BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61060.2
Length=2423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950858 jgi|Araly1|950858|scaffold_802745.1 3088 0.0
Ahg887597 jgi|Araly1|887597|Al_scaffold_0299_1 809 0.0
Ahg950859 jgi|Araly1|950859|scaffold_802746.1 734 0.0
Ahg952009 jgi|Araly1|952009|scaffold_29900001.1 327 2e-88
> Ahg950858 jgi|Araly1|950858|scaffold_802745.1
Length=2023
Score = 3088 bits (1672), Expect = 0.0
Identities = 1919/2037 (94%), Gaps = 21/2037 (1%)
Strand=Plus/Plus
Query 59 GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCaaaaaaaT-TGGAGACT 117
||| |||||||| |||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 5 GTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGC-AAAAAGTGTGGAGACG 63
Query 118 GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA 177
| ||||||| |||||| ||||| || |||||||||||||||||||||||||||||| |||
Sbjct 64 GCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGTCTTATTTACGACGAGGCGA 123
Query 178 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAG 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGATCGCATCAGAG 183
Query 238 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGGTTCTTGGTAGTA 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 184 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGCTTCTTGGTAGTA 243
Query 298 GCAAAGCAGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTA 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GCAAAGCGGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTTA 303
Query 358 AGAGTATTAGCACAAAACAGAAAGATTATCGGAGAAACAGGATTGCTTCACAGTTGAATT 417
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 304 AGAGTATTAGTACAAAACAGAAAGATTATCAGCGAAACAGGATTGCTTCACAGTTGAATT 363
Query 418 CGATTTATCTGAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGTTCTGTTGTAA 477
||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 364 CGATTTATCTGAACAGAGGTTCATCTGAAGCAGCATATCTTGCAGCTGGATCTGTTGTAA 423
Query 478 AGTTGGCAGAAAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTTTGCTATTGTCAGGCCCC 537
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 424 AGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTATGCTATTGTCAGGCCCC 483
Query 538 CAGGGCACCATGCTGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTGCCG 597
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||
Sbjct 484 CAGGGCACCATGCTGAGGCAGATGAAGCAATGGGGTTTTGTTTATTCAACAATATAGCCG 543
Query 598 TTGCTGCTAGTTTTTTACTAAACGAAAGACCGGATCTAGGGGTCAAGAAAATTCTGATCG 657
| ||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 544 TCGCTTCTAGTTATTTACTTAACGAAAGACCGGATCTAGGGGTCAAAAAAATTCTGATCG 603
Query 658 TTGATTGGGATGTCCATCACGGAAATGGTACCCAGAAGATGTTTTGGAAAGATCCTCGTG 717
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 604 TTGATTGGGATGTCCATCACGGAAATGGTACACAGAAGATGTTCTGGGAAGATCCTCGTG 663
Query 718 TACTATTTTTCTCTGTTCATAGGCATGAGTATGGGGGTTTCTATCCAGCGGGTGATGATG 777
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 664 TGCTATTTTTCTCAGTTCATAGGCATGAGTATGGGAGTTTCTATCCAGCGGGTGATGATG 723
Query 778 GCGATTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGG 837
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GAGATTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCCATGGG 783
Query 838 ATCAAGGACGATGTGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTG 897
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATCAAGGACGATGCGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGATTCCTG 843
