BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61250.2
Length=1909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496280 jgi|Araly1|496280|fgenesh2_kg.8__2096__AT5G61250.2 2841 0.0
Ahg497509 jgi|Araly1|497509|fgenesh2_kg.665__2__AT5G61250.2 1138 0.0
Ahg350042 jgi|Araly1|350042|fgenesh1_pg.C_scaffold_6000635 898 0.0
Ahg496278 jgi|Araly1|496278|fgenesh2_kg.8__2094__AT5G61240.1 108 2e-22
> Ahg496280 jgi|Araly1|496280|fgenesh2_kg.8__2096__AT5G61250.2
Length=1891
Score = 2841 bits (1538), Expect = 0.0
Identities = 1792/1910 (94%), Gaps = 35/1910 (2%)
Strand=Plus/Plus
Query 1 TCAACTCCAAGAACAAAAAGCAC-CTCTGCTCTGTTTTGAGATCCA---A--C--CACAG 52
||||| ||||||||||| | | | |||||||||||||||||||||| | | || ||
Sbjct 1 TCAACGCCAAGAACAAAGA-C-CTCTCTGCTCTGTTTTGAGATCCAGCTACTCTTCAAAG 58
Query 53 TTCAAACTAATCAAAAGTCCCAATTTCTAACTTCAGTCTAGGC-TTTTTCTCTCCA-T-G 109
||||||||||||||||||||| |||||| ||||||||| | || |||||||||| | |
Sbjct 59 TTCAAACTAATCAAAAGTCCCGATTTCTTACTTCAGTCCA-GCTTTTTTCTCTCAAGTCA 117
Query 110 GATCCTTGATTCTGAGATCAACCAATCGAAAGAAACCAAAATGGGCTTCAACGTTGTTGT 169
||| || | | | ||||||||||||| | |||||||||||||||| || | |||||
Sbjct 118 GAT-TTTCA-TATCAGATCAACCAATC---A-AAACCAAAATGGGCTTTAA-G--GTTGT 168
Query 170 GTTCTTGAGTTGTCTGCTTCTACTTCCTCCTGTTACTTTTGGTAGCAACATGGAACGAAC 229
|||||||| || |||| |||||| | ||||||||||||||| |||||||||||||||||
Sbjct 169 GTTCTTGATTTCTCTGTTTCTAC-T--TCCTGTTACTTTTGGCAGCAACATGGAACGAAC 225
Query 230 CACCTTGGTTATAGACGGCT-CACGTCGAATCGCTGAGACCGATGAGAACTTTATCTGCG 288
|||||||||||||||||| | ||| | |||||||||||||||||||||||||| ||||||
Sbjct 226 CACCTTGGTTATAGACGG-TGCACATGGAATCGCTGAGACCGATGAGAACTTTGTCTGCG 284
Query 289 CAACGCTTGATTGGTGGCCACCTGAAAAATGCAACTATGATCAATGTCCTTGGGGTTACG 348
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 285 CAACGCTTGATTGGTGGCCACCTGAAAAATGTAACTATGATCAGTGTCCTTGGGGTTACG 344
Query 349 CATCTCTCATCAATTTGAACTTAGCTTCTCCTCTTCTTGCTAAAGCTATTCAAGCTTTTA 408
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 345 CTTCTCTCATTAATTTGAACTTATCTTCTCCTCTTCTTGCTAAAGCTATTCAAGCTTTTA 404
Query 409 GGACGTTGAGGATAAGAATAGGTGGTTCCTTGCAAGATCAAGTGATCTACGACGTTGGAG 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 405 GGACGTTGAGGATAAGAATAGGTGGTTCCTTGCAAGATCAAGTGATCTACGACGTAGGAG 464
Query 469 ACTTGAAGACTCCTTGCACTCAGTTCAAGAAAACTGACGACGGATTGTTCGGATTCTCTG 528
||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||
Sbjct 465 ACTTGAAGACTCCTTGCACTCAGTTTGAGAAGACAGACGATGGATTGTTCGGATTCTCTA 524
Query 529 AAGGATGTTTGTATATGAAACGTTGGGACGAAGTTAACCATTTCTTCAACGCAACGGGAG 588
