BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61190.1
Length=3318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496271 jgi|Araly1|496271|fgenesh2_kg.8__2087__AT5G61190.1 1764 0.0
> Ahg496271 jgi|Araly1|496271|fgenesh2_kg.8__2087__AT5G61190.1
Length=2916
Score = 1764 bits (955), Expect = 0.0
Identities = 1307/1470 (89%), Gaps = 52/1470 (4%)
Strand=Plus/Plus
Query 164 ATGTCGACGGCGGAGGCGGATTACGTGAAGGCCAAAACATCGGTGTGGTGGGATATAGAG 223
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCCACGGCGGAGGCGGATTACGTGAAGGCCAAAACGTCGGTGTGGTGGGATATAGAG 60
Query 224 AATTGCGAGGTACCCAGAGGTTGGGATGCGCACGTGATTGCCTTGAATGTGAGTTCGTCT 283
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 61 AATTGTGAGGTACCCAGAGGTTGGGATGCGCACGTGATTGCCCAGAATGTGAGTTCGGCT 120
Query 284 TTGTTGAAGATGAATTATTGTGGACCTGTCTCAATTTCAGCTTATGGCGATACCAATCTC 343
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TTGTTGAAGATGAATTATTGTGGACCTGTCTCAATTTCGGCTTATGGCGATACCAATCTC 180
Query 344 ATCCCTCTCCATCATCAACAAGCACTTTCTTCTACTGGTGTTGCGCTTAATCACATCCCA 403
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 ATCCCTCTCCATCATCAACAAGCGCTTTCTTCTACTGGTGTTGCGCTTAATCACATTCCT 240
Query 404 GCAGGAGTGAAAGATGCGAGCGATAAGAAGATTCTGGTGGATATGTTGTTGTGGGCAATA 463
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 241 GCAGGAGTGAAAGATGCGAGCGATAAGAAGATTTTGGTGGATATGTTATTGTGGGCGATA 300
Query 464 GACAACCCTGCGCCAGCGAATTTATTGCTAATCTCTGGTGACAGAGACTTCTCTAACGCT 523
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 GACAACCCTGCCCCAGCGAATTTCTTGCTTATCTCTGGTGACAGAGACTTCTCTAACGCT 360
Query 524 CTCCATCAGCTAAGAATGAGGAGGTATAACATTCTTTTGGCTCAACCTCCACGAGCCTCT 583
||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTCCACCAGCTTCGAATGAGGAGGTATAACATTCTTTTGGCTCAACCTCCACGGGCCTCT 420
Query 584 GTGCCGCTTGTTGCTGCTGCCAGAGATGTTTGGCTCTGGACAGTCCTAGCCTCGGGAGGT 643
|||||||||||||||||||| | |||||| |||||||||||| ||||||||| ||||||
Sbjct 421 GTGCCGCTTGTTGCTGCTGCTAAAGATGTATGGCTCTGGACAACCCTAGCCTCCGGAGGT 480
Query 644 CCTCCTCTTACAAG-TGTTGAATCCTCTCTACTCTTTAACAATGGGGGTTTTCGTGTCTC 702
|||||||||||||| || ||||||||||||||||||| ||||||| || ||| ||||||
Sbjct 481 CCTCCTCTTACAAGTTG-TGAATCCTCTCTACTCTTTTGCAATGGGCGTATTCATGTCTC 539
Query 703 TAATAAAGGTGTGTCGAAACTTCCAGTTTCTGAACAAGCTCAGCCTAGCCAACCAACTGG 762
|||||||| ||||| ||||| ||| |||||||||||||||||||| ||||||||| ||||
Sbjct 540 TAATAAAGATGTGTTGAAACATCCGGTTTCTGAACAAGCTCAGCCCAGCCAACCACCTGG 599
Query 763 TTCAACTTCTAACGCTGGAGATACTAAGGATCATAAAACCAGAGAAAAGCA-TGTTCCAA 821
||| |||||||| ||| |||||||||||||| |||||||||||||| || | ||||||
Sbjct 600 TTCTACTTCTAAAGCT---GATACTAAGGATCACAAAACCAGAGAAAACCACT-TTCCAA 655
Query 822 GAGGATCACTTCAAGAAAATAGAAAAAATATGCTTCAGCATAGCAGTGGAGCCACAGGGG 881