Query 898 TGGCGAGGGAATTTAACCCGGATGTTATTTTTCTTTCAGCTGGATTTGATGCAGCTATTA 957
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 844 TGGCGAGGGAATTTAACCCGGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATTG 903
Query 958 ATGATCCGCTAGGGGGTTGTTGTGTGACCCCATATGGATATTCAGTTATGTTGAAGAAGG 1017
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 904 GTGATCCGCTCGGGGGTTGTCGTGTGACCCCATATGGATATTCAGTTATGTTGAAGAA-- 961
Query 1018 TTGGTGTTGAACTGATGGAGTTTGCACAAGGAAAGATAGTGCTGGCGTTAGAGGGAGGGT 1077
| ||||||||||||||||| |||||||| ||| ||| ||||||||||||||
Sbjct 962 --------G--CTGATGGAGTTTGCACATGGAAAGATTGTGATGGTGTTAGAGGGAGGGT 1011
Query 1078 ACAATCTTGACTCAATTGCAAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGAAGACA 1137
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1012 ACAATCTTGACTCAGTTGCAAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGGAGACA 1071
Query 1138 AACAAATTCAAGGACCTCCGGAAGCATACCCATTCGAGTCGACATGGCGTGTCATACAAG 1197
|||||||||| || || | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1072 AACAAATTCATGGTTCTTCTGAAGCATACCCATTTGAGTCTACATGGCGTGTCATACAAG 1131
Query 1198 CGGTGCGCAAGAGGCTATGCACATATTGGCCTTCACTTGCAGATGAATTATCGTGGAAGC 1257
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1132 CGGTACGCAAGAGGCTATGCGCATATTGGCCTTCACTTGCAGATGAATTATCGTGGAATC 1191
Query 1258 TAATTAATCAGAAAACTCCTACTCCAATCATCCTTATCTCAAGCTCCGACTCTGAAACTG 1317
| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1192 TGATTAATCAGAAAACTCCTACTCCAGTTATCCTTATCTCAAGCTCCGACTCTGAAAATG 1251
Query 1318 AAGACAACGCCCAAGGACTCCTGGATCAAATGTCGAAACTCAGCATTGAAAACC-CTCAA 1376
|||| || |||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1252 AAGATGACCCCCATGGACTCCTGGATCAAATGTCGAAACTCAGCATTGAAAACCAC-CAA 1310
Query 1377 GGTACACTACTTGAAAACCACCAAGTAGA-ACCTGCATCTACATCTTGGAGAGCTGATCT 1435
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1311 GGTACACTACTTGAAAACCACCAAGTAGATA-CTGCATCTACATCTTGGAGAGCTGATCT 1369
Query 1436 CGCAAAGGTTGACGTTTGGTATGCCTCTTTTGGATCCAACATGTGGAAACCAAGGTTTCT 1495
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1370 CGCTAAGGTTGACGTTTGGTATGCCTCTTTTGGATCAAACATGTGGAAACCGAGGTTTCT 1429
Query 1496 TTGCTATATTCAAGGGGGACAGGTCGATGGATTGAAAAAGGTATGTGTTGGCTCAATGGA 1555
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1430 TTGCTATATTCAAGGGGGACAGGTCGATGGAATGAAAAAGACATGTGTTGGCTCAATGGA 1489
Query 1556 TAAAAGTCCACCAAAGGAAACAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCG 1615
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1490 TAAAAGTCCACCAAAGGAAGTAGTGTGGGAAACATTTCCACATAGATTGTTCTTTGGCCG 1549
Query 1616 TGAATCTTCAGTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 TGAATCTTCAGTTGGTTGGGGTGTAGGAGGAGTTGCTTTCACCAACCCCCTTGCTAATCT 1609
Query 1676 CATTGATCAAACTCACATGTGTTTGTACCGTATCACGCTTGAGCAGTTCAATGACGTTCT 1735
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1610 CATTGATCAAACTCACATGTGTTTGTACCGAATCACGCTTGAGCAGTTCAACGACGTTCT 1669
Query 1736 GTCTCAAGAAAATGGTTTGAATGTGGATTCAGATTCTCCGGTCTTTGATCTAGCTGCTTT 1795
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1670 GTCTCAAGAAAATGGCTTGAATGTAGATTCAGATTCTCCGGTCTTTGATCTAGCTTCTTT 1729
Query 1796 GCAGTTAGTAGATAACAAAGGATCCATTTTAGAAGCTCCTTTGAATAGTTGGTATGGAAA 1855
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1730 GCAGTTAGTAGAGAACAAAGGATCCATTTTAGAAGCTGCTTTGAATAGTTGGTATGGAAA 1789
Query 1856 TGTTGTCTGCTTGGGAAAAGAACGCGACATTCCTATACTTACAATGACTTGCACGCTTTC 1915