|||||||||||||||||||||| ||||||||| |||||| |||||| || ||||| ||||
Sbjct 525 AAGGATGTTTGTATATGAAACGCTGGGACGAACTTAACCGTTTCTTTAATGCAACCGGAG 584
Query 589 CTATTGTGACTTTCGGTTTGAACGCGCTGCACGGGAGAAATAAACTCAACGGAACTGCGT 648
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 585 CTATTGTGACTTTCGGTTTGAACGCGTTGCACGGGAGAGATAAACTCAACGGAACTGCGT 644
Query 649 GGGGAGGTGATTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAGG 708
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GGGGAGGAGACTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAGG 704
Query 709 GTTATGCTATAGACTCGTGGGAGTTTGGTAATGAGCTTAGTGGAAGCGGGATTTGGGCAA 768
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 705 GTTATGCTATAGACTCGTGGGAGTTAGGTAACGAGCTTAGTGGAAGCGGGATTTGGGCAA 764
Query 769 GCGTGAGTGTAGAGCTTTATGGGAAAGACTTGATTGTACTGAAAAATGTAATCAAGAACG 828
|||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 765 GCGTGAGTGTAGAGCTCTATGGGAAAGACTTGATTCTACTGAAAGATGTAATCAATAACG 824
Query 829 TTTACAAGAATTCTAGAACCAAGCCTTTGGTTGTAGCTCCAGGTGGATTCTTTGAAGAAC 888
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTTACAAGAATTCTCGGACCAAGCCTTTGGTTGTAGCTCCAGGTGGATTCTTTGAAGAAA 884
Query 889 AATGGTACTCGGAGCTTCTTCGGCTCTCTGGGCCTGGTGTTCTTGATGTCCTGACTCATC 948
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 885 AATGGTACTCGGAGCTTCTTCGGCTCTCTGGACCCGGTGTTCTTGATGTCCTGACTCATC 944
Query 949 ATATATACAATCTTGGTCCAGGGAATGATCCTAAGCTAGTGAATAAGATACTAGATCCAA 1008
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 945 ATATATACAATCTTGGTCCAGGGAATGATCCTATGCTAGTGAATAGGATACTAGATCCAA 1004
Query 1009 ATTACTTGAGCGGAATTTC-GGAATTATTCGCGAATGTGAACCAAACAATTCAAGAACAT 1067
||||||||||||||||||| |||| ||| || ||||| |||| ||||||||||||||||
Sbjct 1005 ATTACTTGAGCGGAATTTCAGGAA-CATTTGCCAATGTAAACCGAACAATTCAAGAACAT 1063
Query 1068 GGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTGGTGGAGCCTTTAACAGTGGTGGCCGT 1127
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1064 GGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTGGTGGAGCCTTTAACAGCGGTGGCCAT 1123
Query 1128 CAGGTTTCCGAGACATTCATTAACAGTTTCTGGTACTTAGATCAGCTCGGTATTTCGTCG 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CAGGTTTCCGAGACATTCATTAACAGTTTCTGGTACTTAGATCAGCTCGGTATTTCGTCG 1183
Query 1188 AAGCATAACACCAAAGTATACTGCAGACAAGCTTTGGTCGGAGGTTTCTACGGTCTGCTT 1247
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1184 AAGCATAACACCAAAGTATACTGCAGACAAGCTTTGGTTGGAGGTTTCTACGGTCTGCTC 1243
Query 1248 GAAAAGGAAACGTTTGTTCCAAATCCAGATTACTACAGCGCGCTTCTTTGGCATCGTTTG 1307
