BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61070.1
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950858 jgi|Araly1|950858|scaffold_802745.1 1463 0.0
Ahg887597 jgi|Araly1|887597|Al_scaffold_0299_1 948 0.0
Ahg950859 jgi|Araly1|950859|scaffold_802746.1 902 0.0
Ahg952009 jgi|Araly1|952009|scaffold_29900001.1 235 9e-61
> Ahg950858 jgi|Araly1|950858|scaffold_802745.1
Length=2023
Score = 1463 bits (792), Expect = 0.0
Identities = 1048/1173 (89%), Gaps = 12/1173 (1%)
Strand=Plus/Plus
Query 83 TGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAA-TGCGGAGAG 141
|||| |||||||||| |||| | ||| || | |||||||||||||| ||| || |||||
Sbjct 4 TGTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGCAA-AAAGTGTGGAGAC 62
Query 142 GGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGACC 201
|| ||||| | ||||||||| |||||||||||||||||||||||| |||| |||||| |
Sbjct 63 GGCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGTCTTATTTACGACGAGGCG 122
Query 202 ATGTGCAAACACGACACACCTAACGGTAAGGTTGA-CGTAGAGTGTCCCGATCGTATCAG 260
||||||||||||||||||||| |||| ||| | | | | |||||||||||||| |||||
Sbjct 123 ATGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGATCGCATCAG 181
Query 261 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAGATGTGTGGTTCTTGGTGG 320
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 182 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAGATGTGTGCTTCTTGGTAG 241
Query 321 TAGTAAAGCTGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTAGT 380
||| ||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 242 TAGCAAAGCGGAAGATAAGCATCTCCAATTGGTTCACACAAAGGACCATGTTAATTTAGT 301
Query 381 GAAGAGTATTAGCACAAAAAAGAAAGATTCTCGGAGAAACAAGATTGCTTCACAGTTGGA 440
||||||||||| |||||| ||||||||| || | |||||| |||||||||||||||| |
Sbjct 302 TAAGAGTATTAGTACAAAACAGAAAGATTATCAGCGAAACAGGATTGCTTCACAGTTGAA 361
Query 441 TTCGATTTATCTGAATGGAGGTTCATCTGAAGCTGCATATCTTGCAGCTGGATCTGTTGT 500
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 TTCGATTTATCTGAACAGAGGTTCATCTGAAGCAGCATATCTTGCAGCTGGATCTGTTGT 421
Query 501 AAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTT-TGCTATTGTCAGGC 559
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 422 AAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGG-TTATGCTATTGTCAGGC 480
Query 560 CCCCAGGACACCATGCCGAGTCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTG 619
||||||| |||||||| ||| |||||||||| ||||| |||||||||||||||||| | |
Sbjct 481 CCCCAGGGCACCATGCTGAGGCAGATGAAGCAATGGGGTTTTGTTTATTCAACAATATAG 540
Query 620 CCGTTGCTGCTAGTTTTTTACTAAACGAAAGACCTGATCTAGATGTCAAGAAAATTCTGA 679
|||| ||| |||||| |||||| ||||||||||| ||||||| ||||| ||||||||||
Sbjct 541 CCGTCGCTTCTAGTTATTTACTTAACGAAAGACCGGATCTAGGGGTCAAAAAAATTCTGA 600
Query 680 TTGTCGATTGGGATATCCATCACGGAAATGGTACACAGAAGATGTTCTGGAAAGATTCTC 739
| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 601 TCGTTGATTGGGATGTCCATCACGGAAATGGTACACAGAAGATGTTCTGGGAAGATCCTC 660
