BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61150.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358320 jgi|Araly1|358320|fgenesh1_pg.C_scaffold_8002107 2041 0.0
> Ahg358320 jgi|Araly1|358320|fgenesh1_pg.C_scaffold_8002107
Length=2163
Score = 2041 bits (1105), Expect = 0.0
Identities = 1255/1324 (95%), Gaps = 23/1324 (2%)
Strand=Plus/Plus
Query 774 CATAGATCGCCAATCGAAGATGAAGAGGGCTCTGAGAAGGATCTGAGACCCGATGATATG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATAGATCGCCAATCGAAGATGAAGAGGGCTCTGAGAAGGATCTGAGACCCGATGATATG 900
Query 834 GTGCTTGATGATATAATCCCTGAAGAAGATCCTCAATACGAGTCAGAAGCTGAACATGTT 893
| |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 901 GGGCTTGATGATATGCTCCCTGAAGAGGATCCTCAATACGAGTCAGAAGCTGAGCATGTT 960
Query 894 GAAGCTAGGTACAGGGAGAGGCCAGTTGGTCCCCCTTTGGAAGTGGAGGTTCCTTTCCGC 953
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 GAAGCTAGGTACAGGGAGAAGCCAGTTGGCCCCCCTTTGGAAGTGGAGGTTCCTTTCCGC 1020
Query 954 CCTCCTCCAGGTGACCCCGTTAAGATGAACATGATAAAAGTTTCCAATATCATGGGGATT 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 CCTCCTCCAGGTGACCCCGTTAAGATGAACATGATAAAAGTTTCCAATATCATGGGAATT 1080
Query 1014 GATCCAAAGCCTTTTGATGCCAAAACATTCGTTGAAGAAGACACATTCATGACAGATGAA 1073
||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1081 GATCCAAAGCCATTCGATGCCAAAACATTCGTTGAAGAAGACACATTCGTGACAGAAGAA 1140
Query 1074 CCCGGAGCAAAGAATCGTATCCGTTTGGACAATAATATTGTTCGCCATAGGTTTGTTAAG 1133
|| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1141 CCTGGAGCAAAGAAGCGTATTCGTTTGGAAAATAATATTGTTCGCCATAGGTTTGTTAAG 1200
Query 1134 AGTCGAGATGGCAAAACATATAGTGAAAGTAATGCTCGGTTTGTAAGGTGGTCAGATGGA 1193
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGTCGAGATGGCAAAACATATACTGAAAGTAATGCTCGGTTTGTAAGGTGGTCAGATGGG 1260
Query 1194 AGCTTACAGCTATTGATAGGAAACGAAGTTCTTAACATAACTGAACAAGATGCAAAAGAA 1253
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1261 AGCTTACAGCTATTGATAGGAAACGAAGTTCTTGACATAACTGAACAAGATGCAAAACAA 1320
Query 1254 GACCAGAATCACCTCTTTATCAAACATGAAAAGGGTATCCTTCAATCACAAGGAAGAATT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GACCAGAATCACCTCTTTATCAAACATGAAAAGGGTATCCTTCAATCACAAGGAAGAATT 1380
Query 1314 TTGAAGAAAATGAGATTTACCCCATCATCGCTGACGTCAAATTCCCATAGGCTCTTGACT 1373
||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||
Sbjct 1381 TTGAAGAAAATGAGATTTATCCCATCATCTCTAACGTCAAATTCCCATAGGCTTTTGACT 1440
Query 1374 GCCATTGTTGAATCGAGGCAGAAGAAGGCCTTCAAAGTTAAGAACTGTGTCACTGACATT 1433
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCCCTTGTTGACTCGAGGCAGAAGAAGGCCTTCAAAGTTAAGAACTGTGTCACTGACATT 1500
Query 1434 GACCCTGAGAGGGAGAAGGAGAAGAGAGAAAAGGCGGAAAGCCAAAACCTCAAGGCTAGT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GACCCTGAGAGGGAGAAGGAGAAGAGAGAAAAGGCGGAAAGCCAAAACCTCAAGGCTAGT 1560
Query 1494 ACAAAGCTGAGTCAGGCGAGGGAGAAAATCAAGCGCAAGTATCCACTTCCTGTTGAAAGG 1553
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1561 ACAAAGCTGAGTCAGGCGAGGGACAAAATCAAGCGCAAGTATTCACTTCCTGTTGAAAGG 1620
Query 1554 AGACAACTTTCCACTGGCTACTTGGAAGATGCTCTTGATGAGGATGACGAG---GA---- 1606
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1621 AGACAACTTTCCACCGGCTACTTGGAAGATGCTCTTGATGAGGATGACGAGACAGACCAC 1680
Query 1607 T-T-------ACCGCTCAAACCGTGGCTATGAGGAAGATCTCGAAGCTGAAGCGCAACGG 1658
| | |||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1681 TATGGTTCTCACCGTTCAAACCGTGGCTACGAGGAGGATCTCGAAGCTGAAGCGCAACGG 1740
Query 1659 GAACGCCGGATTCTAAACGCCAAGAAGAGCCACAAAGGCATTCCGGGGAGGTCTTCAATG 1718
|| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1741 GAGCGCCGGATTCTGAACGCCAAGAAGAGCCGCAAAGGCATTCCGGGGAGGTCTTCAATG 1800