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GAAAAGGAAACGTTTGTTCCCAATCCAGATTACTACAGCGCGCTTCTTTGGCATCGTTTG 1303
Query 1308 ATGGGTAAAGGCATTCTCGGCGTTCAGACGACTGCCTCGGAGTATCTACGAGCTTACGTT 1367
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1304 ATGGGTAAAGGCGTTCTCGGCGTTCAGACAACTGCCTCGGAGTATCTACGAGCTTACGTT 1363
Query 1368 CATTGCTCCAAAAGAAGAGCGGGTATAACGATTCTTCTGATCAATCTGAGTAAGCACACG 1427
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1364 CATTGCTCCAAAAGAAGAGCGGGTATAACGATTCTTCTGATCAATCTGAGTAAGAACACG 1423
Query 1428 ACGTTTACAGTCGCAGTCAGCAATGGCGTGAAGGTGGTTTTGCAAGCAGAAT-CGATGAA 1486
|||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 1424 ACGTTTACGGTCGCAGTCAGCAATGGCGTGAAGGTTGTTTTGCAAGCAG-ATACGATGAA 1482
Query 1487 GAGGAAATCGTTCT-TGGAAACAATCAAGAGCAAGGTTTCTTGGGTTGGAAACAAAGCTT 1545
||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1483 GAGGAAATC-TTTTCTGGAAACAATCAAGAGCAAGGTTTCTTGGGTCGGAAACAAAGCTT 1541
Query 1546 CGGACGGATATTTGAACAGAGAAGAGTATCACTTGAGTCCCAAAGACGGTGACTTGCGTA 1605
|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1542 CGGATGGATATTTGAACAGAGAAGAGTATCACTTGAGTCCGAAAAACGGTGACTTGCGTA 1601
Query 1606 GCAAGATAATGCTCTTGAATGGTAAACCTTTGGTACCGACAGCCACCGGAGATATCCCAA 1665
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1602 GCAAGATAATGCTCTTGAATGGTAACCCTTTGGTACCGACAGCCACCGGAGATATCCCAA 1661
Query 1666 AGCTTGAGCCGGTCCGTCATGGTGTGAAATCTCCGGTTTATATCAATCCGCTGTCGATCT 1725
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGCTTGAGCCAGTCCGTCATGGTGTGAAATCTCCGGTTTATATCAATCCGCTGTCGATCT 1721
Query 1726 CTTTCATTGTGTTGCCTACCTTTGATGCTCCTGCTTGTTCTTGAAGAGGATGGTAACTGG 1785
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1722 CTTTCATTGTGTTGCCTACCTTTGATGCTCCTGCTTGTTCTTGAAGAGGATGGTTATTGG 1781
Query 1786 TGAAAATCAAACATTGAAGAACT-ACTGTAAATTTCTTGGCAATTGTATATATGATCGAT 1844
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||
Sbjct 1782 TGAAAATCAAACATTGAAGAACAGACCGTAAATTTCTTGGCAATTGTATATATTATCTAT 1841
Query 1845 GTAACACATACTATTGTATACTGGAAGTGGTTTATTCCAATCTAAATATA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GTAACACATACTATTGTATACTGGAAGTGGTTTATTCCAATCTAAATATA 1891
> Ahg497509 jgi|Araly1|497509|fgenesh2_kg.665__2__AT5G61250.2
Length=1478
Score = 1138 bits (616), Expect = 0.0
Identities = 739/794 (93%), Gaps = 25/794 (3%)
Strand=Plus/Plus
Query 743 GCTTAGTGGAAGCGGGATTTGGGCAAGCGTGAGTGTAGAGCTTTATGGGAAAGACTTGAT 802
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 703 GCTTAGTGGAAGCGGGATTTGGGCAAGCGTGAGTGTAGAGCTTGATGGGAAAGACTTGAT 762