Query 740 GCGTACTAATATTCTCTGTTCATAGGCATGA-TCACGGAAGTTTCTATCCATTTGGCGAT 798
| || ||| | ||||| |||||||||||||| | | || |||||||||||| || |||
Sbjct 661 GTGTGCTATTTTTCTCAGTTCATAGGCATGAGT-ATGGGAGTTTCTATCCAGCGGGTGAT 719
Query 799 GATGGAGACTT-TAACATGGTTGGCGAAGGTCCAGGTGAAGGGTTTAACATTAACGTTCC 857
|||||||| || |||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 720 GATGGAGA-TTATAACATGGTTGGGGAAGGTCCAGGTGAAGGGTTTAACATAAATGTTCC 778
Query 858 ATGGGAGCAAGGAGGATGTGGAGATGCAGACTATCTTGCCGTATGGAACCACATCTTGAT 917
|||||| |||||| |||| ||||||||||| |||||||| | |||| |||| ||||||||
Sbjct 779 ATGGGATCAAGGACGATGCGGAGATGCAGATTATCTTGCTGCATGGGACCATATCTTGAT 838
Query 918 CCCTGTGACCAAGGAATTCAAACCAGATATTATTTTGCTTTCAGCTGGATTTGATGCAGC 977
|||||| | | |||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 839 TCCTGTGGCGAGGGAATTTAACCCGGATATTATTTTGCTTTCAGCTGGATTTGATGCAGC 898
Query 978 TATTGGTGATCCGCTTGGGGGTTGTTGTGTTACCCCATATGGATATTCAGTTATGTTGAA 1037
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 899 TATTGGTGATCCGCTCGGGGGTTGTCGTGTGACCCCATATGGATATTCAGTTATGTTGAA 958
Query 1038 GAAGCTGATGGAGTTTGCACATGGAAAGATAGTGCTGGCATTAGAGGGAGGATACAATCT 1097
|||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||
Sbjct 959 GAAGCTGATGGAGTTTGCACATGGAAAGATTGTGATGGTGTTAGAGGGAGGGTACAATCT 1018
Query 1098 TGAGTCA-TTGGGAAAGTCTTCACTCGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAA 1156
||| ||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1019 TGACTCAGTTGC-AAAGTCTTCACTTGCATGTGTCCAAGTTTTGCTTGGAGACAAACAAA 1077
Query 1157 TTCATGGTTCATCTGAAACATACCCATTAGAATCTACACGGCGTGTCATACAAGCGGTAC 1216
|||||||||| |||||| |||||||||| || |||||| |||||||||||||||||||||
Sbjct 1078 TTCATGGTTCTTCTGAAGCATACCCATTTGAGTCTACATGGCGTGTCATACAAGCGGTAC 1137
Query 1217 GCGAGAGACTATGCACATATTGGCCTTCACTTG 1249
|| |||| |||||| ||||||||||||||||||
Sbjct 1138 GCAAGAGGCTATGCGCATATTGGCCTTCACTTG 1170
> Ahg887597 jgi|Araly1|887597|Al_scaffold_0299_1
Length=1731
Score = 948 bits (513), Expect = 0.0
Identities = 564/589 (96%), Gaps = 1/589 (0%)
Strand=Plus/Plus
Query 177 GGTGGGTCTTGTTTATGACGAGACCATGTGCAAACACGACACACCTAACGGTAAGGTTGA 236
||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1 GGTGGGTCTTG-TTATGACGAGACGATGTGCAAACACGACACACCTAACGGTGAGGTTGA 59
Query 237 CGTAGAGTGTCCCGATCGTATCAGAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCAC 296
|||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 60 CGTAGAGTGTCCCGATCGCATCAGATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCAC 119
Query 297 TCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCTGAAGATAAGCATCTCAAATTGGTTCA 356
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 CCAAAGATGTGTGGTTCTTGGTGGTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCA 179
Query 357 CACAAAGAAACATGTTAATTTAGTGAAGAGTATTAGCACAAAAAAGAAAGATTCTCGGAG 416
