BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61130.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950866 jgi|Araly1|950866|scaffold_802753.1 1042 0.0
Ahg350051 jgi|Araly1|350051|fgenesh1_pg.C_scaffold_6000644 303 1e-81
> Ahg950866 jgi|Araly1|950866|scaffold_802753.1
Length=646
Score = 1042 bits (564), Expect = 0.0
Identities = 621/648 (96%), Gaps = 5/648 (1%)
Strand=Plus/Plus
Query 193 ATTTTGTCTGAAC-GCATCTATGGCTGCTCTGGTGCTTTCACTTCTCCTTCTATCCTTGG 251
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATTTTGTCTGAACGGCATCTATGGCTGCTCTGGTGCTTTCACTTCTCCTTCTAGCCATGG 60
Query 252 CTGGACATTCTAGTGCCTCATGGTGTGTGTGTAAGACAGGGCTGAGTGATACAGTGCTAC 311
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 61 CTGGACATTCTAGTGCGTCATGGTGTGTGTGTAAAACAGGACTGAGTGATACAGTTCTTC 120
Query 312 AGGCAACCCTAGACTATGCTTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAAC 371
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGGAACCCTAGACTATGCGTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAAC 180
Query 372 AATCTTGCTTCAACCCTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTTCT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AATCTTGCTTCAACCCTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTACT 240
Query 432 TCCAAAAGAAGGGTCAATCTCCTGGCTCTTGTAATTTCGATGGAACTGCCACTCCCACTA 491
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TCCAAAAGAAGGGTCAATCTCCTGGCTCTTGTAATTTCGATGGCACTGCCACTCCCACTA 300
Query 492 ACTCCGATCCCAGTTATACAGGTTGTGCCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCA 551
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 301 ACTCCGATCCCAGTTATACAGGGTGTACCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCA 360
Query 552 GCACAACTGTGACACCTGGCACAACCAATCCAAAAGGCAGCCCAA-CGACCACCACACTT 610
|||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 361 GCACGACTGTGACACCTGGCACAACCAATCCAAAAGGCAGCTCAAGC-ACCACCACACTT 419
Query 611 CCTGGTAGTGGTACCAACAGTCCTTATTCAGGGAACCCAACCAATGGAGTTTTTGGGGGA 670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCTGGTAGTGGTACCAACAGTCCTTATTCAGGGAACCCAACCAATGGAGTTTTTGGGGGC 479
Query 671 AATAGCACAGGAGGCACCACTGGGACAGGGATTAACCCGGATTACACGACAGACAGCAGC 730
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 480 AATAGCACAGGAGGCACCACTGGGACAGGGATTAATCCGGATTACACAACAGAAAGCAGC 539
Query 731 GCGTTTGCTCTCAAGAACTCAAGCAAATTGTTCATCTGCCTTCTCTT-GATCGCTTCGAG 789
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 540 GCGTTTGCTCTCAAGAACTCAAGCAAATTGTTCGTCTGCCTTCTCTTTG-TCGCTTCGAG 598
Query 790 TGGATTCTGCTCTTTCCTGATGCTCTAAGGATGTTAATGGTCTCTGGT 837
||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 599 TGGATTCTGTTCTTTCTTGATGCTCTAAGGATGTTAATGGTCTCTGGT 646
> Ahg350051 jgi|Araly1|350051|fgenesh1_pg.C_scaffold_6000644
Length=585
Score = 303 bits (164), Expect = 1e-81
Identities = 335/415 (81%), Gaps = 22/415 (5%)
Strand=Plus/Plus
Query 212 ATGGCTGCTCTGGTGCT-TTCACTTCTCCTTCTATCCT--TGGCTGGACATTCTAGTGCC 268
|||||||||||||| || | | |||||| || |||| ||||||| ||||| ||||||
Sbjct 1 ATGGCTGCTCTGGTTCTCTAC-CTTCTCAGTC--TCCTCATGGCTGGCCATTCCAGTGCC 57
Query 269 TCATGGTGTGTGTGTAAGACAGGGCTGAGTGA-TACAGTGCTACAGGCA-ACCCTAGACT 326
|||||||||||||| || |||||||||||||| | |||||||||| | || ||||||
Sbjct 58 TCATGGTGTGTGTGCAAAACAGGGCTGAGTGACT-CAGTGCTACA-AAAGACATTAGACT 115
Query 327 ATGCTTGTGGAAATGGAGCAGATTGTAATCCTACTAAACCAAAACAATCTTGCTTCAACC 386
||||||||||||||||||| || ||||| || ||| | |||||| |||||||| ||||
Sbjct 116 ATGCTTGTGGAAATGGAGCTGACTGTAACCCAACTCACCCAAAAGGCTCTTGCTTTAACC 175
Query 387 CTGACAATGTTAGGTCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAGGGTC 446
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 176 CTGACAATGTTAGGGCTCATTGCAACTATGCAGTCAATAGCTTCTTCCAAAAGAAAGGTC 235
Query 447 AATCTCCTG-GCTCTTGTAATTTCGA-TGGAACTGCCACTCCCACTAACTCCGATCCCAG 504
|| || ||| | |||||||| ||| | ||| |||| |||| || | | | ||||||||
Sbjct 236 AAGCTGCTGAG-TCTTGTAACTTC-ACTGGTTCTGCAACTCTTACCACCACTGATCCCAG 293
Query 505 TTATACAGGTTGTGCCTTTCCTACTAGTGCCAGTGGCTCTAGCGGCAGCA----CA--AC 558
|||||||| ||||| || ||| ||| ||| ||||| | ||| || |||| || ||
Sbjct 294 CTATACAGGATGTGCATTCCCTTCTACTGCTAGTGGTTGTAGTGGAAGCAGTAGCACCAC 353
Query 559 TGTGACACCTGGCACAACCAATCCAAAAGGCAGCC-CAACGACCACCACACTTCC 612
||||| || |||| || || ||||||||| ||| || | | ||||||| ||||
Sbjct 354 CGTGACGCCAGGCAAAAACAGTCCAAAAGGAAGCAACAGC-ATCACCACATTTCC 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5