Query 803 TGTACTGAAAAATGTAATCAAGAACGTTTACAAGAATTCTAGAACCAAGCCTTTGGTTGT 862
| |||||||| |||||||||| |||||||||||||||||| | |||| ||||||||||||
Sbjct 763 TCTACTGAAAGATGTAATCAATAACGTTTACAAGAATTCTCGGACCAGGCCTTTGGTTGT 822
Query 863 AGCTCCAGGTGGATTCTTTGAAGAACAATGGTACTCGGAGCTTCTTCGGCTCTCTGGGCC 922
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 823 AGCTCCAGGTGGATTTTTTGAAGAAAAATGGTACTCGGAGCTTCTTCGGCTCTCTGGACC 882
Query 923 TGGTGTTCTTGATGTCCTGACTCATCATATATACAATCTTGGTCCAGGGAATGATCCTAA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CGGTGTTCTTGATGTCCTGACTCATCATATATACAATCTTGGTCCAGGGAATGATCCTAT 942
Query 983 GCTAGTGAATAAGATACTAGATCCAAATTACTTGAGCGGAATTTC-GGAATTATTCGCGA 1041
||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| || |
Sbjct 943 GCTAGTGAATAGGATACTAGATCCAAATTACTTGAGCGGAATTTCAGGAA-CATTTGCCA 1001
Query 1042 ATGTGAACCAAACAATTCAAGAACATGGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTG 1101
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 ATGTAAACCGAACAATTCAAGAACATGGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTG 1061
Query 1102 GTGGAGCCTTTAACAGTGGTGGCCGTCAGGTTTCCGAGACATTCATTAACAGTTTCTGGT 1161
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GTGGAGCCTTTAACAGCGGTGGCCGTCAGGTTTCCGAGACATTCATTAACAGTTTCTG-- 1119
Query 1162 ACTTAGATCAGCTCGGTATTTCGTCGAAGCATAACACCAAAGTATACTGCAGACAAGCTT 1221
|| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 -CT-----C-G---G-TATTTCGTCGAAGCATAACACCAAAGTATACTGCAGACAAGCTT 1168
Query 1222 TGGTCGGAGGTTTCTACGGTCTGCTTGAAAAGGAAACGTTTGTTCCAAATCCAGATTACT 1281
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1169 TGGTTGGAGGTTTCTACGGTCTGCTCGAAAAGGAAACGTTTGTTCCCAATCCAGATTACT 1228
Query 1282 ACAG-C---GCGCTTCTTTGGCATCGTTTGATGGGTAAAGGCATTCTCGGCGTTCAGACG 1337
|||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1229 ACAGGCAACGCGCTTCTTTGGCATCGTTTGATGGGTAAAGGCGTTCTCGGCGTTCAGACA 1288
Query 1338 ACTGCCTCGGAGTATCTACGAGCTTACGTTCATTGCTCCAAAAGAAGAGCGGGTATAACG 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 ACTGCCTCGGAGTATCTACGAGCTTACGTTCATTGCTCCAAAAGAAGAGCGGGTATAACG 1348
Query 1398 ATTCTTCTGATCAATCTGAGTAAGCACACGACGTTTACAGTCGCAGTCAGCAATGGCGTG 1457
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1349 ATTCTTCTGATCAATCTGAGTAAGAACACGACGTTTACGGTCGCAGTCAGCAATGGCGTG 1408
Query 1458 AAGGTGGTTTTGCAAGCAGA-ATCGATGAAGAGGAAATCGTT-CTTGGAAACAATCAAGA 1515
|| || |||||||||||||| | ||||||||||||| || || || |||| || ||||||
Sbjct 1409 AATGTTGTTTTGCAAGCAGATA-CGATGAAGAGGAA-TCTTTTCT-GGAA-CACTCAAGA 1464
