BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61010.1
Length=2852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950854 jgi|Araly1|950854|scaffold_802741.1 3007 0.0
Ahg346243 jgi|Araly1|346243|fgenesh1_pg.C_scaffold_4002585 457 2e-127
> Ahg950854 jgi|Araly1|950854|scaffold_802741.1
Length=1963
Score = 3007 bits (1628), Expect = 0.0
Identities = 1857/1969 (94%), Gaps = 10/1969 (1%)
Strand=Plus/Plus
Query 694 CTCTAGTC-TTTGGTTTTGGTTATGGCAGAGTTTGATTCCAAGGTTCCTGTTTCCGGAAT 752
|||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 1 CTCTAGTCTTTTGGTTTGGGTTATGGCAGAGTTTGAATCCAAGCTTCCTGTTTCCGGGGG 60
Query 753 GAACAATCATGTCTTTGAGGCATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAA 812
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAAATCATGTCTTTGAGGCATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAA 120
Query 813 CAACCTGGATGCCAATTTGAGAAAGCTCCTAAGTGACCTAGAGAT-GCATTTGTCAACAT 871
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 121 CAACCTGGATGCCAACTTGAGAAAGCTCCTAAGTGACCTAGAG-TCGCATTTGTCAACAT 179
Query 872 TTGGGATTGCTGATACCAAAGTTGAAGATGCAGGATTCTCTGAGATCAAGAAGAGATTCA 931
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TTGGGATTGCTGATACCAAAGTTGAAGATGCAGGATTCTCTGAGATCAAGGAGAGATTCA 239
Query 932 AAGAAGCTGTGAAGAGAATCCGCAGTTGGGAGACAAACCAGTCGACGATGTTT-GAAGCT 990
||||||||||||||| |||||||||| ||||||| ||||| |||||||| ||| ||||||
Sbjct 240 AAGAAGCTGTGAAGAAAATCCGCAGTAGGGAGACTAACCAATCGACGAT-TTTGGAAGCT 298
Query 991 GGTCTGTCTGAAGCTGATCAGTTCTTTCAAGCCCTGTATGACGTTCAAACAGTTCTTGTG 1050
|||||||||| ||| |||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 299 GGTCTGTCTGCAGCAAATCAATTCTTTCAAGCCCTGTATGAAGTTCAATCAGTTCTTGTG 358
Query 1051 GGTTTCAAAGCTTTGCCCATGAAAACTAACCAGATGGAGAAAGATGTTTACAACCAAGCT 1110
|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 359 GGTTTCAAAGCTTTACCCATCAAAACTAACCAGAAAGAGAAAGATGTTTACAACCAGGCT 418
Query 1111 ACGGTTGCTCTTGACATCGCGATGTTGAGGCTTGAGAAAGAGCTCTGTGATGTTCTGCAT 1170
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 419 ACGGTTGCTCTTGACATCGCGATGCTGAGGCTTGAGAAAGAGCTCCGTGATGTTCTGCAT 478
Query 1171 CAGCACAAACGGCATGTACAGCCTGATTACTTGGCTGTTAGTTCCCGTAGAAAAGATATT 1230
|||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 479 CAGCACAAACAGCATGTACAGCCTGAATACTTGGCTGTTAGTTCCCATAGAAAGGATATT 538
Query 1231 GTGTACGACGAGTCCTTTGTCTCCCTAGATGATGAAGTTATTGTCGAAGCTTCTTCACAT 1290
|||||||||||||||||||| ||| |||||||||||||| |||| ||||| ||||||||
Sbjct 539 GTGTACGACGAGTCCTTTGTTTCCTTAGATGATGAAGTTGTTGTTGAAGCCTCTTCACAC 598
Query 1291 GAAGATGATGAACAGATATCGGACTTT-TATAATTCTGATTTGGTTGATCCCATCGTACT 1349
||||||||||| |||||||| || ||| |||||||||||||| |||||||||||||| ||
Sbjct 599 GAAGATGATGAGCAGATATCAGA-TTTCTATAATTCTGATTTAGTTGATCCCATCGTCCT 657
Query 1350 TCCTCACATCAAAGCTATTGCAAACGCCATGTTTGCTTGCGAGTATGATCAACCATTCTG 1409
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 TCCTCACATTAAAGCTATTGCAAACACCATGTTTGCTTGCGAGTATGATCAACCATTCTG 717
