BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61040.1
Length=2435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496258 jgi|Araly1|496258|fgenesh2_kg.8__2074__AT5G61040.1 3022 0.0
Ahg487634 jgi|Araly1|487634|fgenesh2_kg.6__768__AT5G08010.1 154 3e-36
> Ahg496258 jgi|Araly1|496258|fgenesh2_kg.8__2074__AT5G61040.1
Length=2394
Score = 3022 bits (1636), Expect = 0.0
Identities = 1889/2010 (94%), Gaps = 21/2010 (1%)
Strand=Plus/Plus
Query 442 TTAAAGCCCTGAGCTTTCAACTTCTTTCATTGGATTGGTGTTTGAATTGGAATGAAGAAG 501
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 390 TTAAAGCCCTGAGCTTTCAACTTCGTTCATTGGATTGGTGTTTGAATTGGAATGGAGAAG 449
Query 502 GAGAGATTGTACTGTTGTATTTTTGGGTTGCTCTCTTGATTCCTCAAGGCAAGAGAGGAC 561
|||||||| ||||||| | ||||||||||||||||||||||| | |||||||||||||||
Sbjct 450 GAGAGATTTTACTGTTAT-TTTTTGGGTTGCTCTCTTGATTCTTGAAGGCAAGAGAGGAC 508
Query 562 GAAATGGATGTTTGGTTAATCGCAGCGACTGCTGCTACGGGATATATAGCTAAGCAGTTG 621
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 509 GAAATGGATATTTGGTTAATCGCAGCTACTGCTGCTACGGGATATATAGCTAAGCAATTG 568
Query 622 CAGAATGTAACCAAAGGTAAAGATAACGTTCTTGAATCTTCTTCTGAAGATGTGAAGCCA 681
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CAGAATGTAACCAAATGTAAAGATAACGTTCTTGAATCTTCTTCTGAAGATGTGAAGCCA 628
Query 682 GAATCTCCTCCTGGTTGCTTGCTTAGCAGATTAGTAAGAGTCAAAAAGGCTAATGAAAAT 741
|||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 629 GAATCTCCTCCTGGGTGCTTGCTTAGCAGATTGGTAAGAGTCAAGAATGCTAATGAAAAC 688
Query 742 AAGTTTGGGGATGAGAAAATGCTATCAGATGGGGATAA-TCCAGATGCATCTACGAGTGG 800
|| |||||||||||||||||| |||| |||||||| || || |||||||||||||||||
Sbjct 689 AAATTTGGGGATGAGAAAATGATATCGGATGGGGA-AACTCTGGATGCATCTACGAGTGG 747
Query 801 GGA-AAGCTCAGGATATTACGAAACTAACCATTCAGATACTTTGTTCGGTTTGATGCCCG 859
|| || || |||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 748 AGAGAA-TTCGGGATATTACGAAGCTAACCGTTCAGATACTTTGTTCGGTTTGATGCCCG 806
Query 860 AGTTCCCGGAGATGGAAC-TGGGGACTTGGAAAACCAGTGGTAATCTTGTAGGTGACACA 918
||||| | |||||||||| | |||| |||||||||||||| || ||||| ||||||||||
Sbjct 807 AGTTCTCTGAGATGGAACAT-GGGAATTGGAAAACCAGTGCTACTCTTGCAGGTGACACA 865
Query 919 CAGTTGAATTCTTCATTTAGGAGAAACCAGCGGTTCAGGCGATTAATCAAACCTTTGAGT 978
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 866 CAGTTGAATTCTTTATTTAGGAGAAACCAGCGGTTCAGGCGATTAGCCAAACCTTTGAGT 925
Query 979 TCGATGGATAGCTGCTTAATGTCTCGGTTTCATAGAGAACAAATGACCATAGAAGATTAC 1038
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 926 TCGATGGATAGCTGCTTAATGTCTCGGTTTCATAGAGAACAAATGACCATGGAAGATTAC 985
Query 1039 ATGACTAGCCCATTTCCATCACCTCACGCTTCAGTTTCAAGGCCATTACTTGTCACTGAT 1098
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 986 ATGACTAGCCCATTTCCATCGCCACACGCTTCAGTTTCAAGGCCATTACTTGTGACTGAT 1045
Query 1099 GGTACTCGAGTAATTAGCAAGAGTGCTGCAGATTCTTTGTGGCTGAGCCAACATATTGTT 1158
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1046 GGTACTCAAGTAATTAGCAAGAGCGCTGCAGATTCTTTGTGGCTGAGCCAACATGTTATT 1105
Query 1159 CTCAGTGAAGATAAGGCTACATTAAGTTGTGGAGTCCCC-GGAGTGGAGTCTTCGATT-- 1215
|||| ||||||||| ||||| |||||| ||| ||||| || |||| |||||| ||
Sbjct 1106 CTCAATGAAGATAACTCTACACAAAGTTGCGGAATCCCCTGG-TTGGATTCTTCGGTTGA 1164
Query 1216 ------GAG-AGAGTGGGAAATGAGAAGAGCAAGAGTAGAAAACATGGACTAGGTGATGC 1268