Query 1516 GCAAGGTTTCTTGG 1529
||||||||||||||
Sbjct 1465 GCAAGGTTTCTTGG 1478
Score = 867 bits (469), Expect = 0.0
Identities = 645/725 (89%), Gaps = 31/725 (4%)
Strand=Plus/Plus
Query 1 TCAACTCCAAGAACAAAAAGCAC-CTCTGCTCTGTTTTGAGATCCA---A--C--CACAG 52
||||| ||||||||||| | | | |||||||||||||||||||||| | | || ||
Sbjct 1 TCAACGCCAAGAACAAAGA-C-CTCTCTGCTCTGTTTTGAGATCCAGCTACTCTTCAAAG 58
Query 53 TTCAAACTAATCAAAAGTCCCAATTTCTAACTTCAGTCTAGGC-TTTTTCTCTCCA-T-G 109
||||||||||||||||||||| |||||| ||||||||| | || |||||||||| | |
Sbjct 59 TTCAAACTAATCAAAAGTCCCGATTTCTTACTTCAGTCCA-GCTTTTTTCTCTCAAGTCA 117
Query 110 GATCCTTGATTCTGAGATCAACCAATCGAAAGAAACCAAAATGGGCTTCAACGTTGTTGT 169
||| || | | | ||||||||||||| | |||||||||||||||| || | |||||
Sbjct 118 GAT-TTTCA-TATCAGATCAACCAATC---A-AAACCAAAATGGGCTTTAA-G--GTTGT 168
Query 170 GTTCTTGAGTTGTCTGCTTCTACTTCCTCCTGTTACTTTTGGTAGCAACATGGAACGAAC 229
|||||||| || |||| |||||| | ||||||||||||||| |||||||||||||||||
Sbjct 169 GTTCTTGATTTCTCTGTTTCTAC-T--TCCTGTTACTTTTGGCAGCAACATGGAACGAAC 225
Query 230 CACCTTGGTTATAGACGGCT-CACGTCGAATCGCTGAGACCGATGAGAACTTTATCTGCG 288
|||||||||||||||||| | || | |||||||||||||||||||||||||| ||||||
Sbjct 226 CACCTTGGTTATAGACGG-TGGACATGGAATCGCTGAGACCGATGAGAACTTTGTCTGCG 284
Query 289 CAACGCTTGATTGGTGGCCACCTGAAAAATGCAACTATGATCAATGTCCTTGGGGTTACG 348
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 285 CAACGCTTGATTGGTGGCCACCTGAAAAATGTAACTATGATCAGTGTCCTTGGGGTTACG 344
Query 349 CATCTCTCATCAATTTGAACTTAGCTTCTCCTCTTCTTGCTAAAGCTATTCAAGCTTTTA 408
| |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 345 CTTCTCTCATTAATTTGAACTTATCTTCTCCTCTTCTTGCTAAAGCTTTTCAAGCTTTTA 404
Query 409 GGACGTTGAGGATAAGAATAGGTGGTTCCTTGCAAGATCAAGTGATCTACGACGTTGGAG 468
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 405 GGACGTTGAGGATAAGAATAGGTGCTTCCTTGCAAGATCAAGTGATCTACGACGTAGGAG 464
Query 469 ACTTGAAGACTCCTTGCACTCAGTTCAAGAAAACTGACGACGGATTGTTCGGATTCTCTG 528
||||||||||||||||||||||||| |||| || ||||| |||||||||||||||| |
Sbjct 465 ACTTGAAGACTCCTTGCACTCAGTTTGAGAAGACAGACGATGGATTGTTCGGATTCTATA 524
Query 529 AAGGATGTTTGTATATGAAACGTTGGGACGAAGTTAACCATTTCTT-CAACGCAACGGGA 587
|||||||||||||||||||||| ||||||||| |||||| |||||| || |||||| |||
Sbjct 525 AAGGATGTTTGTATATGAAACGCTGGGACGAACTTAACCGTTTCTTTCA-CGCAACCGGA 583
Query 588 GCTATTGTGACTTTCGGTTTGAACGCGCTGCACGGGAGAAATAAACTCAACGGAACTGCG 647
||||| || |||||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct 584 GCTATCGTTACTTTCGGTTTGGACGCGTTGCATGGGAGAGATAAACTCAACGGAACTGCG 643