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CACAAAGAAACATGTTAATTTCGTGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGAG 239
Query 417 AAACAAGATTGCTTCACAGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCTGC 476
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAACAGGATTGCTTCAGTGTTGGATTCGATTTATCTGAATGGAGGTTCATCTGAAGCCGC 299
Query 477 ATATCTTGCAGCTGGATCTGTTGTAAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGA 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 ATATCTTGCAGCTGGATCTGTTGTAAATGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGA 359
Query 537 TTGTGGCTTTGCTATTGTCAGGCCCCCAGGACACCATGCCGAGTCAGATGAAGCCATGGG 596
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 TTGTGGCTTTGCTATAGTGAGGCCCCCAGGACACCATGCCGAGGCAGATGAAGCCATGGG 419
Query 597 TTTTTGTTTATTCAACAATGTTGCCGTTGCTGCTAGTTTTTTACTAAACGAAAGACCTGA 656
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||
Sbjct 420 TTTTTGTTTATTCAACAATGTAGCCGTTGCTGCTAGTTATTTACTAAACGAAAGACCGGA 479
Query 657 TCTAGATGTCAAGAAAATTCTGATTGTCGATTGGGATATCCATCACGGAAATGGTACACA 716
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 480 TCTAGATGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACACA 539
Query 717 GAAGATGTTCTGGAAAGATTCTCGCGTACTAATATTCTCTGTTCATAGG 765
||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 540 GAAGATGTTCTGGAAAGATCCTCGCGTACTGATATTCTCTGTTCATAGG 588
Score = 826 bits (447), Expect = 0.0
Identities = 712/833 (85%), Gaps = 46/833 (6%)
Strand=Plus/Plus
Query 762 TAGGCATGATCACGGAAGTTTCTATCCATTTGGCGATGATGGAGACTT-TAACATGGTTG 820
|||| ||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 618 TAGGTATGATCACGGAAGTTTCTATCCAGCGGGTGATGATGGAGA-TTATAACATGGTTG 676
Query 821 GCGAAGGTCCAGGTGAAGGGTTTAACATTAACGTTCCATGGGAGCAAGGAGGATGTGGAG 880
| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 677 GGGAAGGTCCAGGTAAAGGGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGAG 736
Query 881 ATGCAGACTATCTTGCCGTATGGAACCACATCTTGATCCCTGTGACCAAGGAATTCAAAC 940
||||||| |||||||||| |||| |||| |||||||| |||||||| ||||| || || |
Sbjct 737 ATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAATC 796
Query 941 CAGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATTGGTGATCCGCTTGGGGGTT 1000
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 797 CCGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGTT 856
Query 1001 GTTGTGTTACCCCATATGGATATTCAGTTATGTTGAAGAAGCTGATGGAGTTTGCACATG 1060
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 857 GTTGTGTTACACCAGATGGATATTCAGTTATGTTGAAGAAGCTAATGGAGTTTGCACAAG 916
Query 1061 GAAAGATAGTGCTGGCATTAGAGGGAGGATACAATCTTGAGTCATTGGGAAAGTCTTCAC 1120
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 917 GAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCATTGGCAAAGTCTTCAC 976
Query 1121 TCGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCA-TGGTTCATCTGAAACATAC 1179