||| ||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1165 GAGAAGGAGAAGAGTGGGAAATGAGAAGACCAAGAGTAGAAAACATGGACAAGGTGATGC 1224
Query 1269 AACAATGTTGTTACAAATCGGGATCTCGATTGGCATCATGTCCTCATTTATGGCAAGCCA 1328
|||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1225 AACAATGTTGCTACAAATCGGGATCTCGATTGGCATCATATCCTCGTTCATGGCAAGCCA 1284
Query 1329 AGCCGAAGTGAGCAAAGTCAAACAAGAGCTGAAGCAAACAGAGAACTTGGTGCATGATTT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 AGCCGAAGTGAGCAAAGTCAAACAAGAGCTGAAGCAAACAGAGAACTTGGTGCATGATTT 1344
Query 1389 AGAAGATGAGCTTGAGATGAAAGACACGTTGATAGTGAAGGAGATAGATATTGAAAAGGC 1448
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1345 AGAAGATGAGCTTGAGATGAAAGACTCGTTGATAGTGAAGGAGATAGATATTGAAAAGGC 1404
Query 1449 AGCTGAGAGTTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCGGAACTTGAAAG 1508
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1405 AGCTGACAATTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCTGAACTTGAAAG 1464
Query 1509 GCTAGAAATTAACATGAATTCCTCCAACATTGAGACAAGACTCTCTGATATAATAGAGAT 1568
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1465 GCTAGAAATTAACATGAACTCCTCCAACATTGAGACAAGACTCTCTGATATGATAGAGAT 1524
Query 1569 GGAGCCGGATTGTGAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATCGGGTTAAAGG 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GGAGCCGGATTGTGAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATCGGGTTAAAGG 1584
Query 1629 GAAGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTCCACACCTGAGTC 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 GAAGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTCCACACCTGAGTC 1644
Query 1689 AGGAAACTATGCTGTCTCACCTCGCGAATTGAGCTTGCGGTTGCATAAAGTTATCAATTC 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 AGGAAACTATGCTGTCTCACCTCGCGAATTGAGCTTGCGGTTGCATAAAGTTATCAATTC 1704
Query 1749 ACGTCTTGAGAAACGGATTGGAGAGCTCGAGACTGCACTCCAAGAGAGCCAAAGGAAGGT 1808
||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1705 ACGCCTTGAGAAACGGATTGAAGAGCTCGAGACTGCACTCCAAGAGAGCCAAAGAAAGGT 1764
Query 1809 AGAGCAGCTAGTCATGGAATCAGAAAGCAAGAAGAAGTCATGGTCAAGATTATGGGAAAC 1868
|||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 1765 GGAGCAGCTGGTCATGGAATCAGAGAGCAAGAAGAGGTCATGGTCAAGGTTATGGGAAAC 1824
Query 1869 CCGTGAAGTGATGACCTATAAGAGTGAATCAAAAATCCCAGTTGCTATAGAGCACACCAA 1928
|||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||
Sbjct 1825 TCGTGAAGTGATGACATATAAGAGTGACTCGAATATCCCAGTTGCTATTGAGCACACCAA 1884
Query 1929 GACTAATCTTGCGGAGATGCAACCCCTGGTTATGAACTTAACTGGGGAAGCACTTGATGC 1988
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1885 GACTAATCCTGCTGAGATGCAACCGCTGGTTATGAACTTAACTGGGGAAGCACTTGATGC 1944
Query 1989 ATTCAATGAGTCTTACGACGAATTGATGAAAATAAACGATGACTCGGAAGATGATGATG- 2047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 ATTCAATGAGTCTTACGACGAATTGATGAAAATAAACGATGACTCGGAAGATGATGATGA 2004
Query 2048 -G-TGATTCACCATTGGAGATGCAAGATAGCGGGATTCACCAAGAAGATTTATCTTCAAC 2105
| ||||||||| || ||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 2005 TGGTGATTCACCGTTAGAGATGCAAGAGAGCAGGATTCACCAAGAAGATTTCTCTTCAAC 2064
Query 2106 AAACAAAAGCTCACCTTGGAGCCATCACAAGGATGATTTCAAGGTGCAGGAGCAGGAGCT 2165
