BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61120.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496263 jgi|Araly1|496263|fgenesh2_kg.8__2079__AT5G61120.1 2165 0.0
> Ahg496263 jgi|Araly1|496263|fgenesh2_kg.8__2079__AT5G61120.1
Length=1705
Score = 2165 bits (1172), Expect = 0.0
Identities = 1339/1419 (94%), Gaps = 14/1419 (1%)
Strand=Plus/Plus
Query 1 CACTCTCTCTCTAACTGGTCCCTCAAGCTCCCACCACCTTCCCCACATTTCTTCCCCATT 60
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CACTCTCTCTCTTACTGGTCCCTCAAGCT-CCACCACCTTCCCCACATTTCTTCCCCATT 59
Query 61 CTCTCTCTAAAACCATTTCTTTTTTCTCAGCTACAAAAATCGAAACTTTCCGACGAGTTT 120
||||||||||| |||||| ||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 60 CTCTCTCTAAACCCATTT-TTTATTCTCAGCT--AAAAATCAAAACTTTCCGACGAGTTT 116
Query 121 TTAACATTAGGACTTCATTCGGCAAGAAGCATTACCGTAGTATG-T--CGGAT-TTGATT 176
| ||||||||| |||||| | ||||||||||||||||| | ||| | ||| || ||
Sbjct 117 TCAACATTAGGGCTTCATAC-GCAAGAAGCATTACCGTTGAATGTTAAAAGATGTT-CTT 174
Query 177 TAAGATGACATGAGATATGGCTGCATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 236
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 175 T---TTGACATGAGATATGGCTGGATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 231
Query 237 CGGACATCAAGGATGGAAGAATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 296
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TGGACATCAAGGATGGAAGGATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 291
Query 297 ACACTGTTATTGCATGCGGGAGAGTTCATTTGAGACCTCAATACATTTTGTCTGTGCTGA 356
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 292 ACACTGTTATTGCATGCGGGAGAATTCATTTGAGACCTCAACACATTTTGTCTGTGCTGA 351
Query 357 TTGTTCGATGAGACCTGTTCAAAACAAATTTACTTCAGATTCTATCAAAGGAGTCCCTAG 416
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 352 TTGTTCGATGAGACCTGTTCAAAACAGATTTACTTCAGATTCTATCAAAGCAGTCCCTCG 411
Query 417 AAGTATTAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGaaaaaaaT 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AAGTAATAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGAAAAAAAT 471
Query 477 TCCTGAAACGTCAAGGATGAAGTTAATTTCACCAGAGGAAGTaaaaaaaCTTGCATGTGG 536
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 472 TCCTGAAACGTCAAAGATGAAGTTAATTTCACCAGAGGAAGTAAAAAAACTTTCATGTGG 531
Query 537 AGGCAGTACCAGTAAACCAACTTTTAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 596
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 532 AGGCAGTACAAGTAAATCAACTTTCAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 591
Query 597 GGGTTTAACAAAACCAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTACAGTGGT 656
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 GGGTTTAACAAAACAAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTGCAGTGGT 651
Query 657 GGCTCGCAAAACCAAATCAATTTACCTTCCACCTAAAAAGGTTGAGCCTCTTAGTCCTCG 716
||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 652 GGCTCGCAAAACCAATTCAAATCACCTTCCACCTAAACAGGTTGAGCCTCTTAGTCCTCG 711
Query 717 TACTCAACAGATTCGTCCAGGGGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 776
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 712 TACTCAGCAGATTCGTCCAGGAGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 771
Query 777 AGGGTCAAAATCAAAAGTTGGCGATGGAGCTAAATATCATGATTCCAACGAGATATGCCG 836
|||||||||| | |||||||| | ||||||||||||||||| | ||||||||||||||||
Sbjct 772 AGGGTCAAAAACGAAAGTTGGTGGTGGAGCTAAATATCATGGTACCAACGAGATATGCCG 831
Query 837 ATCAATTTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 896
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATCAATCTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 891
Query 897 TTGGAAGGGACGCATAGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 956
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTGGAAGGGACGCATTGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 951
Query 957 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATATACTTTCAAAAGCTATTCCTGTCTT 1016
|||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 952 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATGTACTTTCAAAGGCGGTTCCTGTCTT 1011
Query 1017 ACTCAAGGTCAAATTGGTTCCTATAGGCAATCTTCTGAGTGGTTTGTTTATGAACAGAAA 1076
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1012 ACTCAAGGTCAAATTGGTTCCTATAGGTAATCTTCTGAGTGATTTGTTTATGAACAGAAA 1071
Query 1077 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCAGATGACAAGAACACAAAAAGGTT 1136
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1072 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCATATGAAAAGAACACAAAAAGGTT 1131
Query 1137 TACAGCGGAACGTGATCATATCTTTGAGGCCATGAGGATTCGCAATGCCATGATGAAATT 1196
||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct 1132 TACGGAGGAACGTGATCATCTCTTTGAGGCCATGAGGACTCGCAATGCCATGATCAAATT 1191
Query 1197 TAACATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTACTGGACAAGTCCTCCCA 1256
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1192 TAATATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTATTGGACAAGTCCTCCCA 1251
Query 1257 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTGAC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTTAC 1311
Query 1317 GAAAAAGTCTTTAGCACTTCTTCCAGGAACATCGAATCAAACTCCCCAACATTTTGATGA 1376
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1312 AAAAAAGTCTTTAGCACTTCTTCCAGGAACTTCCAATCAAACTCCCCAACATTTTGATGA 1371
Query 1377 TGGATATGTAGTTGACAATGACACTGAA-CCTTTCTTCA 1414
|||| ||||||||||||||||||||||| || ||| |||
Sbjct 1372 TGGAGATGTAGTTGACAATGACACTGAAACCCTTCATCA 1410
Score = 300 bits (162), Expect = 3e-80
Identities = 215/239 (90%), Gaps = 9/239 (4%)
Strand=Plus/Plus
Query 1421 ACCACCGGAATTGTGG-GAAGCAATTGCAGAGACATTA-TGGTCAGAGGGATTGATCAAA 1478
|||||||||||| ||| ||| ||||| |||||||||| || ||||||| ||||| ||
Sbjct 1473 ACCACCGGAATTCTGGTAAAG-AATTGTAGAGACATTACAGG-GAGAGGGACTGATC-AA 1529
Query 1479 TGGGGAGTGGCTTATGTTGTCTCAAGGAAATTGCTATATAGATTAGTGCTACTAATCTCT 1538
|| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1530 TGTGGAGTGGCTGATGTTGTCTCTAGGAAATTGGTATATAGATTAGTGCTACTAATCTCT 1589
Query 1539 GATTGTACTGTTCTATATTGGTGTAAGAAGTAAAAAATTTAACCCTTGTGTTACTTTTT- 1597
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1590 GATTGT---GTTCTATATTGGTGTAAGAAGTAAAAAATTTAGCCCTTGTGTTACTTTTTT 1646
Query 1598 ACCTCCTGATTGCTTGTAGATTTTTATGGGGTATTAAATAAAGGTTAGATTGTTTATAT 1656
||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1647 ACCTCCTGATTACTTGTAGATTTTTATGGGGTACTGAATAAAGGTTATATTGTTTATAT 1705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5