||||||||| |||||| | |||||||||||| ||||| || |||| |||||||| || |
Sbjct 656 GAGGATCACCTCAAGAGACGAGAAAAAATATGTTTCAGAATGGCAGAGGAGCCACCGGTG 715
Query 882 AATCTGCTACTACCTGCAGAATATGCAATGTTGTATGTGATAGCTTTGAAAAGTTCACCG 941
|| || |||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 716 AACCTAATACTACTTGCAGATTATGCAATGTTGTATGTGATAGCTTTGAAAAATTCACCG 775
Query 942 CTCACCTTTCAGATATAAGGCATATATCTCAGGCTGCCATTGTAGAAAGTCGCAGAGCTC 1001
||||||| |||||||||||||||||||||||||||||| |||||| |||| ||| |||||
Sbjct 776 CTCACCTCTCAGATATAAGGCATATATCTCAGGCTGCCTTTGTAGGAAGTTGCAAAGCTC 835
Query 1002 AGGCCAGCGTTTCAGCCAAACCCATACATCAAGCAGTTCTTGTCGAACCTTTGTTGTGCA 1061
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 836 CGGCCAGCGTTTCAGCCAAACCCATACAGGAAGCAGTTCTTGTCGAACCTTTGTTGTGCA 895
Query 1062 AAGTTTGCCAGATCAGCTTTACCAACAATGATACATATAAAAATCACACCTATGGaaaaa 1121
||||||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||
Sbjct 896 AAGTTTGCCAGATAAGCTTTACCAACAAAGATGCATATAAAAGTCACACCTATGGAAAAA 955
Query 1122 aaCACCGAAACAATTTGGAACTGCAATCAGGTAAGTCCAAAAACATTTTGGTGGGACCAG 1181
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GACACCGAAACAACTTGGAACTGCAATCAGGTAAGTCCAAAAACATTTTGGTGGGACCAG 1015
Query 1182 CTGAGCCTTCCAAAGAGGTTCTAGAGAAACATAATATGAATAAGAAGGTGATGATTGAGA 1241
||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||| |
Sbjct 1016 CTGAGCCGTCCAAGGAGGTTCTAGAGAAACATAAGAAGAATAAGAAGGTGTTGATTGA-A 1074
Query 1242 G-TAGAGCTCAGGCAAACGCTGAATTCGTTTGTC-TTATGTGCAATGTGGTGTGCCAGAG 1299
| ||||||| || |||||||||| |||| ||||| || ||||||||||||||||||||||
Sbjct 1075 GGTAGAGCTAAGACAAACGCTGATTTCGCTTGTCGTT-TGTGCAATGTGGTGTGCCAGAG 1133
Query 1300 TCAGATTGTCTTTAATTCTCATCTGCGCGGTAAGAAGCATGCCAACATGCTGAGTCAATC 1359
||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 1134 TCAGATTGTCTTTGATTCTCATCTGCGGGGTCAGAAGCATGCTAACATGCTGAGTCAATC 1193
Query 1360 AGAGGCACT-------CA-----T-TGT--TTCTACA-AAGCTTCAAGAGAAAGGAGTCG 1403
||||||| | || | | | ||||| | ||||||||||||||| | ||||
Sbjct 1194 AGAGGCAATGTTGGATCAGGCACTCTTTGATTCTA-ATAAGCTTCAAGAGAAATGTGTCG 1252
Query 1404 GAGAAAAAGAACAACCAAGTGAAACAGTTGCAGAGCTTCAGTTGCAGTCTCAAAAGGCTC 1463
||||||| | |||||| | |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1253 GAGAAAAGGTTCAACCAGGAGAAACATTTGCAGAGCCTCAGTTGCAGTCTCAAAAGGCTC 1312
Query 1464 AAGAGAA------G--C----AG--G--T--ACTAGTTGATTCTAAGAAGCTTCCAGAGA 1505
| ||||| | | || | | ||||||||||||||| ||||||| ||||
Sbjct 1313 ACGAGAATACCAAGTGCTTTGAGAAGCATGTACTAGTTGATTCTAAAAAGCTTCAAGAGC 1372
Query 1506 AAGGTGATGAAGTAAAGGGTCAACCAAAAGAAATGACTGCACTGCGTAATGCAAGT-GCT 1564
||| || ||||| ||||| |||||||| ||||| ||||||| || ||| | || | |||