Query 648 TGGGGAGGTGATTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAG 707
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 644 TGGGGAGGAGACTGGGATCATACCAACACTCAGGATTTCATGA-CTACACAGTCTCAAAG 702
Query 708 GGTTA 712
| |||
Sbjct 703 GCTTA 707
> Ahg350042 jgi|Araly1|350042|fgenesh1_pg.C_scaffold_6000635
Length=1587
Score = 898 bits (486), Expect = 0.0
Identities = 1241/1589 (78%), Gaps = 118/1589 (7%)
Strand=Plus/Plus
Query 252 CGTCGAATC-GCTGAGACCGATGAGAACTTTATCTGCGCAACGCTT-GATTGGTGGCCAC 309
|||||| || | ||||||||| ||||||||| |||| || || || || |||||||| |
Sbjct 46 CGTCGAGTCTG-TGAGACCGACGAGAACTTTGTCTGTGCCAC-ATTGGACTGGTGGCCTC 103
Query 310 CTGAAAAATGCAACTATGATCAATGTCCTTGGGGTTACGCATCTCTCATCAATTTGAACT 369
||| || ||||||||||| |||||||||||||||||| | || | |||||| || | |
Sbjct 104 ATGACAAGTGCAACTATGACCAATGTCCTTGGGGTTACTCTTCAGTTATCAATATGGATT 163
Query 370 TAGCTTC-TCCTCTTCTTGCTAAAGCTATTCAAGCTTTTAGGACGTTGAGGATAAGAATA 428
|| | || ||| |||||| ||||||||||||||||||| | | | ||||||||||||||
Sbjct 164 TAAC-TCGTCCCCTTCTTACTAAAGCTATTCAAGCTTTCAAGCCATTGAGGATAAGAATT 222
Query 429 GGTGGTTCCTTGCAAGATCAAGTGATC-TACGACGTTGGAGACT-TGAAGACTCCTTGCA 486
||||||||||||||||||||||| | | |||||||| ||| | | | || |||||||||
Sbjct 223 GGTGGTTCCTTGCAAGATCAAGT-AACGTACGACGTAGGA-AATCTCAAAACTCCTTGC- 279
Query 487 C-T-CAGTT-CAAGAAAACTG-ACGA-CGGATTGTTCGGATTCTCTGAAGGATGTTTGTA 541
| | || || ||| |||| || || | ||| ||||| ||||||||| ||||||| ||| |
Sbjct 280 CGTCCA-TTCCAA-AAAA-TGAAC-AGCGGTTTGTTTGGATTCTCTAAAGGATGCTTGCA 335
Query 542 TATGAA-ACGTTGGGACGAAG-TTAACCA-TTTCTTCAA-CGCAACGGGAGCTATTGTGA 597
||||| | | ||||||| || | || || |||| | || |||||| ||||| | ||||
Sbjct 336 CATGAAGA-GATGGGACG-AGCTCAA-CAGTTTCCT-AACCGCAACCGGAGCGGTAGTGA 391
Query 598 CTTTCGGTTTGAACGCGCTGCA-CGGGAGAAATAAACTCAACGGAACTGCGTGGGGAGGT 656
| |||||||| ||||| || | |||||| | |||||| ||||| |||||||| ||
Sbjct 392 CATTCGGTTTAAACGCTTTG-AGTGGGAGACACAAACTCCGCGGAAAGGCGTGGGGTGGG 450
Query 657 GATTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAGGGTTATGCT 716
| |||||||| | |||||||| |||||||| ||||| ||||||||||||||||| | |
Sbjct 451 GCGTGGGATCACATAAACACTCAAGATTTCATAAACTATACAGTCTCAAAGGGTTACGTT 510
Query 717 ATAGACTCGTGGG-A------------GTT-T-GG--T----AATGAGCTTAGTGGAAGC 755
|| || || |||| | ||| | || | || ||||| |||||||||
Sbjct 511 ATTGATTCTTGGGAATTCGGTTTCCTTGTTCTCGGTATAGGAAACGAGCTGAGTGGAAGC 570
Query 756 GGGATTTGG-GCAAGCGTGAGTGTAGAGCTTTATGGGAAAGACTTGATTGTACTGAAAAA 814
||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 571 GGG-GTTGGTGCAAGCGTGAGCGCAGAGCTTTATGGGAAAGACTTGATTGTACTGAAAGA 629
