BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61090.1
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496261 jgi|Araly1|496261|fgenesh2_kg.8__2077__AT5G61080.1 1048 0.0
Ahg359504 jgi|Araly1|359504|fgenesh1_pg.C_scaffold_299000002 942 0.0
> Ahg496261 jgi|Araly1|496261|fgenesh2_kg.8__2077__AT5G61080.1
Length=1059
Score = 1048 bits (567), Expect = 0.0
Identities = 647/686 (94%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 1420 AACTCACTAGGACTTGTTCCAGAAACTGCTTCTCAAATTGATA-ATGATTTTGATGATGG 1478
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 376 AACTCACTAGGACTTGTACCAGAAACTGCTTCTCAAATTGATACA-GATTTTGATGATGG 434
Query 1479 GGGTGTTGTTGACATGGACTTAGACAATGAATGCCTGACCCCGCGTGTGGCTCTGAAGCT 1538
|| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct 435 GGATGTTGTTGACATGGACATAGACACTGAATGCCTGACCCCAAGTGTGGCTCTGAAGCT 494
Query 1539 TATTACAGAATCACAAAAAACTCCCTCAAGATCACCGGAGAAGGTGAAGGGAGAAGCAAG 1598
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 495 AATTACAGAATCACAAAACACTCCCTCAAGATCACCAGAGAAGGTGAACAGAGAAACAAG 554
Query 1599 TGTACCTCCTGGTTTCGAGAAGATATGGACACCACCCTTGGTGAAACTTAATATACAAGG 1658
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 555 TTTACCTCCTGGTTTCGAGAAGATATGGACACCACCTTTTGTGAAACTTAATATACAAGG 614
Query 1659 AACATCAAACCCTCTGTCTGATCTAACCAGATCGGCTGGAATAGTGCGTGACCAATCAGG 1718
||| ||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 615 AACTTCAAACCCTCTATCTGATCTATCCGGATCGGCTGGAATAGTGCGTGATCAATCAGG 674
Query 1719 GAAGTGGGTGTTTGGGTACATCAGGTGCCATAAGAGCATCCCTGAAGTCGTAGCTGGGCT 1778
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 675 GAAGTGGGTGTTTGGGTACATCAGGTGCCATAGGAGCATCCCTGAAGTCGCAGCTGGGCT 734
Query 1779 TTTGGCTATATACCAAGGCCTCAAATATCTCTGGGACAGCGGTTTCCGAAGAATCCACTT 1838
||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 735 TTTGGCTATATACCATGGCCTGAAATTTCTGTGGGACAGCGGTTTCCGAAGAATCCACTT 794
Query 1839 GGAGACAACAAGCTTTGAGATCATCAATGCTCTAACAACAAAATCGTCCCTGTTTTGTAA 1898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 795 GGAGACAACAAGCTTTGAGATCATCAATGCTCTAACAACAAGATCGTCCCTGTTTTGTAA 854
Query 1899 AAGTAAAACGCTTCTAGGAG-CGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACA 1957
||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 855 AAGGAAAACGCTTCTGGG-GTCGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACA 913
Query 1958 TTTACCATATCTCCAAAGAACAGAACTCATGTGCAGAATGGTTAGCAAAGAGATCAGAAG 2017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 914 TTTACCATATCTCCAAAGAACAGAACTCGTGTGCAGAATGGTTAGCAAAGAGATCAGAAG 973
Query 2018 AACAGCCTCAAGAATTAGTTTTCTTTGAATACCCTCCTCGAGGCCTTATGGATTTTCTGG 2077
||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||
Sbjct 974 AACAGCCTCAAGAATTAGTTTTCTTCGAATACCCTCCTCGTGGCCTTGTGGATCTTCTGG 1033
Query 2078 AGAAAGACCGCCTTGCAGCTATGTAG 2103
|||||||||||||||||||||| |||
Sbjct 1034 AGAAAGACCGCCTTGCAGCTATATAG 1059
Score = 357 bits (193), Expect = 2e-97
Identities = 211/220 (96%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1015 ATGGATTCTGCCTCGCCGCCTGAGTTTGACTGCGAGTTTTGGTCTAAACCGGCATCCAAT 1074