Sbjct 1373 AAGCTGTTGAAGAAAAGGATCAACCAAGTGAAATAACTGCACAGCCTAAAGTAA-TCGCT 1431
Query 1565 AAATACAT-T-TGTCGTATGTGCAATGTGG 1592
||| ||| | |||||| ||||||||||||
Sbjct 1432 AAA--CATGTATGTCGTTTGTGCAATGTGG 1459
Score = 1048 bits (567), Expect = 0.0
Identities = 734/815 (90%), Gaps = 9/815 (1%)
Strand=Plus/Plus
Query 1672 GGCACTCATTGATTCTAAGAAGCTTCAAGAGAAAGGTTTCGGAGAAAAAGAACAACCAAG 1731
|||||| ||||||||| |||||||||||||||||||| |||||||||| || ||||||||
Sbjct 1458 GGCACTTATTGATTCTCAGAAGCTTCAAGAGAAAGGTGTCGGAGAAAAGGATCAACCAAG 1517
Query 1732 AGAAACAATTGTAGAGCCACAGTTGCAGTCTCAAAACGCTCAAGAGAATAGCAAGTGTTT 1791
||||||| |||||||||| ||||| ||| ||||||||||||||||||||| ||| ||||
Sbjct 1518 AGAAACAGTTGTAGAGCCTCAGTTCCAGCCTCAAAACGCTCAAGAGAATAACAATTGTTA 1577
Query 1792 CGAAAAGCATGTTGTCATGGTGAATCAATCAGAGGTACTCATCAATGCGAGTAAGCTTGA 1851
|| |||||||||||||||||||||||||||||||| |||||| |||| || ||||||||
Sbjct 1578 CGGAAAGCATGTTGTCATGGTGAATCAATCAGAGGAACTCATTTATGCTAGGAAGCTTGA 1637
Query 1852 AGAGAAAGATGCCCAAGAAAAAGCTCAACCAATAGAATCAATAGCCGAACCTCAGTCGCA 1911
||||||||||| || | | |||||||||||| |||| |||| || ||||||||||||||
Sbjct 1638 AGAGAAAGATGTCC--G-AGAAGCTCAACCAAAAGAAACAATTGCAGAACCTCAGTCGCA 1694
Query 1912 GTCTCAAAACACTCAAGAGCATACCAAATTCTTTGAGAAGCAAAACGAAGAGTTGAGAAA 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GTCTCAAAACACTCAAGAGCATACCAAATTCTTTGAGAAGCAAAACGAAGAGTTGAGAAA 1754
Query 1972 GATTTGTGGCACTTTAGAAAGCAGTGTAAAAGAACCTCTTCCAAGTACTAAGGACTGGGT 2031
|||||||||||| | |||||||||||||||||||| | |||||||||| || ||| | ||
Sbjct 1755 GATTTGTGGCACATCAGAAAGCAGTGTAAAAGAACTTTTTCCAAGTACCAAAGACCGTGT 1814
Query 2032 GGAGACTCTTAACAAACAGATTCCAAATGGAGAATTTTTCTTTGGTGACCTAAGATCTGA 2091
|||||| ||||||||||||||||||||| ||||||||| ||||||||| ||| |||||
Sbjct 1815 CGAGACTGTTAACAAACAGATTCCAAATGCAGAATTTTTGTTTGGTGACATAATTTCTGA 1874
Query 2092 TTTTGAAGTACCCAG-GGAAGCAAGTGAATGTTT-TGATGGCATTGTCAAGCCTGT-AAA 2148
|||||||||| |||| ||| ||||| |||| ||| || |||||||||||||||||| |||
Sbjct 1875 TTTTGAAGTAGCCAGAGGA-GCAAGAGAAT-TTTCTGGTGGCATTGTCAAGCCTGTGAAA 1932
Query 2149 CCTTTCCAAAGGAGAAACTAAGCATTCATGGGAGGCCGCCTTTGTAGCCAGCAATGGTTC 2208
| | |||||||||| |||| ||||||| ||||||||||||||| |||| || ||||| |
Sbjct 1933 C-TCTCCAAAGGAGCAACTGTGCATTCAAGGGAGGCCGCCTTTGGAGCCGGCGATGGTGC 1991
Query 2209 TCAGTCCAGCGTTTCAACCAATCCTTTGAAGGAACCAGAGGGTTTGCAGCCCGTGTGGTG 2268
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 1992 TCAGTCCAGCGTTTCAACCAAACCTATGAAGGAACCAGAGGGTTTGCAGCCTGTGTGGTG 2051
Query 2269 CCAAGTCTGCCAGATCAGCTGCAACAGCAAGGTTGCATTTGCAAGTCACACATATGGGAA 2328
|||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct 2052 CCAAGTCTGCCAGATCAGCTGCAACAACAAGGTTGTATATGCAAGTCACACCTATGGGAA 2111