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1790 TGTTGTCTGCTTGGGGAAAGAACACGACATTCCTATACTTACAATGACATGCACGCTTTC 1849
Query 1916 CGCTGTTGAGAAATTCAAATCCGGTGAGATCCCTATAAGACCTCCTGCAAAAGCTTATGC 1975
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 1850 TGCTGTTGAGAAGTTCAAATCCGGTGAGGTCCCTCTAAGACCTCCTGCAAAAGCCTATGC 1909
Query 1976 CAACACTTTAATAAGGGGACTTGTGGAAGGAGGAAGATTATCTAAAGAAGAAGCTGAGGC 2035
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1910 CAACACTTTAATAAGAGGACTTGTGGAAGGAGGAAGATTCTCTAAAGAAGAAGCTGAGGC 1969
Query 2036 TTACATAGACAAGGCTGTGTCTAAACCTCTCTAGTGTATAATTATTTACTCAGAAAC 2092
|||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 1970 TTACATAGACAATGCTGTGTCTAAGCCTCTCTAGTGTAT--T-ATTTACTCAGAAAC 2023
> Ahg887597 jgi|Araly1|887597|Al_scaffold_0299_1
Length=1731
Score = 809 bits (438), Expect = 0.0
Identities = 542/592 (92%), Gaps = 7/592 (1%)
Strand=Plus/Plus
Query 152 GGTGGGTCTTATTTACGACGAGACGATGTGCAAACACGACACACCTGACGGCGAGGATCA 211
|||||||||| ||| |||||||||||||||||||||||||||||| |||| |||| | |
Sbjct 1 GGTGGGTCTT-GTTATGACGAGACGATGTGCAAACACGACACACCTAACGGTGAGGTTGA 59
Query 212 CCCT-GAGTGTCCCGACCGCATCAGAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTT 270
| | ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct 60 -CGTAGAGTGTCCCGATCGCATCAGATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCA 118
Query 271 CTCAAAGATGTGTGGTTCTTGGTAGTAGCAAAGCAGAAGATAAGCATCTCCAATTGGTTC 330
| ||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||
Sbjct 119 CCCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTC 178
Query 331 ACACAAAGGACCATGTTAATTTAGTTAAGAGTATTAGCACAAAACAGAAAGATTATCGGA 390
|||||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 179 ACACAAAGAAACATGTTAATTTCGTGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGA 238
Query 391 GAAACAGGATTGCTTCACAGTTGAATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCG 450
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 GAAACAGGATTGCTTCAGTGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCG 298
Query 451 CATATCTTGCAGCTGGTTCTGTTGTAAAGT-TGGCAGAAAAAGTTGCAGAAGGAGAGTTA 509
|||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 299 CATATCTTGCAGCTGGATCTGTTGTAAA-TGTGGCAGAGAAAGTTGCAGAAGGAGAGTTA 357
Query 510 GATTGTGGTTTTGCTATTGTCAGGCCCCCAGGGCACCATGCTGAGGCAGATGAAGCCATG 569
|||||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 358 GATTGTGGCTTTGCTATAGTGAGGCCCCCAGGACACCATGCCGAGGCAGATGAAGCCATG 417
Query 570 GGTTTTTGTTTATTCAACAATGTTGCCGTTGCTGCTAGTTTTTTACTAAACGAAAGACCG 629
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 418 GGTTTTTGTTTATTCAACAATGTAGCCGTTGCTGCTAGTTATTTACTAAACGAAAGACCG 477
Query 630 GATCTAGGGGTCAAGAAAATTCTGATCGTTGATTGGGATGTCCATCACGGAAATGGTACC 689
||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 478 GATCTAGATGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACA 537
Query 690 CAGAAGATGTTTTGGAAAGATCCTCGTGTACT-ATTTTTCTCTGTTCATAGG 740
||||||||||| |||||||||||||| ||||| || || |||||||||||||
Sbjct 538 CAGAAGATGTTCTGGAAAGATCCTCGCGTACTGATATT-CTCTGTTCATAGG 588
Score = 510 bits (276), Expect = 2e-143
Identities = 396/451 (88%), Gaps = 20/451 (4%)
Strand=Plus/Plus
Query 754 GTTTCTATCCAGCGGGTGATGATGGCGATTATAACATGGTTGGGGAAGGTCCAGGTGAAG 813
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 635 GTTTCTATCCAGCGGGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTAAAG 694
Query 814 GGTTTAACATAAATGTTCCATGGGATCAAGGACGATGTGGAGATGCAGATTATCTTGCTG 873
