BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G61220.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496275 jgi|Araly1|496275|fgenesh2_kg.8__2091__AT5G61220.1         586    7e-167


> Ahg496275 jgi|Araly1|496275|fgenesh2_kg.8__2091__AT5G61220.1
Length=522

 Score =  586 bits (317),  Expect = 7e-167
 Identities = 434/486 (89%), Gaps = 25/486 (5%)
 Strand=Plus/Plus

Query  76   CAGGCTTTGTATAATTAAGGGTTAGTTTCCAATCTTGCAATGGTGTCTAGTAGTGAAGTT  135
            ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  1    CAGGCTTTGTATAATAAAGGGTTAGTTTCCAATCTTGCAATGGTATCTAGAAGTGAAGTT  60

Query  136  CTTAGCCTATGTCGTGCCTTGCTTCGAGCGGGACGTCAATTCCCTGATTACAACATTAGG  195
            || ||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct  61   CTCAGCCTCTGTCGTGCCCTGCTTCGAGCCGGACGTCAATACCCTGATTACAACATTAGG  120

Query  196  GAGTACAGTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCA  255
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAGTACACTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCA  180

Query  256  TCGAAGGTGACTGAGGCTTATGCTGAAGCTAAAAAACAGCTTTTTGTTGCTGAGAGAGTG  315
            |||||||||| ||||||||||||||||||||||  ||||||| | |||||||||||||||
Sbjct  181  TCGAAGGTGAATGAGGCTTATGCTGAAGCTAAAGCACAGCTTGTGGTTGCTGAGAGAGTG  240

Query  316  CTCAAGGTTTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAG  375
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTCAAGGTCTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAG  300

Query  376  TAGATACATTATACAAGTGAAGAAGAGGACATTGTG-GA-ATATATCCCTTGGATT-GTA  432
            |||||||||||| |||||||||||| ||||| |||| || | || | | ||||||| | |
Sbjct  301  TAGATACATTAT-CAAGTGAAGAAGTGGACACTGTGAGAGAAAT-TAC-TTGGATTAG-A  356

Query  433  GCTGAGGA-AGACTAAAGGGAATGAAGAGTTCCTGGtttttttGTTCTTTTGAATAATCT  491
            || ||  | |||||||||| ||||||||||||||||                ||||||||
Sbjct  357  GCAGAA-ATAGACTAAAGGAAATGAAGAGTTCCTGG----------------AATAATCT  399

Query  492  CACATGATTGTGCAGTTGTTGCATAACATATGTTCCAACTTGTCTGGAGTTTCTGTATTC  551
            |||| |||| |||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  400  CACACGATTATGCACTTGTTGGATAACAAATGTTCCAACTTGTCTGGAGTTTCTGTATTC  459

Query  552  TTATGT  557
            ||||||
Sbjct  460  TTATGT  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5