BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61240.2
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496278 jgi|Araly1|496278|fgenesh2_kg.8__2094__AT5G61240.1 1400 0.0
Ahg496280 jgi|Araly1|496280|fgenesh2_kg.8__2096__AT5G61250.2 63.9 3e-09
> Ahg496278 jgi|Araly1|496278|fgenesh2_kg.8__2094__AT5G61240.1
Length=1406
Score = 1400 bits (758), Expect = 0.0
Identities = 826/857 (96%), Gaps = 12/857 (1%)
Strand=Plus/Plus
Query 643 TAC-AAACCTGAGGTGGAATAAACTACAAGATGTGATCCCTCCCGAGATTGGGGAGCTGA 701
||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 547 TACTAAACCTGAGGTGGAATAAGCTACAAGATGTGATTCCTCCCGAGATTGGGGAGCTGA 606
Query 702 AGAGACTAACCCATTTGTACTTGAGCTTCAATAGCTTC-AAGGGAGAAATTCCCAAGGAA 760
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 607 AGAGACTAACCCATTTGTACTTGAGCTTCAATAGCTTCAAAGGG-GAAATTCCCAAGGAA 665
Query 761 CTAGCTGCTCTTCCCGAGCTTCGGTATCTATACCTTCAAGAAAACCGTCTCATTGGTAGA 820
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 666 CTGGCTGCTCTTCCCGAGCTTCGGTATCTATATCTTCAAGAAAACCGTCTCATTGGTAGA 725
Query 821 ATTCCTGCCGAACTGGGGACT-CTGCAAAACCTTCGCCACCTAGATGTTGGTAACAACCA 879
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 726 ATTCCTGCAGAACTGGGGA-TGCTGCAAAACCTTCGCCACCTAGATGTTGGTAACAACCA 784
Query 880 TTTGGTGGGAACTATACGGGAGCTCATCCGTTTTGATGGAAGTTTCCCAGCTCTTCGCAA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTTGGTGGGAACTATACGGGAGCTCATCCGTTTTGATGGAAGTTTCCCAGCTCTTCGCAA 844
Query 940 CTTGTACTTGAATAATAACTATTTGAGTGGAGGGATTCCTGCTCAGCTGTCAAATCTTAC 999
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 845 CTTGTACTTGAATAATAACTATTTGAGTGGAGGGATCCCTGCTCAGCTGTCAAATCTTAC 904
Query 1000 AAACTTAGAGATTGTTTACCTGTCTTACAACAAATTTATTGGAAACATTCCTTTTGCCAT 1059
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 905 AAACTTAGAGATTGTTTACCTGTCTTACAACAAATTTATAGGAAACATTCCTTTTGCCAT 964
Query 1060 TGCTCATATTCCTAAACTGACATACCTGTACCTTGATCACAACCAATTTACCGGGAGAAT 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGCTCATATTCCTAAACTGACATACCTGTACCTTGATCACAACCAATTTACCGGGAGAAT 1024
Query 1120 CCCAGACGCATTCTACAAGCATCCATTCCTCAAAGAAATGTACATTGAAGGCAACATGTT 1179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CCCAGACGCATTCTACAAGCACCCATTCCTCAAAGAAATGTACATTGAAGGCAACATGTT 1084
Query 1180 CAAGTCAGGCGTGAACCCAATTGGTACCCACAAAGTTTTAGAAGTTTCTGATGCCGATTT 1239
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1085 CAAGTCAGGCGTGAACCCTATTGGTACCCACAAAGTTCTAGAAGTTTCTGATGCCGATTT 1144
Query 1240 TGCCGTGTGACCGGATAGAAGATTCCAGGAAGGTTCTCGAGAAAACGTCTCAGAACCACC 1299
||| ||||||||||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 1145 TGCTGTGTGACCGGATAGAAGATTCTA-G-AGGTTCTCGAGAAAACGTCTCAGAACTACC 1202
Query 1300 TAGAGATTGTTCCACTTTAGCCCTCTTCACTATTATTATTTTTTGTATGGTCTGTGGATT 1359
|||| || |||||||||||| | ||||||||||||||||||||||||||||| | ||||
Sbjct 1203 TAGAAATGGTTCCACTTTAG-TC-CTTCACTATTATTATTTTTTGTATGGTCTATCGATT 1260