Query 1719 ACTTCGGCCAGACCGTCAAGACGTCAAATGGAGTATTCTgagagtgagagagaggaatca 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 ACTTCGGCCAGACCGTCAAGACGTCAAATGGAGTATTCTGAGAGTGAGAGAGAGGAATCA 1860
Query 1779 gaatatgagacggaagaagaagaggaagaaAAGTCACCG--GCCC-GTGGAAGGGGCAAG 1835
||||||||||||||||||||||||||||||||||||||| |||| |||| || || |||
Sbjct 1861 GAATATGAGACGGAAGAAGAAGAGGAAGAAAAGTCACCGCCGCCCCGTGGTAGAGGAAAG 1920
Query 1836 GATTCAGAAGATGAATATGAGGAAGATGCAGAAGAAGATGAAGAGGAACGAGGA--AAA- 1892
|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 1921 GAATCAGAAGATGAATATGAGGAAGATGCAGAAGAAGATGAAGATGAAGGAGGAGGAAAA 1980
Query 1893 TCTAACAGATACTCAGATGAAGATGAAGAAGAGGAAGAGGTTGCGGGAGGTA-GGGCAGA 1951
||||||||||| ||||||||||| |||||||||||||||| |||||||| || |||||||
Sbjct 1981 TCTAACAGATATTCAGATGAAGACGAAGAAGAGGAAGAGGCTGCGGGAG-TAAGGGCAGA 2039
Query 1952 GAAGGATCACCGTGGAAGTGGCCGGAAAAGGAAAGGGATTGAGTCTGACGAGGAGGAGTC 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 GAAGGATCACCGTGGAAGTGGCCGGAAAAGGAAAGGGATTGAGTCTGACGAGGAGGAGTC 2099
Query 2012 TCCGCCTAGAAAAGCTCCGACTCATCGTCGTAAGGCCGTGATTGATGACAGTGACGAAGA 2071
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 TCCGCAGAGAAAAGCTCCGACTCATCGTCGTAAGGCCGTGATTGATGACAGTGACGAAGA 2159
Query 2072 TTAA 2075
||||
Sbjct 2160 TTAA 2163
Score = 494 bits (267), Expect = 1e-138
Identities = 318/341 (93%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 315 GATGAGGCTGAGGGCGGGGTGGAGCCTGAAGGAGAAGGTGAAGCTGAGGTTGAAGTTCAC 374
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GATGAGGCCGAGGGCGGAGTGGAGCCTGAAGGAGAAGGTGAAGCTGAGGTTGAAGTTCAC 306
Query 375 GGAGAAGCTGAAGCTGAGTCTGACGGGGAACAGGGAGATGTAGAACTTGATCCTGGAGAA 434
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GGAGAGGCTGAAGTTGAGTCTGACGGGGAACAGGGAGATGTAGAACTTGATCCTGGAGAA 366
Query 435 AGTGAGGGTGAGAGGGAGCAAAGTTCAC---A-G--GA-G--GCTGATCCACAAGAGGAA 485
|||||||||||||| ||||||||||||| | | || | ||||||||||||||||||
Sbjct 367 AGTGAGGGTGAGAGAGAGCAAAGTTCACAGGAGGTTGATGTTGCTGATCCACAAGAGGAA 426
Query 486 AGTGAAGCAAGAGATAGTGATAGTGATAACAAAGAAGAAGAACATGGGGGTAGAGTAGCC 545
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 427 AGTGAAGCAAGAGATAGTGATAGTGATAATAAAAAAGAAGAACATGGGGGTAGAGTAGCC 486
Query 546 AAAAAGAGGAGACAGGAGGTTGTTGAGAGCGGATCAGAGAGGTCTGGTGAAAAGCATTAT 605
||||| || || ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 487 AAAAACAGAAGGCAGGATGTTGTTGAGAGTGGATCAGAGAGGTCTGGTGAAAAGCAGTAC 546
Query 606 GAGTCTGAAGATGAAGAGGTTGATCAGACTAGGAGTCCAAG 646
|||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GAGTCTGAAGATGAAGAGGTTGATCAGACTAGGAGTCCAAG 587
Score = 193 bits (104), Expect = 6e-48
Identities = 115/120 (96%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 648 TCACCTAGTGAGGAGAAGGAAGAGGTTCAAGTTGCACAGTCAGACGTAAATATTCGTAAT 707
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 661 TCACCTAGTGAGGAGAAGGAAGAGGCTCAAGTTGCACAGTCAGACGCAAATATTCGTAAT 720
Query 708 GT-TTTCGGATCTTCGGATGATGAAGACGCAGAAGAATATGTTCGGAATGACGTTGAGCA 766
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GTATTT-GGATCTTCGGATGATGAAGATGCAGAAGAATATGTTCGGAATGACGTTGAGCA 779
Score = 154 bits (83), Expect = 3e-36
Identities = 107/118 (91%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 196 AGATGGTTAAAGGAGAAAAGAGATCCGAGATGATGCTTAATCTGTTCGGAGATAATTCCG 255
|||||||| || ||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 26 AGATGGTTGGAGTAGAAAAGAGATCCGATATTATGCATAATCTGTTCGGAGATAATTCCG 85
Query 256 AGGAAGAAGAGATCGAATCCGAACATGAATGCAATCGTCGTCAGCCTAACTACGCTTC 313
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 86 AGGAAGAAGAGATCGAATCCGAACATGAATCCAATCGTC---AGCCAAACTACGCTTC 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5