BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61120.1 Length=1656 Score E Sequences producing significant alignments: (Bits) Value Ahg496263 jgi|Araly1|496263|fgenesh2_kg.8__2079__AT5G61120.1 2165 0.0 > Ahg496263 jgi|Araly1|496263|fgenesh2_kg.8__2079__AT5G61120.1 Length=1705 Score = 2165 bits (1172), Expect = 0.0 Identities = 1339/1419 (94%), Gaps = 14/1419 (1%) Strand=Plus/Plus Query 1 CACTCTCTCTCTAACTGGTCCCTCAAGCTCCCACCACCTTCCCCACATTTCTTCCCCATT 60 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 CACTCTCTCTCTTACTGGTCCCTCAAGCT-CCACCACCTTCCCCACATTTCTTCCCCATT 59 Query 61 CTCTCTCTAAAACCATTTCTTTTTTCTCAGCTACAAAAATCGAAACTTTCCGACGAGTTT 120 ||||||||||| |||||| ||| ||||||||| ||||||| |||||||||||||||||| Sbjct 60 CTCTCTCTAAACCCATTT-TTTATTCTCAGCT--AAAAATCAAAACTTTCCGACGAGTTT 116 Query 121 TTAACATTAGGACTTCATTCGGCAAGAAGCATTACCGTAGTATG-T--CGGAT-TTGATT 176 | ||||||||| |||||| | ||||||||||||||||| | ||| | ||| || || Sbjct 117 TCAACATTAGGGCTTCATAC-GCAAGAAGCATTACCGTTGAATGTTAAAAGATGTT-CTT 174 Query 177 TAAGATGACATGAGATATGGCTGCATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 236 | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 175 T---TTGACATGAGATATGGCTGGATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 231 Query 237 CGGACATCAAGGATGGAAGAATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 296 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 232 TGGACATCAAGGATGGAAGGATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 291 Query 297 ACACTGTTATTGCATGCGGGAGAGTTCATTTGAGACCTCAATACATTTTGTCTGTGCTGA 356 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 292 ACACTGTTATTGCATGCGGGAGAATTCATTTGAGACCTCAACACATTTTGTCTGTGCTGA 351 Query 357 TTGTTCGATGAGACCTGTTCAAAACAAATTTACTTCAGATTCTATCAAAGGAGTCCCTAG 416 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | Sbjct 352 TTGTTCGATGAGACCTGTTCAAAACAGATTTACTTCAGATTCTATCAAAGCAGTCCCTCG 411 Query 417 AAGTATTAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGaaaaaaaT 476 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AAGTAATAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGAAAAAAAT 471 Query 477 TCCTGAAACGTCAAGGATGAAGTTAATTTCACCAGAGGAAGTaaaaaaaCTTGCATGTGG 536 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 472 TCCTGAAACGTCAAAGATGAAGTTAATTTCACCAGAGGAAGTAAAAAAACTTTCATGTGG 531 Query 537 AGGCAGTACCAGTAAACCAACTTTTAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 596 ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 532 AGGCAGTACAAGTAAATCAACTTTCAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 591 Query 597 GGGTTTAACAAAACCAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTACAGTGGT 656 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 592 GGGTTTAACAAAACAAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTGCAGTGGT 651 Query 657 GGCTCGCAAAACCAAATCAATTTACCTTCCACCTAAAAAGGTTGAGCCTCTTAGTCCTCG 716 ||||||||||||||| |||| | |||||||||||||| |||||||||||||||||||||| Sbjct 652 GGCTCGCAAAACCAATTCAAATCACCTTCCACCTAAACAGGTTGAGCCTCTTAGTCCTCG 711 Query 717 TACTCAACAGATTCGTCCAGGGGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 776 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 712 TACTCAGCAGATTCGTCCAGGAGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 771 Query 777 AGGGTCAAAATCAAAAGTTGGCGATGGAGCTAAATATCATGATTCCAACGAGATATGCCG 836 |||||||||| | |||||||| | ||||||||||||||||| | |||||||||||||||| Sbjct 772 AGGGTCAAAAACGAAAGTTGGTGGTGGAGCTAAATATCATGGTACCAACGAGATATGCCG 831 Query 837 ATCAATTTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 896 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 ATCAATCTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 891 Query 897 TTGGAAGGGACGCATAGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 956 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 CTGGAAGGGACGCATTGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 951 Query 957 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATATACTTTCAAAAGCTATTCCTGTCTT 1016 |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 952 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATGTACTTTCAAAGGCGGTTCCTGTCTT 1011 Query 1017 ACTCAAGGTCAAATTGGTTCCTATAGGCAATCTTCTGAGTGGTTTGTTTATGAACAGAAA 1076 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1012 ACTCAAGGTCAAATTGGTTCCTATAGGTAATCTTCTGAGTGATTTGTTTATGAACAGAAA 1071 Query 1077 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCAGATGACAAGAACACAAAAAGGTT 1136 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1072 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCATATGAAAAGAACACAAAAAGGTT 1131 Query 1137 TACAGCGGAACGTGATCATATCTTTGAGGCCATGAGGATTCGCAATGCCATGATGAAATT 1196 ||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| Sbjct 1132 TACGGAGGAACGTGATCATCTCTTTGAGGCCATGAGGACTCGCAATGCCATGATCAAATT 1191 Query 1197 TAACATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTACTGGACAAGTCCTCCCA 1256 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1192 TAATATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTATTGGACAAGTCCTCCCA 1251 Query 1257 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTGAC 1316 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1252 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTTAC 1311 Query 1317 GAAAAAGTCTTTAGCACTTCTTCCAGGAACATCGAATCAAACTCCCCAACATTTTGATGA 1376 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1312 AAAAAAGTCTTTAGCACTTCTTCCAGGAACTTCCAATCAAACTCCCCAACATTTTGATGA 1371 Query 1377 TGGATATGTAGTTGACAATGACACTGAA-CCTTTCTTCA 1414 |||| ||||||||||||||||||||||| || ||| ||| Sbjct 1372 TGGAGATGTAGTTGACAATGACACTGAAACCCTTCATCA 1410 Score = 300 bits (162), Expect = 3e-80 Identities = 215/239 (90%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 1421 ACCACCGGAATTGTGG-GAAGCAATTGCAGAGACATTA-TGGTCAGAGGGATTGATCAAA 1478 |||||||||||| ||| ||| ||||| |||||||||| || ||||||| ||||| || Sbjct 1473 ACCACCGGAATTCTGGTAAAG-AATTGTAGAGACATTACAGG-GAGAGGGACTGATC-AA 1529 Query 1479 TGGGGAGTGGCTTATGTTGTCTCAAGGAAATTGCTATATAGATTAGTGCTACTAATCTCT 1538 || ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1530 TGTGGAGTGGCTGATGTTGTCTCTAGGAAATTGGTATATAGATTAGTGCTACTAATCTCT 1589 Query 1539 GATTGTACTGTTCTATATTGGTGTAAGAAGTAAAAAATTTAACCCTTGTGTTACTTTTT- 1597 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1590 GATTGT---GTTCTATATTGGTGTAAGAAGTAAAAAATTTAGCCCTTGTGTTACTTTTTT 1646 Query 1598 ACCTCCTGATTGCTTGTAGATTTTTATGGGGTATTAAATAAAGGTTAGATTGTTTATAT 1656 ||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 1647 ACCTCCTGATTACTTGTAGATTTTTATGGGGTACTGAATAAAGGTTATATTGTTTATAT 1705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62087099350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5