BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61170.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496269 jgi|Araly1|496269|fgenesh2_kg.8__2085__AT5G61170.1 957 0.0
> Ahg496269 jgi|Araly1|496269|fgenesh2_kg.8__2085__AT5G61170.1
Length=639
Score = 957 bits (518), Expect = 0.0
Identities = 591/624 (95%), Gaps = 14/624 (2%)
Strand=Plus/Plus
Query 6 CCCGTCTTCAAGTATCGCCGACGCCGCAGCA-CAAAGGAGGAGAAGAAGGATCAAAGGCG 64
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CCCGTCTCCAAGTATCGCCGACGCCGCAGCACCAAAGGAGGAGAAGAAGGATCAAAGGCG 60
Query 65 CG--ACAACAATGGCGACAGGTAAAACAGTGAAGGATGTCTCTCCACACGAGTTCGTCAA 122
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGACACAACAATGGCGACTGGTAAAACAGTGAAGGATGTCTCTCCACACGAGTTCGTCAA 120
Query 123 GGCTTACGCTGCCCATCTCAAGCGTTCCGGCAAGATTGAGCTGCCTCTGTGGACAGACAT 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GGCTTACGCTGCCCATCTCAAGCGCTCCGGCAAGATTGAGCTGCCTCTGTGGACAGACAT 180
Query 183 CGTCAAGACTGGTAAACTTAAGGAGCTTGCTCCATATGACCCTGACTGGTACTACATCAG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCAAGACTGGTAAACTTAAGGAGCTTGCTCCATATGACCCTGACTGGTACTACATCAG 240
Query 243 AGCTGCTTCCATGGCTAGGAAGGTTTACCTGAGGGGTGGTCTTGGAGTTGGTGCCTTCCG 302
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 241 AGCTGCTTCCATGGCTAGGAAAGTCTACCTGAGGGGTGGTCTTGGAGTTGGTGCTTTCCG 300
Query 303 TAGGATCTATGGAGGAAGCAAGAGGAACGGAAGCCGTCCTCCTCATTTCTGCAAGAGCAG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGGATCTATGGAGGAAGCAAGAGGAACGGAAGCCGTCCTCCTCATTTCTGCAAGAGCAG 360
Query 363 TGGTGGTGTTGCTCGTCACATTCTTCAGCAACTCCAGACCATGAACATTGTTGACCTCGA 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGGTGGTGTTGCTCGTCACATTCTTCAGCAACTCCAGACCATGAACATTGTTGACCTCGA 420
Query 423 CACCAAGGGTGGAAGGAAGATCACATCAAGTGGTCAGAGAGATCTCGACCAAGTCGCTGG 482
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 421 CACCAAGGGGGGAAGGAAGATCACGTCAAGTGGTCAGAGAGATCTTGACCAAGTCGCTGG 480
Query 483 AAGGATCGCAGCTGCTGTCTAAATCATAGCG-A-C-T--GATGGTCAACTCCAAGTTTAA 537
||||||||||||||| |||||||||| | | | | | ||||||||| || ||||||||
Sbjct 481 AAGGATCGCAGCTGCCGTCTAAATCAAATCATAACGTCAGATGGTCAAGTCTAAGTTTAA 540
Query 538 GGTTTATGTTTGAGATTTAG-TAATGGAATGAGTTGCATTTGATGAAAACCAGTAGTAGA 596
|||||||||| ||||||||| || ||||||||||||||||||| ||| ||| |||||||
Sbjct 541 GGTTTATGTTGGAGATTTAGATA-TGGAATGAGTTGCATTTGA--AAA-CCAATAGTAGA 596
Query 597 ATTCCCTCTCATTTTTGT-TTTGA 619
|||||||||||||||| | |||||
Sbjct 597 ATTCCCTCTCATTTTTATCTTTGA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5