||||||||||||||||| |||||||||| ||| |||||| || ||| |||| | |||||
Sbjct 977 TCGCATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATG-TTCTTCTGGAGCATAC 1035
Query 1180 CCATTAGAATCTACACGGCGTGTCATACA-AGCGGT-ACGCGAGAGACT-ATGCACA-TA 1235
|||||||||||||||||||||||| || | ||||| | ||||| || | | ||| |
Sbjct 1036 CCATTAGAATCTACACGGCGTGTCGTA-AGAGCGGAGAATAGAGAG-CTGAGGTACAATG 1093
Query 1236 TTG--GCCTTCACT-TGACGCGTCAATGGCGTCTAATGAGAATTTAAAGAACCCAAGTGC 1292
|| || | | | ||| | | ||| |||||||||||||||||||||||| ||||||
Sbjct 1094 TTTTTGC-TG-ATTCTGATACATTGATGACGTCTAATGAGAATTTAAAGAACCTAAGTGC 1151
Query 1293 AGA-AAGAAACTCC-GCTGACGCCCTCCTTCGTGAAGTGGAAGAGTTAAAGTCTCTAATG 1350
|| || |||| || |||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 1152 GGACAA-AAAC-CCTGCTGACGCTATCCTTCATGAAGTGGAAGAGTTAAAGTCTCTA-TG 1208
Query 1351 G-CTGCCCGAGATGGAGAACTGGAGGCAAGGAGAAAAGAGTTAAAGGCCAAAAATAAGGA 1409
| |||| |||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1209 GGCTGCACGAGATGGAGAATTGGAGGCAAGGAGAAAAGAGTTAAAGGCCAAAAAGATGGA 1268
Query 1410 GCTAGAAGCGAACGAGAAGGAGCTAGAAGCGGGACTAATGTTGATTCGCGCTCGGGAGGA 1469
||||||| | || | | || |||||||| || ||||||| || ||
Sbjct 1269 GCTAGAA---A-CG---------T-G--GC-----TAATGTTGGTTGGCGCTCGAGAAGA 1307
Query 1470 TGTAATCT-GTGGTCTTCATGCAAAAATAGAGAGTTTGCA-GCAGGAGCGAGATGAGGCG 1527
|| | | | ||||||||| ||| ||| ||||||||||| | || ||||||||||||||||
Sbjct 1308 TG-AGTTTCGTGGTCTTCGTGCCAAAGTAGAGAGTTTG-ATGCGGGAGCGAGATGAGGCG 1365
Query 1528 GTAGCGAAAGCTGAACGCATAGATAAGGAACTCCAAGAGGATAGGGCAAGAAG 1580
|||||||||||||| || ||||||||||||||||||| || ||| |||||||
Sbjct 1366 GTAGCGAAAGCTGAGTGCCTAGATAAGGAACTCCAAGAAGAAAGGCCAAGAAG 1418
> Ahg950859 jgi|Araly1|950859|scaffold_802746.1
Length=2426
Score = 902 bits (488), Expect = 0.0
Identities = 544/572 (95%), Gaps = 0/572 (0%)
Strand=Plus/Plus
Query 80 GACTGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAATGCGGAG 139
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GACTGTCACATCTCCCGGAGATGACAATGACCGGCGAATCTTCCGGCAAGAAATGCGGAG 60
Query 140 AGGGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGA 199
| |||| ||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 61 ACGGTGGCGGTAAATTCGCCGGAAAAAGCCAGCGAAAGGTGGGTCTTGTTTACGACGAGA 120
Query 200 CCATGTGCAAACACGACACACCTAACGGTAAGGTTGACGTAGAGTGTCCCGATCGTATCA 259
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 121 CGATGTGCAAACACGACACACCTAACGGTGAGGTTGACGTAGAGTGTCCCGATCGCATCA 180
Query 260 GAGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAGATGTGTGGTTCTTGGTG 319
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 GATTTATCTGGGAGAAGCTTCAGCTCGCCGGGGTCACCCAAAGATGTGTGGTTCTTGGTG 240
Query 320 GTAGTAAAGCTGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTAG 379
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GTAGTAAAGCGGAAGATAAGCATCTCAAATTGGTTCACACAAAGAAACATGTTAATTTCG 300
