BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61110.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358316 jgi|Araly1|358316|fgenesh1_pg.C_scaffold_8002103 425 1e-118
> Ahg358316 jgi|Araly1|358316|fgenesh1_pg.C_scaffold_8002103
Length=495
Score = 425 bits (230), Expect = 1e-118
Identities = 411/491 (84%), Gaps = 41/491 (8%)
Strand=Plus/Plus
Query 166 TGGATCA-GACGCTGGATCAGACGCTTCACTACCTTC-T-----TCAGAGATAAGCTTTG 218
||||| | |||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 15 TGGAT-ACGACGCTGGATCAGAAGCTTCACTACCTTCTTCAGGGTCAGAGATAAGCTTTG 73
Query 219 TCGAGGTAAAGAAGCCTTGTGAAGTTTGCGGAAGTAATGCCAATGATCATGC-GA--TAA 275
||||| ||| ||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 74 TCGAGATAACGAAGCCTTGTGAAGTTTGCGGAAGTAATGCCAATGATGATGATGAGATAA 133
Query 276 TGACATGCTT-TTTATGCAGAGATACACGAGAACATATTTATTGCGCGAGGGTGCATCTA 334
|||||||||| ||| |||||| ||||||||||||||| ||||||| |||||||| || |
Sbjct 134 TGACATGCTTCTTT-TGCAGAAATACACGAGAACATACTTATTGCTCGAGGGTG-ATGAA 191
Query 335 CG-ATCTGTTCCTCGAATGTGGATATGTGAAGAGTGCAGAA--TGAA--TCCAGTT--GT 387
| | ||||||||| |||||||||||| || ||||||| | || | | | ||
Sbjct 192 AGGAGCTGTTCCTCCAATGTGGATATGCGACGAGTGCATTTCCTCAAGATTTAATCAAGT 251
Query 388 TGTGAATAACGTAGCTCCTGTTGATCAAGAAGCTGCTGCATCATCATCAAGAATTACTTA 447
||||||||||| ||||||| |||||||| |||||||||||||| | ||| ||||||
Sbjct 252 TGTGAATAACGAAGCTCCTAATGATCAAG---CTGCTGCATCATCA--A-GAAGTACTTA 305
Query 448 TCAAGTTGCTGATAGTGAAGTTGTT-A--ATCAGA-CTATGACTTCAAGCGACTCTGGTA 503
|||||||| |||||||||||||||| | |||||| | |||||||| ||||||||||||
Sbjct 306 TCAAGTTGTTGATAGTGAAGTTGTTCATGATCAGAAC-ATGACTTCTGGCGACTCTGGTA 364
Query 504 ATCAAATCTCAGCGACTCATCAACAACCTCCACAGGCACATGCAAGTCCAGTAGCTG--- 560
|||||||||||||||||||| | |||| | |||| ||||||||||||||||||||||
Sbjct 365 ATCAAATCTCAGCGACTCATGATCAACTTTCACAAGCACATGCAAGTCCAGTAGCTGAAG 424
Query 561 ----TG--CCAATGGATACATCTTCAAGCGATAATCAGCAGCCACCCTCTGATTCGGAAT 614
|| |||||||||||||||||| |||| |||||| |||| ||||||||||||||||
Sbjct 425 AAGCTGTGCCAATGGATACATCTTCAGGCGAGAATCAGAAGCCGCCCTCTGATTCGGAAT 484
Query 615 CTGCAATCTAA 625
|||||||||||
Sbjct 485 CTGCAATCTAA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5