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct 2065 AAACAAAAGCTCACCTTGGAGCCATCAGAAGGACGATTTCAAGGTGCAAGAGCAGGAACT 2124
Query 2166 GCTAGACCTTATTGGTATTGAAGACGAAGAAGAAAAAAGCAGTGACTTTGTGAATGAAAT 2225
|||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||
Sbjct 2125 GCTAGACCTTATTGGTATTGAAGACGAAGAAGAAGAAAGCAATGACTTTGAGAGTGAAAT 2184
Query 2226 GGAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTT 2285
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2185 GCAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTT 2244
Query 2286 GAATGCACAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAACATTAGGC 2345
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 GAATGCTCAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAACATTAGGC 2304
Query 2346 AGCATTAGAGTTTTGCGTGGATGGAATTCTTAAGGTCTGGTTAGTGTGTAGGCCACAAGC 2405
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2305 AGCATTAGAGTTTTGCGTGGATGGAATTCTTAAGGTCTGGTTAGTGTGTAGACCACAAGC 2364
Query 2406 AAAGTTGATACAGAGCTCACTTTTTTGGTT 2435
|||||||| ||| ||||||||||||| |||
Sbjct 2365 AAAGTTGAAACAAAGCTCACTTTTTTTGTT 2394
Score = 420 bits (227), Expect = 3e-116
Identities = 320/361 (89%), Gaps = 21/361 (6%)
Strand=Plus/Plus
Query 8 AAGATAAT-AAAAATTAAAACACAGAGCCGTTCGTTTGGCTGATTCGATTGTACCAACTT 66
|||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAGATAATGAAAAA-TAAAACACAGAGCCGTTCGTTTTGCTGATTCGATTGTACCAACTT 59
Query 67 CCGACAAAGATTCCACCTTTTCCGATTGTTCGATTTCTTAGACCTTGAGCTTCTCCATTG 126
||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 CCGACAAAG-----A----TTCCGATTGTTCGATTTCTTATACCTTGAGCTTCTCCATTG 110
Query 127 GTTCATCGATCATTTCTTCAAGC-A-A-AAGTCTCTCTTTTTTCTTTGCAAATTTCGCCC 183
|||||| ||||||||||| |||| | | ||| | || ||||||||||| ||
Sbjct 111 GTTCATTGATCATTTCTTGAAGCTACACAAG---CAAGTTGCAAGTTGCAAATTTCACCT 167
Query 184 AAAGGAAAAGGGTACACGTTGTTACAGCTCCTCACCTTATCTCTGACGGAAAAATCGAAG 243
||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 168 AAAGG-AAAGGGTACACGTTGTTACTGCTCCTCACCTTATCCCTGACGGAAAAATCAAAG 226
Query 244 CTTTCTCTGGGTTTTGCTCAGTAGTAATTCGATTTCCGTATAGTTTTGGTACAAAGTGGA 303
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 227 CTTTCTCTGGGTTTTGCTCAGTAGTAATTCGATTTCCGCATAGTTTTGGTACAAAGTGG- 285
Query 304 AGGGTTTTGGGCATTGCTCTGTGGCCTGATTCCTGCGTTTTTAGGTCTCTCCTTGAGGTT 363
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 286 AGGG-TTTGGGCATTGCTCT-CGACCTGATTCCTGCGTTTTTAGGTCTCTCCTTGAGGTT 343
Query 364 G 364
|
Sbjct 344 G 344
> Ahg487634 jgi|Araly1|487634|fgenesh2_kg.6__768__AT5G08010.1
Length=1814
Score = 154 bits (83), Expect = 3e-36
Identities = 108/120 (90%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 2219 ATGAAATGGAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTC-TCCT 2277
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || || |
Sbjct 1598 ATGAGATGGAGAAGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGATCGTC-T 1656
Query 2278 GTTGTGTTGAATGCACAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAA 2337
| |||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1657 GCTGTGTTAAATGCCCAGAAGATGCTATTTCTCATGGAAGAAACAGAACAAAATCTATAA 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91759400205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5