BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G60990.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950851 jgi|Araly1|950851|scaffold_802738.1 2366 0.0
> Ahg950851 jgi|Araly1|950851|scaffold_802738.1
Length=1408
Score = 2366 bits (1281), Expect = 0.0
Identities = 1359/1397 (97%), Gaps = 3/1397 (0%)
Strand=Plus/Plus
Query 186 TGAAAAATGGAGGAAGAGAACGAAGTAGTGAAGACGTTTGCAGAGCTTGGTGTGCGTGAG 245
|||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 15 TGAAAAATGGAGGAGGAGAACGAAGTGGTGAAGACGTTTGCGGAACTTGGTGTGCGTGAG 74
Query 246 GAGCTTGTTAAAGCTTGCGAGAGATTGGGATGGAAGAACCCTTCCAAAATTCAAGCCGAA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAGCTTGTTAAAGCTTGCGAGAGATTGGGATGGAAGAACCCTTCCAAAATTCAAGCCGAA 134
Query 306 GCCCTTCCTTTTGCTCTTGAAGGGAAAGATGTAATTGGACTTGCGCAAACCGGTTCTGGT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GCCCTTCCTTTTGCTCTTGAAGGGAAAGATGTAATTGGACTTGCGCAAACCGGTTCTGGT 194
Query 366 AAAACCGGAGCTTTTGCAATTCCTATATTGCAAGCACTACTTGAGTATGTTTATGATTCT 425
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 195 AAAACCGGAGCCTTTGCAATTCCTATATTGCAAGCACTTCTTGAGTATGTTTATGATTCT 254
Query 426 GAGCCTAAGAAAGGACGTAGACCGGATCCTGCTTTCTTCGCTTGTGTTTTATCTCCAACT 485
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 255 GAGCCTAAGAAAGGACGTAGACCTGATCCTGCCTTCTTCGCTTGTGTTTTATCTCCAACT 314
Query 486 CGAGAACTTGCAATCCAGATTGCTGAACAGTTTGAAGCTCTTGGTGCTGATATAAGTCTT 545
||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 315 CGAGAGCTTGCAATCCAGATTGCTGAGCAGTTTGAAGCTCTAGGAGCTGATATAAGTCTT 374
Query 546 AGGTGTGCTGTGCTTGTTGGAGGTATAGACAGGATGCAACAAACTATTGCTCTTGGGAAA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AGGTGTGCTGTGCTTGTTGGAGGTATAGACAGGATGCAACAAACTATTGCTCTTGGGAAA 434
Query 606 CGGCCTCATGTTATTGTTGCAACACCTGGTCGTCTTTGGGATCATATGTCTGATACAAAA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CGGCCTCATGTTATTGTTGCAACACCTGGTCGTCTTTGGGATCATATGTCTGATACAAAA 494
Query 666 GGCTTTTCTCTGAAATCATTGAAATATCTGGTTCTTGATGAAGCAGATAGACTGTTGAAT 725
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 495 GGCTTTTCTCTGAAATCTTTGAAATATCTGGTTCTTGATGAAGCAGATAGACTGCTGAAT 554
Query 726 GAAGATTTTGAGAAATCTCTTAACCAGATTTTGGAAGAGATCCCTCTTGAGCGGAAAACA 785
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 555 GAAGATTTTGAGAAATCTCTTAACCAGATTTTGGAAGAGATCCCTCGTGAACGTAAAACA 614
Query 786 TTTCTTTTTTCAGCGACTATGACTAAAAAGGTTCGAAAACTTCAAAGGGCATGTTTGAGG 845
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TTTCTTTTTTCAGCAACTATGACTAAAAAGGTTCGAAAACTTCAAAGGGCATGTTTGAGG 674
Query 846 AATCCTGTGAAGATTGAAGCTGCCTCCAAATATTCCACTGTCGATACTCTTAAGCAGCAG 905
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 675 AATCCTGTGAAGATTGAAGCTGCCTCCAAATATTCCACAGTCGATACTCTTAAGCAGCAG 734
Query 906 TATCGGTTTGTTGCCGCTAAATACAAGGATTGCTATCTGGTATACATTCTGAGTGAAATG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TATCGGTTTGTTGCCGCTAAATACAAGGATTGCTATCTGGTATACATTCTGAGTGAAATG 794
Query 966 CCTGAATCAACATCTATGATTTTCACCCGAACATGTGATGGTACTCGCTTTCTGGCTTTG 1025
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CCTGAATCAACATCAATGATTTTCACCCGAACATGTGATGGTACTCGCTTTCTGGCTTTG 854
Query 1026 GTGCTTCGGAGCCTTGGTTTTAGAGCTATTCCTATCAGTGGTCAAATGACTCAGTCAAAG 1085
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 855 GTGCTTCGGAGCCTTGGTTTTAGAGCCATTCCTATCAGTGGTCAAATGACACAGTCAAAG 914
Query 1086 AGACTGGGAGCTTTAAATAAGTTCAAAGCAGGGGAATGTAATATCTTGGTTTGTACCGAT 1145
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGACTGGGAGCTTTGAATAAGTTCAAAGCAGGGGAATGTAATATCTTGGTTTGTACCGAT 974
Query 1146 GTGGCTAGTAGAGGGCTCGATATCCCATCAGTTGATGTGGTTATCAATTATGATATTCCC 1205
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 975 GTGGCTAGTAGAGGGCTCGATATCCCATCGGTTGATGTGGTTATCAATTATGATATTCCC 1034
Query 1206 ACAAATTCAAAGGATTACATCCATAGAGTAGGAAGAACCGCTCGTGCTGGACGTTCTGGT 1265
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1035 ACAAATTCAAAGGATTACATCCACAGAGTAGGAAGAACCGCTCGTGCTGGACGTTCTGGT 1094
Query 1266 GTTGGGATATCACTTGTAAACCAGTATGAGCTCGAATGGTATATACAAATAGAAAAACTC 1325
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1095 GTCGGGATATCACTTGTAAACCAGTATGAGCTCGAGTGGTATATACAAATAGAAAAACTC 1154
Query 1326 ATTGGCAAGAAACTACCTGAATATCCCGCTGAGGAAGATGAAGTCTTGTCATTGTTGGAG 1385
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1155 ATTGGCAAGAAACTACCTGAATATCCAGCTGAGGAAGATGAAGTCTTGTCATTGTTGGAG 1214
Query 1386 AGAGTTGCAGAAGCGAAAAAGCTATCTGCAATGAATATGAAAGAATCAGGAGGTAGGAAG 1445
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AGAGTTGCAGAAGCGAAAAAGTTATCTGCAATGAATATGAAAGAATCAGGAGGTAGGAAG 1274
Query 1446 AGAAGGGGAGAAGATGATGAAGAAAGTGAGAGGTTCTTGGGAGGTAACAAGGACAGAGGC 1505
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1275 AGAAGGGGAGAAGATGATGAAGAGAGTGAGAGGTTCTTGGGAGGTAACAAGGATAGAGGC 1334
Query 1506 AACAAGGAAAGAGGTGGTAACAAAGACAAGAAGTCTTCTAAGAAGTTCAAACGATAAAAT 1565
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 AACAAGGACAGAGGT---AACAAAGACAAGAAGTCTTCTAAGAAGTTCAAACGATAAAAT 1391
Query 1566 AGCTCTGTTTTTACTGT 1582
|||||||| ||| |||
Sbjct 1392 GGCTCTGTTGTTATTGT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5