BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61200.3
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332363 jgi|Araly1|332363|fgenesh1_pm.C_scaffold_8001706 1415 0.0
> Ahg332363 jgi|Araly1|332363|fgenesh1_pm.C_scaffold_8001706
Length=1125
Score = 1415 bits (766), Expect = 0.0
Identities = 885/942 (94%), Gaps = 9/942 (1%)
Strand=Plus/Plus
Query 319 AGGTTGGAACTGAATGCGAATTCGTTGTCAGAGTCTCGTTTAGAAGATAAGAGAAGAATT 378
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 AGGTTGGAACTGAATGCGAATTCGTTGTCAGAGTCTTGTTTAGAAGATAAGAGAAGAATT 183
Query 379 CAGATGTTGGAGAAAGAATTGTTGAATTGCTACCAGGAGATTGATTATTTGCGGGATCAA 438
||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 CAGATATTGGAGAAGGAACTGTTGAATTGCTACCAAGAGATTGATTATTTGCGGGATCAA 243
Query 439 GTAAACTTCAGAAGCCAGGAAATGAACGACCTGAGTGAACATGTACTCGATCTTGAAGTC 498
|||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 244 GTAAGTTTCAGAGGCCAGGAAATGAACGACCTGAGTGAACATGTGCTTGATCTTGAAGTC 303
Query 499 AGAGTAACTAAATCAGGGAAATTGGAAGAAGAAGTTAACTATTTGAGGGAGGAGTTGTGT 558
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AAAGTAACTGAATCAGGGAGATTGGAAGAAGAAGTTAACTATTTGAGGGAGGAGTTGTGT 363
Query 559 TCGTCGAAATCTGAGCAGCTATTGTTGTTGCAAGAACTGGAGAGCACAGAAACTGAGCTA 618
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 364 ACGTCGAAATCTGAGCAACTATTGTTGTTGCAAGAACTGGAGAGCGCAGAAACTGAGCTA 423
Query 619 CAGTTTTCTTTGTTTTCTGTTGAGAAGCTGGAGGAGTCGGTCTCATCCTTAACATTGGAG 678
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 424 CAGTTGTCTTTGTTTTCTGTTGAGAAGCTGGAGGAGTCTTTCTCATCCTTAACATTGGAG 483
Query 679 TCTCAGTGTGAGATAGAAAGCATAAAACTTGATATAGTAGCGTTGGAGCAGGCGCTCTTT 738
|||||||| |||||||||||||| ||||| ||||||| |||||||||| || ||||||||
Sbjct 484 TCTCAGTGCGAGATAGAAAGCATGAAACTCGATATAGCAGCGTTGGAGGAGACGCTCTTT 543
Query 739 GATGCTCAGAAATTTCAAGGTGAAAGCATCCAAGAAAACGATAAGTTAAGAGAAATAGTC 798
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||
Sbjct 544 GATGCTCAGAAATTTCAAGGAGAAAGCATCCAAAAAAACGATAAGTTAAGAGAAGTAGTC 603
Query 799 AAGGAGCTACGGTTGAACTCTCGAGAGGCAGAAGAGAATGCTGAGTGTTTAGAGAAGCAA 858
||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct 604 AAGGAGCTACGGTTGAAGTCTCAAGAGGCAGAAGAGAATGCTGAGTGCTTAGAGAAGCAA 663
Query 859 AACAAGGAGCTGATGGAGAGATGTGTAGCCTCTGAAAGGAATATCAAAGACTTACGTCAA 918
||||| |||||||||||||||| |||| ||||||||||||||||||||| ||| |||||
Sbjct 664 AACAAAAAGCTGATGGAGAGATGGGTAGACTCTGAAAGGAATATCAAAGAATTATGTCAA 723
Query 919 AGCTTTAGAGGAA-GGTTGGAAAGTGAAAGTGAAGC-GCCTGTAAAT-C-CA-GATTGTT 973
||||||||| ||| |||||||||||||| ||||||| | |||||||| | | || ||||
Sbjct 724 AGCTTTAGA-GAACGGTTGGAAAGTGAAGGTGAAGCAG-CTGTAAATGCAGAGGAATGTT 781
Query 974 TCCATGACATCATCAAGAAATTAGAGGTTTTCCAG-GATGGGAAACTGAGAGACAAAATG 1032
||||||| ||||||||||||||||||| ||||| | |||| |||||||||||||||||||
Sbjct 782 TCCATGAGATCATCAAGAAATTAGAGG-TTTCCCGAGATGCGAAACTGAGAGACAAAATG 840
Query 1033 GAAGATATGGCAAGACAGATACTTCAATACAAAGATCTTGTAAAGCAGCTCAAGGATGAG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAGATATGGCAAGACAGATACTTCAATACAAAGATCTTGTAAAGCAGCTCAAGGATGAG 900
Query 1093 TTGAAAGAAGAGAAACTAAAGGCCAAGGAAGAAGCAGAGGACTTAACACAAGAAATGGCT 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 TTGAAAGAAGAGAAACTAAAGGCCAAGGAAGAAGCAGAGGACTTAACACAAGAGATGGCT 960
Query 1153 GAATTAAGATATGAAATGACATGTTTATTGGAGGAAGAATGCAAGCGGCGTGCATGCATC 1212
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAACTAAGATATAAAATGACATGTTTATTGGAGGAAGAATGCAAGCGGCGTGCATGCATC 1020
Query 1213 GAACAAGCATCATTACAAAGAATAGCCAATCTAGAAGCACAG 1254
||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1021 GAACAAGCATCATTACAGAGAATAGCCAATCTAGAGGCACAG 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5