Query 1360 TGCAAATG---AAAGAAAGCATAAGACTACAAGTTTTTATCTTCATATTGTATAGTTAGA 1416
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGCAAATGAAAAAAAAAAGCATAAGACTACAAGTTTTTATCTTCATATTGTATAGTTAGA 1320
Query 1417 CACATTCCACTAATCTATATTTCTCCTTAATCAAATGATTATATATATTTAGATTGGAAT 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CACATTCCACTAATCTATATTTCTCCTTAATCAAATGATTATATATATTTAGATTGGAAT 1380
Query 1477 AAACCACTTCCAGTATA 1493
|||||||||||||||||
Sbjct 1381 AAACCACTTCCAGTATA 1397
Score = 863 bits (467), Expect = 0.0
Identities = 529/558 (95%), Gaps = 8/558 (1%)
Strand=Plus/Plus
Query 49 CAAAAAGAAAACATCCGGATCATTACCAGACCCGTCGGTGAGATAGCGGGTTTGAAATAC 108
||| |||||||||||||| || |||||| |||||||||||||| |||||||||| ||||
Sbjct 1 CAAGAAGAAAACATCCGGGTCGTTACCAAACCCGTCGGTGAGA-AGCGGGTTTG-GATAC 58
Query 109 ACGGTATTCGGTTTACGAATCTCAGGAGGAGGAAGAGAAAATAAAAATGAGTTTTTTAAT 168
|| |||||||||||||||||||||||| | | ||||||||||||||||| |||||||||
Sbjct 59 AC-GTATTCGGTTTACGAATCTCAGGA--A-GCAGAGAAAATAAAAATGACTTTTTTAAT 114
Query 169 TTCGCTCTCTTCTTAGATCCCGTTTGTTCTCTTTCTCACTTTGGCTGTTTAAGCAAAAAC 228
||||||| | ||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 115 TTCGCTCACCTCTTAGATCCCGTTTGTTCTC-TT-TCACTTTGGCTGTTCAAGCAAAAAC 172
Query 229 CATGGCTTCTCGCTGTGAGCTACTTCTGATCTGCGTCTTCTCTCTCTTAATTGCTTTTGC 288
|||||||||||||||||||||||||||||||||| |||||||| |||| || |||||||
Sbjct 173 CATGGCTTCTCGCTGTGAGCTACTTCTGATCTGCATCTTCTCTATCTTGTTTTCTTTTGC 232
Query 289 TCACTCCAAGACATTGAAGCGAGATGTGAAAGCTTTGAATGAAATCAAAGCCTCTTTGGG 348
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 233 TCACTCCAAGACATTGAAGCGAGATGTGAAAGCTTTGAATGAAATTAAAGCCTCTTTGGG 292
Query 349 ATGGAGAGTGGTGTATTCATGGGTTGGTGACGATCCTTGTGGAGATGGAGACCTTCCACC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATGGAGAGTGGTGTATTCATGGGTTGGTGACGATCCTTGTGGAGATGGAGACCTTCCACC 352
Query 409 TTGGTCTGGTGTCACGTGTTCTACACAAGGAGACTATAGAGTTGTCACAGAATTAGAAGT 468
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 353 TTGGTCTGGTGTCACCTGTTCTACACAAGGAGACTATAGAGTTGTCACTGAATTAGAAGT 412
Query 469 TTATGCGGTTTCGATTGTTGGACCTTTCCCCATTGCAGTAACAAACCTTCTGGATTTGAC 528
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 413 TTATGCGGTTTCGATTGTTGGACCTTTCCCCATTGCAGTAACAAACCTTTTGGATTTGAC 472
Query 529 TAGACTGGATCTACATAACAACAAGTTGACTGGTCCAATCCCTCCACAAATTGGACGACT 588
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 473 TAGACTGGATCTACATAACAACAAGTTGACTGGTCCAATCCCTCCCCAAATTGGGCGACT 532
Query 589 GAAACGGCTGAAAGTACT 606
||||||||||||||||||
Sbjct 533 GAAACGGCTGAAAGTACT 550
> Ahg496280 jgi|Araly1|496280|fgenesh2_kg.8__2096__AT5G61250.2
Length=1891
Score = 63.9 bits (34), Expect = 3e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1460 TATATTTAGATTGGAATAAACCACTTCCAGTATA 1493
||||||||||||||||||||||||||||||||||
Sbjct 1891 TATATTTAGATTGGAATAAACCACTTCCAGTATA 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5