BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61180.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496270 jgi|Araly1|496270|fgenesh2_kg.8__2086__AT5G61180.1 508 2e-143
> Ahg496270 jgi|Araly1|496270|fgenesh2_kg.8__2086__AT5G61180.1
Length=795
Score = 508 bits (275), Expect = 2e-143
Identities = 455/536 (85%), Gaps = 35/536 (7%)
Strand=Plus/Plus
Query 25 GCAACTGCTAAATCATTGGCGTTGCTGGACACAGAGAACCGCGAGGTTCTCAATAGTTTT 84
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 12 GCAACTGCTAAATCATTGGCGTTGCTGGATACAGAGAACCGCGAGGTTCTCAAAAGTTGG 71
Query 85 GATGCCATTTTTACTCATGGCAACACCGATCAAGTCGCTCCTCTTGATGAGCCTCTGGTC 144
|||||||| ||||||||||||||||| |||| ||||||||||| | |||||| |||| |
Sbjct 72 GATGCCATCTTTACTCATGGCAACACTGATCCAGTCGCTCCTC-T--TGAGCCACTGGCC 128
Query 145 TTTAACCGCTTTGGACTCAGTCACATCTCGGCCAAAGA-CACCCATCAACCAAAAACGGA 203
|| ||| |||||||||| ||||| ||||||||||||| || ||||||||||||||| ||
Sbjct 129 TTCAACGGCTTTGGACT--GTCACGTCTCGGCCAAAGACCA-CCATCAACCAAAAACAGA 185
Query 204 CGTAGATGAATCAGCGAAGGCGGATTTCGCTGGTGCAAAAACGTCAGTTTGGTGGGACAT 263
| ||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 186 AGAAGACGAATCAGCAAAGGGGGATTTCGCTGGTGCAAAAACGTCTGTTTGGTGGGACAT 245
Query 264 TGAGAACTGCGAGGTTCCAAAGGGTTGTGACCCTCATGGGGTTGCTCAGAGCATTAGATC 323
||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 246 TGAGAACTGCGAGGTTCCAAAGGGTTGTGACCCCCATGGTGTTGTTCAGAGCATTAGATC 305
Query 324 AGTTCTGTCGAAAAGTAACTTCTGTGGTCCGCTCACTATTTATGCCTATGGTGACACAAA 383
|| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 306 GGTGCTGTTGAAAAGGAACTACTGTGGTCCGCTCACTATTTATGCCTATGGTGACACAAC 365
Query 384 TCAAATCCCTTCCTCTGTACAACAAGCTCTCTCTTCCACCGGCGTA-TCTCTCAATCACG 442
|| || ||||| | | | | ||||| | | ||||| || ||| | | | |
Sbjct 366 TC---TCTCTTCCACCGG-CGT-AT-CTCTCAAT-C-ACCGGTTTAATCTTT-ATT---G 413
Query 443 TCCCTGCCGTCTCTAATGGCTTAATTATTCTCTATGTTCTTGAT----GATG--G-TGAG 495
| || ||||||||||||| | || ||||||||||||||| |||| | ||||
Sbjct 414 TG--TG--GTCTCTAATGGCTCA-TT---CTCTATGTTCTTGATAAATGATGATGGTGAG 465
Query 496 CATTTAACAGGAGTAAAAGACGGGAGTGACAAGAAGCTCCTTGTAGATATCATGTT 551
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 466 AATTTAACAGGAGTAAAAGACGGGAGTGACAAGAAGCTCCTTGTAGACATCGTGTT 521
Score = 329 bits (178), Expect = 2e-89
Identities = 211/227 (93%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 787 GATTCTGCCTATGAGGTATCAAGACATTTGGGTCCTAAACAAGCTCAAGGGACCAAGAGG 846
||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GATTCTGGCTCTGAGGTTTTAAGACATTTGGGTCCTAAACAAGCTCAAGGGACCAAGAGG 609
Query 847 GGCCGGAGTTTTTGTGAATTATGCAATGTTTCTTGCTCAAACCATGATTTAACCGCTCAC 906
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 610 TGCCGGAGTTTCTGTGAATTATGCAATGTTTTTTGCTCAAACCATGATTTAACCGCTCAC 669
Query 907 CTCTCTGGTAGAAGGCACAGAGCTAACCCCGTGGACGCCCTCTTGTCAGTAATTCAACCG 966
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 670 CTCTCTGGTAAAAGGCACAGAACTAACCCCGTGGACGCCCTCTTGTCAGTAATTCAATCG 729
Query 967 AACCAAAGTATGCATGGTGCCGAGTTTGCCGTTTGC-GTTTCCGCAG 1012
||| ||||| |||||||||||||| ||||||| | | ||||||||||
Sbjct 730 AACAAAAGTTTGCATGGTGCCGAGATTGCCGTAT-CAGTTTCCGCAG 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5