BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61030.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358310 jgi|Araly1|358310|fgenesh1_pg.C_scaffold_8002097 1214 0.0
> Ahg358310 jgi|Araly1|358310|fgenesh1_pg.C_scaffold_8002097
Length=984
Score = 1214 bits (657), Expect = 0.0
Identities = 886/986 (90%), Gaps = 58/986 (6%)
Strand=Plus/Plus
Query 64 ATGGCTTTTTTGAGTAAATTCGGGAACATATTGAAGCAGACCACAAACAAGCAACTCAAT 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTTTTGAGTAAATTCGGGAACATATTGAAGCAGACCACAAACAAGCAACTCAAT 60
Query 124 GCTCAGGTTTCTTTATCAAGCCCTTCGCTTTTTCAAGCAATAAGGTGTATGTCATCTTCT 183
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCTCAGGTTTCTTTAACAAGCCCTTCGCTTTTTCAAGCGATAAGGTGTATGTCATCTTCT 120
Query 184 AAGCTCTTTATTGGAGGTATGGCTTATAGCATGGATGAGGATAGCTTAAGAGAAGCTTTC 243
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTCTTCATTGGAGGCATGGCTTATAGCATGGATGAGGATAGCTTAAGAGAAGCTTTC 180
Query 244 ACCAAATACGGTGAAGTTGTCGATACTAGAGTTATTTTGGATCGTGAAACTGGTAGGTCA 303
|||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||
Sbjct 181 ACCAAATACGGTGAAGTTGTTGAAACTAGGGTTATTTTGGATCGTGAAACGGGTAGGTCG 240
Query 304 AGGGGATTTGGATTTGTTACATTCACCTCTTCAGAAGCGGCATCTAGTGCTATCCAGGCT 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AGGGGATTTGGATTTGTTACATTCACCTCTTCAGAAGCGGCCTCTAGTGCTATCCAGGCT 300
Query 364 TTGGATGGCCGGGATCTCCATGGCCGGGTTGTTAAAGTAAACTATGCAAATGATAGAACA 423
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 301 TTGGATGGCCGGGATCTCCATGGCCGGGTCGTTAAAGTAAATTATGCAAATGATAGAACT 360
Query 424 Agtggtggtggttttggaggtggtggctatggaggcggtggtggtggttatggtggtagt 483
|||||||| |||||||||||||||||||| ||||||||||| || |||||||||||| ||
Sbjct 361 AGTGGTGGCGGTTTTGGAGGTGGTGGCTACGGAGGCGGTGGGGGCGGTTATGGTGGTGGT 420
Query 484 ggtggcta-----------c-g--g------a-ggaggtg---ctggtggctacggagg- 518
|||||||| | | | | ||||||| ||||||||||||||||
Sbjct 421 GGTGGCTATGGAGGTGGAACTGCTGGCGGCTATGGAGGTGGTGCTGGTGGCTACGGAGGT 480
Query 519 aa-g-tggtgg---CTATGGAGGCGGTGCTGGTGGCTACGGAGGTAATTCTGGTGGTGGC 573
|| | |||||| ||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 481 AATGCTGGTGGTGGCTATGGAGGTGGTGCTGGTGGCTACGGAGGTAATGCTGCTGGTGGC 540
Query 574 TACGGAGGTAATGCTGCTGGTGGATATGGAGGCAGTGGTGCTGGTGGCTATGGAGGC-GA 632
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 541 TACGGAGGTAATGCTGGTGGTGGCTATGGGGGCAGTGGTGCTGGTGGCTATGGAGGCAG- 599
Query 633 TGCTACTGGT--C-ACGGAGGTG---CT---GGT---GGAGGT--TA-TGG-T-T----C 671
|| | ||||| | | ||||||| || ||| |||||| || ||| | | |
Sbjct 600 TGGTGCTGGTGGCTATGGAGGTGATGCTACTGGTCACGGAGGTGGTAGTGGATATGGTGC 659
Query 672 AAGCGGTGGCTTTGGATCTAGCGGCAACACTTATGGGGAGGGTTCAAGTGCAAGCGCAGG 731
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 660 AAGCGGTGGCTTTGGATCTAGCGGCAACACTTATGGTGAGGGTTCCAGTGCAAGTGCAGG 719
Query 732 TGCTGTTGGTGACTATAATGGAAGTAGTGGTTATGGTAGCGCCAATACTTATGGTAGCAG 791
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGCTGTTGGTGACTATAATGGAAGTAGTGGTTATGGTAGTGCCAATACTTATGGTAGCAG 779
Query 792 CAATGGTGGATTCGCTGGAGACAGCCAGTTTGGAGGAAGCCCTGTTGGCAACAGCTCTCA 851
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 780 TAATGGTGGATTCGCTGGAGATAGCCAGTTTGGAGGAAGCCCTGTTGGCAACAGTTCTCA 839
Query 852 GTTCGGTGGTGACAATACCCAGTTTACTGCTGGTGGCCAATTTGGCGGTGAGGATCAATT 911
|||||||||||||| ||| |||||| ||||||||||||||| |||| ||||||| |||||
Sbjct 840 GTTCGGTGGTGACAGTACTCAGTTTGCTGCTGGTGGCCAATCTGGCAGTGAGGAACAATT 899
Query 912 TGGAAGCATGGAGAAAAGTGAAACGAAGATGGAAGA-TGGACCAATAGGTGGAGAATTCG 970
||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||
Sbjct 900 TGGAAGCATGGAGAAAAGTGAAATGAAGATGGA-GAATGGACCAATAGGTGGAGATTTCG 958
Query 971 AAGATG---TTGCCAAAAGAGCTTGA 993
|||||| |||||||||||||||||
Sbjct 959 AAGATGACATTGCCAAAAGAGCTTGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5