BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61210.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950876 jgi|Araly1|950876|scaffold_802763.1 1485 0.0
> Ahg950876 jgi|Araly1|950876|scaffold_802763.1
Length=945
Score = 1485 bits (804), Expect = 0.0
Identities = 900/947 (95%), Gaps = 3/947 (0%)
Strand=Plus/Plus
Query 285 TGATATTATCCTGAGAGACAATGTTTGGTTTAAGGAAATCACCGGCAAATCTTCCCAAGC 344
||||||| | |||||||| |||||||||||| |||||||||||||| |||||||||||||
Sbjct 1 TGATATTTTTCTGAGAGAAAATGTTTGGTTTGAGGAAATCACCGGCTAATCTTCCCAAGC 60
Query 345 ATAACTCAGTCGACCTCAAGTCTTCCAAGCCAAATCCTTTCGATTCAGATGATGAATCT- 403
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 ATAACTCTGTCGATCTCAAGTCTTCCAAGCCAAATCCTTTCGATTCAGATGATGAAT-TG 119
Query 404 GACAACAAACATACCCTTAACCCTTCTAAGAGGACTACCTCTGAACCCTCTTTGGCTGAT 463
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 120 GACAACAAACATACCCTTAACCCCTCTAAGAGGACTACCTCTGAACCATCTTTGGCTGAT 179
Query 464 ATGACAAACCCTTTTGGTGGTGAGAGAGTTCAGAAAGGAGATAGTAGTTCATCCAAACAG 523
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 180 ATGACAAACCCTTTTGATGGTGAGAGAGTTGAGAAAGGATATAGTAGTTCATCGAAACAG 239
Query 524 TCATTGTTTTCGAACTCCAAATACCAGTACAAGAACAATTTCCGTGATTCTGGTGGTATT 583
|||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 240 TCATTGATTTCGAACTCGAAATACCAGTACAAGAACAATTTCCGTGATTCCGGAGGTATC 299
Query 584 GAAAACCAGTCGGTTCAGGAGCTTGAAGGTTATGCTGTGTACAAGGCTGAAGAGACTACG 643
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 300 GAAAACCAGTCCGTTCAGGAGCTTGAAGGTTATGCTGTCTACAAGGCTGAAGAGACGACG 359
Query 644 AAATCTGTACAAGGTTGTTTGAAGGTAGCAGAAGATATAAGGTCTGATGCTACCAGAACT 703
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 360 AAATCTGTACACGGTTGTTTGAAGGTAGCAGAAGATATTAGGTCAGATGCTACCAGAACT 419
Query 704 TTGGTCATGTTACACGATCAGGGCGAGCAAATCACTAGGACGCACCATAAAGCCGTTGAA 763
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 420 TTGGTCATGTTACACGAGCAGGGCGAGCAAATCACAAGGACGCACCATAAAGCTGTTGAA 479
Query 764 ATCGACCATGATCTCAGTCGTGGTGAGAAACTTCTTGGAAGCCTTGGAGGCATGTTTTCA 823
||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 480 ATCGATCAGGATCTCAGTCGAGGTGAGAAGCTTCTTGGAAGCCTTGGAGGCATGTTTTCA 539
Query 824 AAGACTTGGAAACCAAAGAAGACTCGTCCTATAAATGGTCCCGTCGTAACCAGAGATGAC 883
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 540 AAGACTTGGAAACCAAAGAAGACTCGTCCTATAAATGGTCCTGTCATAACCAGAGATCAC 599
Query 884 TCACCAACGAGAAGAGTTAACCACTTAGAGAAAAGGGAAAAACTGGGACTGAACTCAGCA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCACCAACGAGAAGAGTTAACCACTTAGAGAAAAGGGAAAAACTGGGACTGAACTCAGCA 659
Query 944 CCCAGAGGACAATCAAGAACCCGAGAACCACTCCCCGAATCAGCTGATGCTTATCAGAGA 1003
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 660 CCCAAAGGACAATCAAGAACCCGAGAACCGCTCCCCGAATCAGCTGATGCCTATCAGAGA 719
Query 1004 GTGGAGATGGAAAAAGCTAAGCAAGACGATGGGCTTTCAGACTTGAGTGATATACTCGGC 1063
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 720 GTGGAGATGGAAAAGGCTAAGCAAGACGACGGGCTTTCAGACTTGAGTGATATACTGGGG 779
Query 1064 GAGCTAAAGAACATGGCTGTTGACATGGGAAGCGAAATCGAGAAGCAGAACAAAGGACTT 1123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 GAGCTAAAGAACATGGCTGTTGACATGGGAAGCGAAATCGAGAAGCAGAATAAAGGACTT 839
Query 1124 GACCATCTTCATGATGATGTTGACGAACTCAACTTCAGAGTGCAACAATCAAACCAACGT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GACCATCTTCATGATGATGTTGACGAACTCAACTTCAGAGTGCAACAATCAAACCAACGT 899
Query 1184 GGTCGCCGTTTGCTTGGAAAGTAGATGAACAGAGGGTTTATATGTTC 1230
|| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 900 GGACGCCGTTTGCTTGGAAAGTAGATGAACAGAGAGTT-ATATGTTC 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5