||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 695 GGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAGATGCAGATTATCTTGCCG 754
Query 874 CATGGGACCATATCTTGATTCCTGTGGCGAGGGAATTTAA-CCCGGATGTTATTTTTCTT 932
|||||||||||||||||||||||||| | | ||| ||||| |||| || ||||||| |||
Sbjct 755 CATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATCCCG-ATATTATTTTGCTT 813
Query 933 TCAGCTGGATTTGATGCAGCTATTAATGATCCGCTAGGGGGTTGTTGTGTGACCCCATAT 992
||||||||||||||||||||||| ||||||||| |||||||||||||| || ||| ||
Sbjct 814 TCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTTGTTGTGTTACACCAGAT 873
Query 993 GGATATTCAGTTATGTTGAAGAAGGTTGGTGTTGAACTGATGGAGTTTGCACAAGGAAAG 1052
|||||||||||||||||||||||| | || || | |||||||||||||||||
Sbjct 874 GGATATTCAGTTATGTTGAAGAAGCT--------AA-TG--G-AGTTTGCACAAGGAAAG 921
Query 1053 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGACTCAATTG-CAAAGTCTTCACTTGC 1111
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||
Sbjct 922 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCA-TTGGCAAAGTCTTCACTCGC 980
Query 1112 ATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCAAGGACCTCC-GGAAGCATACCCAT 1170
||||||||||||| |||||||||| ||| ||||||| | || | ||| ||||||||||
Sbjct 981 ATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATGTTCTTCTGGA-GCATACCCAT 1039
Query 1171 TCGAGTCGACATGGCGTGTCATACA-AGCGG 1200
| || || ||| |||||||| || | |||||
Sbjct 1040 TAGAATCTACACGGCGTGTCGTA-AGAGCGG 1069
> Ahg950859 jgi|Araly1|950859|scaffold_802746.1
Length=2426
Score = 734 bits (397), Expect = 0.0
Identities = 514/571 (90%), Gaps = 6/571 (1%)
Strand=Plus/Plus
Query 59 GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCaaaaaaaT-TGGAGACT 117
||| |||||||| | ||| | ||| |||| |||||||||||| || |||| ||||||
Sbjct 5 GTCACATCTCCCGGAGATGACAATGACCGGCGAATCTTCCGGC-AAGAAATGCGGAGACG 63
Query 118 GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA 177
||| ||||||| |||| || || || |||||||||||||||||| |||||||||||||||
Sbjct 64 GTGGCGGTAAATTCGCCGGAAAAAGCCAGCGAAAGGTGGGTCTTGTTTACGACGAGACGA 123
Query 178 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGACCGCATCAGA 236
|||||||||||||||||||| |||| |||| | | | | ||||||||||| |||||||||
Sbjct 124 TGTGCAAACACGACACACCTAACGGTGAGGTTGA-CGTAGAGTGTCCCGATCGCATCAGA 182
Query 237 GTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGGTTCTTGGTAGT 296
|||||||||||||||||||||||||||| || | ||||||||||||||||||||| ||
Sbjct 183 TTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCACCCAAAGATGTGTGGTTCTTGGTGGT 242
Query 297 AGCAAAGCAGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGTT 356
|| ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||| ||
Sbjct 243 AGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTCGTG 302
Query 357 AAGAGTATTAGCACAAAACAGAAAGATTATCGGAGAAACAGGATTGCTTCACAGTTGAAT 416
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct 303 AAGAGTATTAGCACAAAACAGAAAGATTCTCGGAGAAACAGGATTGCTTCAGTGTTGGAT 362
Query 417 TCGATTTATCTGAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGTTCTGTTGTA 476
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 TCGATTTATCTTAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGATCTGTTGTA 422
Query 477 AAGT-TGGCAGAAAAAGTTGCAGAAGGAGAGTTAGATTGTGGTTTTGCTATTGTCAGGCC 535
|| | ||||||| ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 423 AA-TGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATAGTGAGGCC 481
Query 536 CCCAGGGCACCATGCTGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTGC 595