Query 380 TGAAGAGTATTAGCACAAAAAAGAAAGATTCTCGGAGAAACAAGATTGCTTCACAGTTGG 439
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 301 TGAAGAGTATTAGCACAAAACAGAAAGATTCTCGGAGAAACAGGATTGCTTCAGTGTTGG 360
Query 440 ATTCGATTTATCTGAATGGAGGTTCATCTGAAGCTGCATATCTTGCAGCTGGATCTGTTG 499
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 ATTCGATTTATCTTAATGGAGGTTCATCTGAAGCCGCATATCTTGCAGCTGGATCTGTTG 420
Query 500 TAAAGGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATTGTCAGGC 559
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 421 TAAATGTGGCAGAGAAAGTTGCAGAAGGAGAGTTAGATTGTGGCTTTGCTATAGTGAGGC 480
Query 560 CCCCAGGACACCATGCCGAGTCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTTG 619
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CCCCAGGACACCATGCCGAGGCAGATGAAGCCATGGGTTTTTGTTTATTCAACAATGTAG 540
Query 620 CCGTTGCTGCTAGTTTTTTACTAAACGAAAGA 651
||||||||||||||| ||||||||||||||||
Sbjct 541 CCGTTGCTGCTAGTTATTTACTAAACGAAAGA 572
Score = 669 bits (362), Expect = 0.0
Identities = 450/492 (91%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 762 TAGGCATGATCACGGAAGTTTCTATCCATTTG-GCGATGATGGAGACTT-TAACATGGTT 819
|||| ||||||||||||||||||||||| | | ||||||||||| || ||||||||||
Sbjct 770 TAGGTATGATCACGGAAGTTTCTATCCA-GCGAGTGATGATGGAGA-TTATAACATGGTT 827
Query 820 GGCGAAGGTCCAGGTGAAGGGTTTAACATTAACGTTCCATGGGAGCAAGGAGGATGTGGA 879
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 828 GGGGAAGGTCCAGGTAAAGGGTTTAACATAAACGTTCCATGGGAGCAAGGAGGATGTGGA 887
Query 880 GATGCAGACTATCTTGCCGTATGGAACCACATCTTGATCCCTGTGACCAAGGAATTCAAA 939
|||||||| |||||||||| |||| |||| |||||||| |||||||| ||||| || ||
Sbjct 888 GATGCAGATTATCTTGCCGCATGGGACCATATCTTGATTCCTGTGACTAAGGAGTTTAAT 947
Query 940 CCAGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATTGGTGATCCGCTTGGGGGT 999
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 948 CCCGATATTATTTTGCTTTCAGCTGGATTTGATGCAGCTATCGGTGATCCGCTTGGGGGT 1007
Query 1000 TGTTGTGTTACCCCATATGGATATTCAGTTATGTTGAAGAAGCTGATGGAGTTTGCACAT 1059
|||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1008 TGTTGTATTACACCAGATGGATATTCAGTTATGTTGAAGAAGCTAATGGAGTTTGCACAA 1067
Query 1060 GGAAAGATAGTGCTGGCATTAGAGGGAGGATACAATCTTGAGTCATTGGGAAAGTCTTCA 1119
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1068 GGAAAGATAGTGCTGGCGTTAGAGGGAGGGTACAATCTTGAGTCATTGGCAAAGTCTTCA 1127
Query 1120 CTCGCATGTGTCCAAGTTTTGCTTGAAGACAAACAAATTCA-TGGTTCATCTGAAACATA 1178
|||||||||||||||||| |||||||||| ||| |||||| || ||| |||| | ||||
Sbjct 1128 CTCGCATGTGTCCAAGTTCTGCTTGAAGAAAAAGGAATTCAATG-TTCTTCTGGAGCATA 1186
Query 1179 CCCATTAGAATCTACACGGCGTGTCATACA-AGCGGTACGCGAGAGACTATGCACATATT 1237
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1187 CCCATTAGAATCTACACGGCGTGTCATA-AGAGCGGTACGCGAAAGACTATGCACATATT 1245
Query 1238 GGCCTTCACTTG 1249
||||||||||||
Sbjct 1246 GGCCTTCACTTG 1257
Score = 270 bits (146), Expect = 3e-71