Query 2329 AAAACACCGACAGAACTTGGAATCACAATCAGCCAAGAACGAAACTATGTCTACTGGACC 2388
|||||| ||||||||| |||||| |||||||||||| ||||||| |||||||| |||||
Sbjct 2112 AAAACATCGACAGAACATGGAATTACAATCAGCCAAAAACGAAAATATGTCTAAGGGACC 2171
Query 2389 AGGCAAGCTTTCTAAAGATTATGGAGAAAAAACGAAGAAAGTATCATGCAAAAACCAAAC 2448
|| |||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||
Sbjct 2172 AGCCAAGCTTTCTAAAGATTATGGAGAGAAAACGAAGAAAGTACCACGCAAAAACGAAAC 2231
Query 2449 CACATTTGATTCTCAACTGAAGAGTCAGAACCATT 2483
|| |||||||||||||||||||||||||||||||
Sbjct 2232 AACCTTTGATTCTCAACTGAAGAGTCAGAACCATT 2266
Score = 765 bits (414), Expect = 0.0
Identities = 488/524 (93%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 2678 GAATTGAACCAAGAAAAACATAGAGAAGCACTGGAGCAGTTCAGTATTGACTCAAGGATA 2737
||||| |||||||||||| ||||||||| |||||||||||| | ||||||| |||| |
Sbjct 2395 GAATTCTACCAAGAAAAACCGAGAGAAGCATTGGAGCAGTTCATTGTTGACTCGAGGACA 2454
Query 2738 ATCCGAGAAGAAACCGATCAAGAAAAAGAAGCAACAGAGGAGCAGACACTTGTAAAGATG 2797
| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 2455 ACCCGAGAAGAAACCGACCAAGAAAAAGAAATAACAGAGGAGCACACACTTGTAAAGATG 2514
Query 2798 GATGATCTTGGGTTTCGAGGGGCACCAGAAGATAAAGTGGAACTGAAGGAGAGACACA-C 2856
|||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| | |
Sbjct 2515 GATGATGTTGGGTTTCGAGGGGCACTAGAAGATAAAGTGGAATTGAAGGAGAGACA-AGC 2573
Query 2857 CGTATCTGAGAACTTGGTGCACCGTGTCTTCACTGAACAGAATCGAGAGTCTAGAATACC 2916
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2574 CGTATCTGAGAATTTGGTGCACCGTGTCTTCACTGAACAGAATCGAGAGTCTAGAATCCC 2633
Query 2917 CAATGAACCGAGAGGATGTTTAGATGTGATTCCTGAGAGAGTAAAACTGCCACCAAACGT 2976
||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||
Sbjct 2634 CAATGAACCGAGAGGATGTTTGGATGTGATTCCTGAGAGAGTAGAAGTGCCACCAAATGT 2693
Query 2977 GAATGTGGCCAAGAATTTGGAAGATGAGCAGAAGCATAAACCCGAACCAAAAGCACAGGA 3036
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2694 TAATGTGGCCAAGAATTTGGAAGATGAGCCGGAGCATAAACCCGAACCAAAAGCACAGGA 2753
Query 3037 AGCCGAAAACAAGTCTGGAGGACGCAAGGATCTTCCTGGAGAGGCTGCCAAAAGGGAAGA 3096
| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2754 ACCCGAAAACAAGTCTGCAGGACGCAAGGATCATCCTGGAGAGGCTGCCAAAAGGGAAGA 2813
Query 3097 GATTAAGGGCCAAGCTGATAACTTTTGGACTCGCCTTTGGGGGAAAAAA-TATTAAAATA 3155
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2814 GATTAAGGGCCAAGCTGATAACTTTTGGACTCGCCTTTGGGGGAAAAAGGT-TTAAAATA 2872
Query 3156 ATGTGAATTGTTAATTCATGTTTAAGTTGTCAACAATGGATGTT 3199
|||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 2873 ATGTTAATTGTTAATTCATGTTTATGTTGTCAACAATGGATGTT 2916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125247472743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5