BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61100.1
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358315 jgi|Araly1|358315|fgenesh1_pg.C_scaffold_8002102 566 9e-161
> Ahg358315 jgi|Araly1|358315|fgenesh1_pg.C_scaffold_8002102
Length=702
Score = 566 bits (306), Expect = 9e-161
Identities = 488/565 (86%), Gaps = 56/565 (10%)
Strand=Plus/Plus
Query 1 ATGGTCTACGAAAGTGGGAACAAGCCTGGACCAGAAAATCCGACATTTAGTTCAGATTTA 60
|||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1 ATGGTCTACGAAAGTGGGTACAAGCCTGGATCAGAAAATCCGACATTTACTTCAGATTTA 60
Query 61 AGCCTTTCAGATTCTCTTGTAAAACTGAAGAAGAAGCCTTGTGAAGTATGCGGAAGTGAT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCCTTTCAAATTCTCTTGTAAAACTGAAGAAGAAGCCTTGTGAAGTATGCGGAAGTGAT 120
Query 121 GCCAATGAGCTTTTGATGATGACTTGCTTCATGTGCAGAGATACTAGGGAGCATACTTAT 180
|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 121 GCCAATGAGCATTTGATGATGACTTGCTTCATGTGCAGAGATGCTAGAGAGCATACTTAT 180
Query 181 TGCGCGAGGGTGATGTTTCAACGTGTGCCTCGTTTGTGGATTTGTGAAGAGTGCCGTGAT 240
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGCGCGAGGGTGATGTTACAACGTGTACCTCGTTTGTGGATTTGTGAAGAGTGCCGTGAT 240
Query 241 TTCTCATCTGTCGCCAACAAAACTGCTAATGCTCAA-T--------C-----A----TCA 282
||||||||| |||||||||||||||||||| ||||| | | | |||
Sbjct 241 TTCTCATCTATCGCCAACAAAACTGCTAATTCTCAAGTGGAAGAAGCTGCTCAACCATCA 300
Query 283 AGAACTATT---CAAGTGGAACAAGTTGTGGTTAAACAAGTTCGTATTGATCAAACTGTT 339
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 301 AGAACTATTATTCAAGTGGAACAAGTTGTGGTTAAAGAAGTTTGTATTGATCAAACTGTT 360
Query 340 CCATCACCAAGAACTAATCAAGTTGTGGATAACCACCAAGATCCTCCTATTGATCAAACT 399
|||||| ||| ||||| ||||||| || || | | |||||||||
Sbjct 361 CCATCATCAACAACTATTCAAGTT--------CC-------TC-T--T---GATCAAACT 399
Query 400 GA-TCCATCATCGACAACTATTCAAGTTGTGGATAATGAAAATTTGATTGAAGCTGCT-C 457
| ||||||||| | ||||||| || | | |||| ||||||||||||||||||||| |
Sbjct 400 -ACTCCATCATCAAGAACTATT---GT-G-G-ATAACGAAAATTTGATTGAAGCTGCTGC 452
Query 458 -C-ATCATCAAGAAGTAATCAAGTTGTTGATAACAAAGATTGGATTGAAGCTGCT-C-C- 512
| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 453 TCCATCATCAAGAAGTAATCAAGTTGCTGATAACAAAGATTGGATTGAAGCTGCTGCTCC 512
Query 513 ATCATTAAGATCTAATCAAGTTGTG 537
||||||||| |||||||||||||||
Sbjct 513 ATCATTAAGGTCTAATCAAGTTGTG 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25123002303
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5