Identities = 274/330 (83%), Gaps = 31/330 (9%)
Strand=Plus/Plus
Query 1258 ATGGCGTCTAATGAGAATTTAAAGAACCCAAGTGCAGA-AAGAAACTCC-GCTGACGCCC 1315
||| |||||||||||||||||||||||| |||||| || || |||| || ||||||||
Sbjct 1677 ATGACGTCTAATGAGAATTTAAAGAACCTAAGTGCGGACAA-AAAC-CCTGCTGACGCTA 1734
Query 1316 TCCTTCGTGAAGTGGAAGAGTTAAAGTCTCTAAT-GGCTGCCCGAGATGGAGAACTGGAG 1374
|||||| |||||||||||||||||||||||| || |||||| |||||||||||| |||||
Sbjct 1735 TCCTTCATGAAGTGGAAGAGTTAAAGTCTCT-ATGGGCTGCACGAGATGGAGAATTGGAG 1793
Query 1375 GCAAGGAGAAAAGAGTTAAAGGCCAAAAATAAGGAGCTAGAAGCGAACGAGAAGGAGCTA 1434
||||||||||||||||||||||||||||| | |||||||||| | || |
Sbjct 1794 GCAAGGAGAAAAGAGTTAAAGGCCAAAAAGATGGAGCTAGAA---A-CG---------T- 1839
Query 1435 GAAGCGGGACTAATGTTGATTCGCGCTCGGGAGGATGTAATCT-GTGGTCTTCATGCAAA 1493
| || |||||||| || ||||||| || |||| | | | ||||||||| ||| ||
Sbjct 1840 G--GC-----TAATGTTGGTTGGCGCTCGAGAAGATG-AGTTTCGTGGTCTTCGTGCCAA 1891
Query 1494 AATAGAGAGTTTGCA-GCAGGAGCGAGATGAGGCGGTAGCGAAAGCTGAACGCATAGATA 1552
| ||||||||||| | || |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1892 AGTAGAGAGTTTG-ATGCGGGAGCGAGATGAGGCGGTAGCGAAAGCTGAGCGCCTAGATA 1950
Query 1553 AGGAACTCCAAGAGGATAGGGCAAGAAGCC 1582
||||||||||||| || ||| |||||||||
Sbjct 1951 AGGAACTCCAAGAAGAAAGGCCAAGAAGCC 1980
Score = 178 bits (96), Expect = 2e-43
Identities = 106/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 655 GATCTAGATGTCAAGAAAATTCTGATTGTCGATTGGGATATCCATCACGGAAATGGTACA 714
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 630 GATCTAGGTGTCAAGAAAATTCTGATTGTTGATTGGGATATCCATCATGGAAATGGTACA 689
Query 715 CAGAAGATGTTCTGGAAAGATTCTCGCGTACTAATATTCTCTGTTCATAGG 765
||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 690 CAGAAGATGTTCTGGAAAGATCCTCGCGTACTGATATTCTCTGTTCATAGG 740
> Ahg952009 jgi|Araly1|952009|scaffold_29900001.1
Length=288
Score = 235 bits (127), Expect = 9e-61
Identities = 191/222 (86%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 83 TGTCACATCTCCCGGATATGACAATGACCAGCGAATCTTCCGGCAAGAAA-TGCGGAGAG 141
|||| |||||||||| |||| | ||| || | |||||||||||||| ||| || |||||
Sbjct 4 TGTCTCATCTCCCGGTTATGGCTATGGCCGGAGAATCTTCCGGCAA-AAAGTGTGGAGAC 62
Query 142 GGTGACGGCAAAGTCGCCGGTAAAAGCCAGCGAAAGGTGGGTCTTGTTTATGACGAGACC 201
|| ||||| | ||||||||| |||||||||||||||||||| ||| |||| |||||| |
Sbjct 63 GGCGACGGTAGAGTCGCCGGGAAAAGCCAGCGAAAGGTGGGGCTTATTTACGACGAGGCG 122
Query 202 ATGTGCAAACACGACACACCTAACGGTAAGGTTGA-CGTAGAGTGTCCCGATCGTATCAG 260
||||||||||||||||||||| |||| ||| | | | | |||||||||||||| |||||
Sbjct 123 ATGTGCAAACACGACACACCTGACGGCGAGGATCACCCT-GAGTGTCCCGATCGCATCAG 181
Query 261 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTCACTCAAAG 302
||||||||||||||||||||||||||||||||| |||||||
Sbjct 182 AGTTATCTGGGAGAAGCTTCAGCTCGCCGGAGTTTCTCAAAG 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81855936505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5