BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61160.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917865 jgi|Araly1|917865|Al_scaffold_0008_2616 941 0.0
> Ahg917865 jgi|Araly1|917865|Al_scaffold_0008_2616
Length=1080
Score = 941 bits (509), Expect = 0.0
Identities = 603/648 (93%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 451 GAGCTACCGATTTATTCTGACTCGGGGGCTGTTGTATCTCTGCAAGTCACTTTGTTCCCG 510
||||||||||||||| | || | ||||||||||||||| |||||||||||||||||||||
Sbjct 166 GAGCTACCGATTTATGCCGAATTGGGGGCTGTTGTATCCCTGCAAGTCACTTTGTTCCCG 225
Query 511 AAACAAGGCTTCTGCATTGGAACCACAGCCCACCATGTCGTCTTGGACGGCAAAACGGCT 570
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 226 AAACAAGGCTTCTGCATTGGAACCACAATCCACCATGTCGTCGTGGACGGCAAAACTGCT 285
Query 571 GAAAAATTTAACAAAGCATGGGCTCACACTTGTAAACATGGCACCATACCGAAAATTCTA 630
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 286 GAAAAATTTAACAAAGCATGGGCTCATGCTTGTAAACATGGGACCATACCGAAAATTTTA 345
Query 631 CCAACGGTTTTAGATCGTTCTGTCGTCAATGTTCCAGCCGGACTTGAACAAAAGATGCTC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CCAACGGTTTTAGATCGTTCTGTCGTCAATGTTCCAGCCGGACTTGAACAAAAGATGCTC 405
Query 691 GAACTTCTGCCGTATCTTACGGAGGACGACAAAGAGAACGGAAGAACCCTAAAGCTACCT 750
| ||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 406 GGACTTCTGCCGTATCTCACGGA-G--GACAAAGAGAACGCAAGAACCCTAAAGCTACCT 462
Query 751 CCAGTCAAAGAGATTAACGCTAAAGACAACGTCCTCCGAATCACCATCGAGATAAGTCCT 810
||||| ||||||||| |||| |||||||||||||||||| |||||||||||| | ||||
Sbjct 463 CCAGTAAAAGAGATTTTCGCTGAAGACAACGTCCTCCGAACCACCATCGAGATGACTCCT 522
Query 811 GAAAACATTGAGAAACTCAAGGAGAGAGCCAAGAAAGAGTCAACACGCGCTGAGCTTCAC 870
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 523 GAAAATATTGAGAAACTCAAAGAGCGAGCCAAGAAAGAGTCAACACGCGCTGAGCTTCAC 582
Query 871 TTGTCAACGTTCGTAGTCACGTTCGCCCATGTGTGGACATGCATGGTGAAGGCACGTAGT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 583 TTGTCAACGTTCGTAGTCACGTTCGCCCATGTGTGGACATGCATGGTGAAGGCCCGTAGA 642
Query 931 GGTGACCCAAACCGACCGGTTCGTTTCATGTACGCTGCTGATTTTAG-GAACCGGTTAGA 989
|| ||||| | |||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 643 GGCGACCCGGAGCGACCGGTTCGTTTCATGTATGCTGCTGATTTTAGAGA-CCGGTTAGA 701
Query 990 ACCACCAGTCCCTGTGACATACTTCGGGACTTGTGTCTTAGCCATGGATTTCTATAAATA 1049
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 702 CCCACCAGTCCCTGTGACATACTTCGGGACGTGTGTCTTAGCCATTGATTTCTATAAATA 761
Query 1050 CAAAGCTAAGGA-GTTTATGGGAGAAGATGGATTTGTCAACACC-GTC 1095
|||||||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 762 CAAAGCTAAG-ACGTTTTTGGGAGAAGATGGATTTGTCAACACCAGTC 808
Score = 436 bits (236), Expect = 2e-121
Identities = 264/277 (95%), Gaps = 3/277 (1%)
Strand=Plus/Plus
Query 1142 AGTCAACTTGGAAAGTGTATGA-GGAAGGAACAAAGACAATGAAATGGGGTACACAGTTG 1200
||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 805 AGTCAACTTGGAAGGTGTATGAGGGAAGGAACAAAGACGATGAAATGGGGTACACAGTTG 864
Query 1201 TTGGTCGTAAACGGGTCGAACCAGATTGGGATGTACGAAACGGACTTCGGGTGGGGAAGA 1260
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 865 TTGGTCGTAAACGGGTCCAACCAGATAGGGATGTACGAAACGGATTTCGGGTGGGGAAGA 924
Query 1261 CCCATTCACACTGAGACAATGTCTATCTACAAGAACGATGAGTTCTCTATGTCCAAGAGG 1320
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CCCGTTCACACTGAGACATTGTCTATCTACAAGAACGATGAGTTCTCTATGTCCAAGAGG 984
Query 1321 AGAGATGGTATCGGTGGCGTCGAGATTGGCATCTCTTTGAAGAAACTTGAGATGGATACT 1380
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 985 AGAGATGGGATCGGTGGCGTCGAGATTGGCGTCTCTTTGAAGAAACTTGAGATGGATG-T 1043
Query 1381 TTTCT-GTCTTTATTTTACAAATGGATTGGAAACTGA 1416
||||| |||||||||||||||||||||||||||||||
Sbjct 1044 TTTCTTGTCTTTATTTTACAAATGGATTGGAAACTGA 1080
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 382 GATGCGGATTTCTCACGTATCTCTGGCAGAGGGCTTCGTCCAGAGCTAGAGTTAC 436
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 GATGCGGATTTCTCACGTATCTCTGGCAGAGGGCTTCGTCCAGAGCTAGAGCTAC 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5