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 CCCAGGACACCATGCCGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTAGC 541
Query 596 CGTTGCTGCTAGTTTTTTACTAAACGAAAGA 626
|||||||||||||| ||||||||||||||||
Sbjct 542 CGTTGCTGCTAGTTATTTACTAAACGAAAGA 572
Score = 597 bits (323), Expect = 1e-169
Identities = 468/535 (87%), Gaps = 22/535 (4%)
Strand=Plus/Plus
Query 754 GTTTCTATCCAGCGGGTGATGATGGCGATTATAACATGGTTGGGGAAGGTCCAGGTGAAG 813
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 787 GTTTCTATCCAGCGAGTGATGATGGAGATTATAACATGGTTGGGGAAGGTCCAGGTAAAG 846
Query 814 GGTTTAACATAAATGTTCCATGGGATCAAGGACGATGTGGAGATGCAGATTATCTTGCTG 873
||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 847 GGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAGATGCAGATTATCTTGCCG 906
Query 874 CATGGGACCATATCTTGATTCCTGTGGCGAGGGAATTTAA-CCCGGATGTTATTTTTCTT 932
|||||||||||||||||||||||||| | | ||| ||||| |||| || ||||||| |||
Sbjct 907 CATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATCCCG-ATATTATTTTGCTT 965
Query 933 TCAGCTGGATTTGATGCAGCTATTAATGATCCGCTAGGGGGTTGTTGTGTGACCCCATAT 992
||||||||||||||||||||||| ||||||||| |||||||||||| | || ||| ||
Sbjct 966 TCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTTGTTGTATTACACCAGAT 1025
Query 993 GGATATTCAGTTATGTTGAAGAAGGTTGGTGTTGAACTGATGGAGTTTGCACAAGGAAAG 1052
|||||||||||||||||||||||| | || || | |||||||||||||||||
Sbjct 1026 GGATATTCAGTTATGTTGAAGAAGCT--------AA-TG--G-AGTTTGCACAAGGAAAG 1073
Query 1053 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGACTCAATTG-CAAAGTCTTCACTTGC 1111
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||
Sbjct 1074 ATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCA-TTGGCAAAGTCTTCACTCGC 1132
Query 1112 ATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCAAGGACCTCC-GGAAGCATACCCAT 1170
||||||||||||| |||||||||| ||| ||||||| | || | ||| ||||||||||
Sbjct 1133 ATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATGTTCTTCTGGA-GCATACCCAT 1191
Query 1171 TCGAGTCGACATGGCGTGTCATACA-AGCGGTGCGC-AAGAGGCTATGCACATATTGGCC 1228
| || || ||| ||||||||||| | |||||| ||| || || |||||||||||||||||
Sbjct 1192 TAGAATCTACACGGCGTGTCATA-AGAGCGGTACGCGAA-AGACTATGCACATATTGGCC 1249
Query 1229 TTCACTTGCAGATGAATTATCGTGGAAGCTAATTAATCAGAAAACTCCTACTCCA 1283
||||||||||||||| |||| || ||||| ||| |||||||||||| |||||||
Sbjct 1250 TTCACTTGCAGATGAGCTATCATGTAAGCTGATTGATCAGAAAACTCTTACTCCA 1304
> Ahg952009 jgi|Araly1|952009|scaffold_29900001.1
Length=288
Score = 327 bits (177), Expect = 2e-88
Identities = 206/220 (94%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 59 GTCGCATCTCCCAGTTATGGCTATGGCCGGAGAATCTTCCGGCaaaaaaaT-TGGAGACT 117
||| |||||||| |||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 5 GTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGC-AAAAAGTGTGGAGACG 63
Query 118 GTGACGGTAAAGTCGCGGGGAACAGACAGCGAAAGGTGGGTCTTATTTACGACGAGACGA 177
| ||||||| |||||| ||||| || |||||||||||||| ||||||||||||||| |||
Sbjct 64 GCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGGCTTATTTACGACGAGGCGA 123
Query 178 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGACCGCATCAGAG 237
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 TGTGCAAACACGACACACCTGACGGCGAGGATCACCCTGAGTGTCCCGATCGCATCAGAG 183
Query 238 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG 277
||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91302317265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5