Query 1410 TGAAGCTTTCATCGGCGTTCAAAGAGAAGCTCTGGAGGAGTATATGGTTACTCTCGAAAT 1469
||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 718 TGAAGCTTTCATCATCGTTCAAAGAGAAGCTCTGGATGAGTATATGGTCACTCTTGAAAT 777
Query 1470 GGAAAGATTCAGCTGCGTTGATGTTCTCAGAATGGACTGGGAGGATTTGAATGGTGCAAT 1529
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 GGAAAGATTCAGCTGCGTTGATGTTCTCAAAATGGACTGGGAGGATTTGAATGGTGCAAT 837
Query 1530 GAGAAAATGGACAAAGGTTGTTAAGATCATTACTCAGGTCTATCTCGCCAGTGAAAAACA 1589
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 GAGAAAATGGACAAGGGTTGTTAAGATCATTACTCAGGTCTATCTCCCCAGTGAAAAACA 897
Query 1590 GCTATGTGATCAGATTTTGGGAGACTTTGAGTCAATTTCTACAGCTTGCTTCATTGAAAT 1649
||| ||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 898 GCTCTGTGAAGAGATCTTGGGAGACTTTGAGTCAATATCTACGGCTTGCTTCATTGAAAT 957
Query 1650 CTCAAAAGATGCAATTCTATCACTCCTCAACTTTGGAGAAGCTGTGGTGCTGAGATCTTG 1709
|||||||||| || || |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 958 CTCAAAAGATACAGTTATATCCCTCCTCAACTTTGGAGAAGCTGTGGCGCTGAGATCTTG 1017
Query 1710 CAAGCCAGAAATGCTTGAGCGCTTCCTTAGTATGTATGAGGTTTCAGCAGAGATTCTCGT 1769
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 CAAGCCAGAAATGCTTGAGCGCTTCCTTAGTATGTATGAGGTTTCAGCAGAGATTCTCTT 1077
Query 1770 GGATGTCGATAACCTCTTCCCCGATGAAACAGGCTCGTCTTTAAGAATTGCATTTCACAA 1829
||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |
Sbjct 1078 GGATGTCGATAACCTCTTCCCGGATGAAACAGGCTCGTTTTTAAGAATTGCATTCCACGA 1137
Query 1830 CCTGTCaaaaaaaCTAGCTGATCATACAACCACAACCTTCTTAAAGTTCAAAGACGCAAT 1889
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1138 CCTGTCAAAAAAACTAGCTGATCATACAACCGCGACCTTCTTAAAGTTCAAAGACGCAAT 1197
Query 1890 AGCCTCAGATGAATCCACACGCCCCTTTCATGGAGGCGGGATTCATCACCTGACCAGGTA 1949
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1198 AGCCTCAGATGAATCCGCACGCCCCTTTCATGGAGGCGGAATTCATCACCTGACTAGGTA 1257
Query 1950 TGTAATGAACTACTTGAAGCTTCTCCCGGAGTATACCGACTCACTAAACTCACTGCTTCA 2009
||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |||||
Sbjct 1258 TGTAATGAACTACTTGAAGCTTCTCCCGGTGTATACCGACACCCTAAACTCACTTCTTCA 1317
Query 2010 GAACATACACGTTGACGACTCCATCCCCGAGAAAACAGGAGAAGATGTCCTCCCTTCGAC 2069
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1318 GAACATACACGTTGACGACTCAATACCCGAGAAAACAGGAGAAGATGTCCTCCCTTCGAC 1377
Query 2070 ATTCTCTCCAATGGCTAGACACCTCAGGTCAATCGTCACAACTCTAGAATCCAGCCTTGA 2129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1378 ATTCTCTCCAATGGCTAGACACCTCAGGTCAATCGTCACAACTCTGGAATCCAGCCTTGA 1437
Query 2130 GCGAAAAGCTCAGCTGTACGCAGACGAAGCACTGAAATCCATTTTCCTGATGAACAACTT 2189
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GCGAAAAGCTCAGCTTTACGCAGACGAAGCACTGAAATCCATTTTCCTGATGAACAACTT 1497
Query 2190 CCGTTACATGGTCCAGAAGGTAAAGGGATCAGAGCTGAGACGCTTGTTTGGAGACGAATG 2249
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 CCGTTACATGGTCCAGAAGGTAAAGGGATCAGAGCTGAGACACTTGTTTGGAGACGAATG 1557