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCTGCCTCGCCTCCTGAGTTTGACTGCGAGTTTTGGTCTAAACCGGCATCCAAT 60
Query 1075 ATCAGGAGGAAGGCCCTCAGACGTTCAAAGGCAATGCCTGCGTTACTCAAGGTCGAACTG 1134
|||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 61 ATCACAAGGATGGCACTCAGACGTTCAAAGGCAATGCCTGCATTACTCAAGGTCGAATTG 120
Query 1135 CTTCCTACATGCCACATTCTAAATGATGTGTCTGGCAGAAGCCCAACTCTATTGAATGTC 1194
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CTTCCTACATGCCACATTCTGAATGATGTGTCTGGCAGAAGCCCAACGCTATTGAATGTC 180
Query 1195 GAAATGTACCTTTTCCCAGATGAGAAGAAAACAGAAAGGT 1234
||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAATGTACCTTTTCCCAGATGAGAAGAAAACAGAAAGGT 220
> Ahg359504 jgi|Araly1|359504|fgenesh1_pg.C_scaffold_299000002
Length=612
Score = 942 bits (510), Expect = 0.0
Identities = 579/613 (94%), Gaps = 2/613 (0%)
Strand=Plus/Plus
Query 1492 ATGGACTTAGACAATGAATGCCTGACCCCGCGTGTGGCTCTGAAGCTTATTACAGAATCA 1551
|||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 ATGGACATAGACACTGAATGCCTGACCCCAAGTGTGGCTCTGAAGCTAATTACAGAATCA 60
Query 1552 CAAAAAACTCCCTCAAGATCACCGGAGAAGGTGAAGGGAGAAGCAAGTGTACCTCCTGGT 1611
||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 61 CAAAACACTCCCTCAAGATCACCAGAGAAGGTGAACAGAGAAACAAGTTTACCTCCTGGT 120
Query 1612 TTCGAGAAGATATGGACACCACCCTTGGTGAAACTTAATATACAAGGAACATCAAACCCT 1671
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 TTCGAGAAGATATGGACACCACCTTTGGTGAAACTTAATATACAAGGAACTTCAAACCCT 180
Query 1672 CTGTCTGATCTAACCAGATCGGCTGGAATAGTGCGTGACCAATCAGGGAAGTGGGTGTTT 1731
|| ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CTATCTGATCTATCCGGATCGGCTGGAATAGTGCGTGATCAATCAGGGAAGTGGGTGTTT 240
Query 1732 GGGTACATCAGGTGCCATAAGAGCATCCCTGAAGTCGTAGCTGGGCTTTTGGCTATATAC 1791
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GGGTACATCAGGTGCCATAGGAGCATCCCTGAAGTCGCAGCTGGGCTTTTGGCTATATAC 300
Query 1792 CAAGGCCTCAAATATCTCTGGGACAGCGGTTTCCGAAGAATCCACTTGGAGACAACAAGC 1851
|| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATGGCCTGAAATTTCTGTGGGACAGCGGTTTCCGAAGAATCCACTTGGAGACAACAAGC 360
Query 1852 TTTGAGATCATCAATGCTCTAACAACAAAATCGTCCCTGTTTTGTAAAAGTAAAACGCTT 1911
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 361 TTTGAGATCATCAATGCTCTAACAACAAGATCGTCCCTGTTTTGTAAAAGGAAAACGCTT 420
Query 1912 CTAGGAG-CGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACATTTACCATATCTC 1970
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTGGG-GTCGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACATTTACCATATCTC 479
Query 1971 CAAAGAACAGAACTCATGTGCAGAATGGTTAGCAAAGAGATCAGAAGAACAGCCTCAAGA 2030
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAAGAACAGAACTCGTGTGCAGAATGGTTAGCAAAGAGATCAGAAGAACAGCCTCAAGA 539
Query 2031 ATTAGTTTTCTTTGAATACCCTCCTCGAGGCCTTATGGATTTTCTGGAGAAAGACCGCCT 2090
|||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 540 ATTAGTTTTCTTCGAATACCCTCCTCGTGGCCTTGTGGATCTTCTGGAGAAAGACCGCCT 599
Query 2091 TGCAGCTATGTAG 2103
||||||||| |||
Sbjct 600 TGCAGCTATATAG 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79113438865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5