATCGAACCTGCTACTCAAATAAGTCATAATGAAATCTTATCAGT 659 Query 780 GCCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAG 839 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAG 719 Query 840 TCCAGCACCAACAACACACGTTGCTAGAAACAAGCCAAGACCAGCTCCAGTCAACCAGAA 899 |||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||| || Sbjct 720 TCCAGCACCAAC-ACACA--TTGCTCGGAACAAGCCAAGACCAGCTCCAGTCAACCATAA 776 Query 900 GCTGACCGCGCCTCCTGCTGAGCCTGCAGCAAGACCCGAGGCTTCAGCTCATGAGAATGT 959 || ||||| ||||||||| ||||||||||| |||| ||||| ||||||||||||||||| Sbjct 777 GCCAACCGCTCCTCCTGCTAAGCCTGCAGCAGGACCTGAGGCGTCAGCTCATGAGAATGT 836 Query 960 TCCGAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTT 1019 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 TCCAAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTT 896 Query 1020 GCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAA 956 Query 1080 GCATGAGGGGATTCAAGTCAGAAGCAACAAGCAGCAAGGTTTCTGTTTTGGTTTTGTGGA 1139 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 957 GCATGAGGGGATTCAAGTCAGAAGCAATAAGCAGCAAGGTTTCTGTTTTGGTTTTGTGGA 1016 Query 1140 ATTTGAAACATCTAGCGGAAAGCAAAGTGCCCTCGAGGCCTCACCAGTTACAATTGGAGA 1199 |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 1017 ATTTGAAACATCTAGCGGAAAGCAGAGTGCGCTTGAGGCCTCACCAGTTACAATTGGAGA 1076 Query 1200 TCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGAGGCAACAATGGAGG 1259 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1077 TCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGCGGCAACAATGGAGG 1136 Query 1260 TAGCAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGCTTCAAAGGAGG 1319 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1137 TAGTAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGTTTCAAAGGAGG 1196 Query 1320 ACGCGGTGGTGGGGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACC 1379 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 ACGCGGTAGTGGAGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACC 1256 Query 1380 AAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGGGTTCCTCAAAACGGAGG 1439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1257 AAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGAGTTCCTCAAAACGGAGG 1316 Query 1440 AGGTGGAAGAGGAGGCCGCGGAGAAGGAGGTCGTGGTGGAG-CTCGAGGTGGTGGTTCAT 1498 |||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||||| Sbjct 1317 AGGTGGAAGAGGAGGCCGAGGAGAAGGAGGTCGTGGTGG-GTCTCGCGGTGGTGGTTCAT 1375 Query 1499 CTTGA 1503 ||||| Sbjct 1376 CTTGA 1380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65477131155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5