Query 2250 GATCAGGAAGCACATTGCAAGCTACCAATGCAATGTCACTAACTACGAGAGATCCACATG 2309
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 1558 GATCAGGAAGCACATTGCAAGCTACCAACGCAATGTCACAAACTACGAGAGATCCTCATG 1617
Query 2310 GAGCTCCATACTCGCTTTGCTCAGAGACAACAACGACTCTGTAAGAACCCTGAGAGAAAG 2369
|||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1618 GAGCTCTATACTTGCTTTGCTCACAGACAACAACAACTCTGTAAGAACCCTGAGAGAAAG 1677
Query 2370 ATGCAGACTTTTCAGCCTTGCATTTGATGATGTTTACAAGAACCAAACCCGTTGGTCAGT 2429
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1678 ATGCAAACTTTTCAGCCTTGCATTTGATGATGTTTACAAGAACCAAACCCATTGGTCAGT 1737
Query 2430 CCCTGATTCAGAGCTCCGCGATGATCTTCACATCTCGACCTCTGTCAAGGTTGTTCAGTC 2489
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1738 TCCTGATCCAGAGCTCCGCGATGATCTTCACATCTCAACCTCTGTCAAGGTTGTTCAGTC 1797
Query 2490 TTACAGAGGATTTCTTGGAAGAAATGCAGTTCGCATAGGCGAAAAACACATCCGATACAC 2549
|||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||||
Sbjct 1798 TTACAGGGGATTTCTTGGAAGAAATGCGGTTCGTATAGGTGAAAAACATATCCGATACAC 1857
Query 2550 TTGTGAAGACATTGAGAATATGCTCCTTGATCTCTTTGAATGTTTGCCATCTCCAAGATC 2609
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1858 TTGTGAAGACATTGAGAATATGCTCCTTGATCTCTTTGAATGTTCGCCATCTCCGAGATC 1917
Query 2610 ACTGCGCAGCTCTCGTAAGAgatgatgatgatgatgaCTTGAGCCTAAT 2658
| ||||||| ||||||| | || |||||||||||||||| |||||||||
Sbjct 1918 ATTGCGCAGTTCTCGTA-G-GA-GATGATGATGATGACTCGAGCCTAAT 1963
> Ahg346243 jgi|Araly1|346243|fgenesh1_pg.C_scaffold_4002585
Length=432
Score = 457 bits (247), Expect = 2e-127
Identities = 291/312 (93%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 715 ATGGCAGAGTTTGATTCCAAGGTTCCTGTTTCCGGA-ATGAACAATCATGTCTTTGAGGC 773
|||||||||||||| |||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct 1 ATGGCAGAGTTTGAATCCAAGCTTCCTGTTTCCGGAGA-GAAAAATCATGTCTTTGAGGC 59
Query 774 ATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAACAACCTGGATGCCAATTTGAG 833
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 60 ATGTCACCATGTTGTTAAGGCACTGAGGGCATCTGATAATAACCTGGACGCCAATTTGAG 119
Query 834 AAAGCTCCTAAGTGACCTAGAGAT-GCATTTGTCAACATTTGGGATTGCTGATACCAAAG 892
|||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 120 AAAGCTCCTAAGTGACCTAGAG-TCGCATTTGTCAACATTTGGGATTGCTGATACGAAAG 178
Query 893 TTGAAGATGCAGGATTCTCTGAGATCAAGAAGAGATTCAAAGAAGCTGTGAAGAGAATCC 952
| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 179 TGGAAGATGCAGGATTCTCTGAGATCAAGGAGAGATTCAAAGAAGCTATGAAGAGAATCC 238
Query 953 GCAGTTGGGAGACAAACCAGTCGACGATGTTTGAAGCTGGTCTGTCTGAAGCTGATCAGT 1012
| ||||||||||||| |||||||||| |||| || ||||||||||||||||| |||| |
Sbjct 239 GGAGTTGGGAGACAAGCCAGTCGACGGTGTTGGACGCTGGTCTGTCTGAAGCAAATCAAT 298
Query 1013 TCTTTCAAGCCC 1024
||||||||||||
Sbjct 299 TCTTTCAAGCCC 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107643032370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5