Query 815 TGTAATCAAGAAC-GTTTACAAGAATTCT-AG-AAC-CAAGCCTTTGGTTGTAGCTCCAG 870
||||||||| || ||||| || |||||| | || ||||||| | |||| ||||| |
Sbjct 630 TGTAATCAA-CACAGTTTATAAAAATTCTCGGTTACACAAGCCTATACTTGTCGCTCCTG 688
Query 871 GTGGATTCTTTGAAGAACAATGGTACTCGGAGCTTCTTCGGC-TCTCTGGGCCTGGTGTT 929
| || |||| |||| ||||||||||| | | ||||||| | |||| || |||||||||
Sbjct 689 GAGGGTTCTATGAACAACAATGGTACACCAAACTTCTTC-ACATCTCCGGTCCTGGTGTT 747
Query 930 CTTGATGTCCTGACTCATCATATATACAATCTTGGTCCAGGGAATGATCCTAAGCTAGTG 989
| || ||| |||||||||||||||||||||||||| |||| ||||||||| ||| |||
Sbjct 748 GTCGACGTCGTGACTCATCATATATACAATCTTGGTTCAGGTAATGATCCTGCGCTTGTG 807
Query 990 AATAAGATACTAGATCCAAATTACTTGAGC--GGAATTTCGGAATTATTCGCGAATGTGA 1047
|| |||||| | ||||| | |||||| ||| || || | || ||| | | ||||
Sbjct 808 AAGAAGATAATGGATCCGAGTTACTTAAGCCAGGTAT--CAAAAACGTTCAAGGACGTGA 865
Query 1048 ACCAAACAATTCAAGAACATGGACCTTGGGCTGCTGCTTGGGTTGGAGAAG-CTGGTGGA 1106
| || || |||||||||||||||| |||||| || ||||||||||||| | ||||||||
Sbjct 866 ATCAGACGATTCAAGAACATGGACGGTGGGCTTCTCCTTGGGTTGGAGA-GTCTGGTGGA 924
Query 1107 GCCTTT-AACAGTGGTGGCCGTCAGGTTTCCGAGACATTCATTA-ACAGTTTCTGGTA-C 1163
|| || || |||||||| ||||| ||||| || |||||||| | | ||||||||||| |
Sbjct 925 GC-TTACAATAGTGGTGGTCGTCATGTTTCTGATACATTCAT-AGATAGTTTCTGGTATC 982
Query 1164 TTAGATCAGCTCGGTATTTCGTCGAAGCATA-A-CACCAAAGTATACTGCAGACA-AGCT 1220
| ||||||||| || || ||| ||| | ||| | ||| ||||| ||||||||||| | ||
Sbjct 983 T-AGATCAGCTTGGAATGTCGGCGA-G-ATACAACACTAAAGTTTACTGCAGACAGA-CT 1038
Query 1221 TTGGTCGGAGG-TTTCTACGGTCT-GCTTGAAAAGGAAACGTTTGTTCCAAATCCAGATT 1278
||||| ||||| ||| ||||| || ||| ||||||| ||| |||||||||||||| ||||
Sbjct 1039 TTGGTTGGAGGGTTT-TACGG-CTTGCTCGAAAAGGGAACATTTGTTCCAAATCCTGATT 1096
Query 1279 ACTACAGCGCGCTTCTTTGGCATCGTTTGATGGGTAAAGGCATTCTCGGCG-TTCAGAC- 1336
|||| || ||||| |||||||||||||| ||||| ||||| |||| | || |||| ||
Sbjct 1097 ACTATAGTGCGCTGCTTTGGCATCGTTTAATGGGAAAAGGGGTTCTTG-CGGTTCAAACA 1155
Query 1337 GACTG--CCTCGGAGTATCTACGAGCTTACGTTCATTGCTCCAAAAG-AAGAGCGGGTAT 1393
|| || || | | | ||||||| ||| | ||||| || ||||| |||||| ||| |
Sbjct 1156 GA-TGGACCGCC-AC-AGCTACGAGTTTATGCACATTGTTC-AAAAGGAAGAGCCGGTGT 1211
Query 1394 AACGATT-CTTCTGATCAATCTGAGTAAGCACAC-G-ACGTTTACAGTC-GCAGTCAGCA 1449
|| ||| |||||||| ||||| || || || | | | ||||| || | |||||||
Sbjct 1212 GAC-ATTGCTTCTGATAAATCTAAGCAATCA-ATTGGAT-TTTACGGTTAGT-GTCAGCA 1267
Query 1450 ATGGCGTGAAGGTGGTTTTGCAA-GCAGAATCGATG-AAGAGGAAATCGTTCTTGGAAAC 1507
||||| | ||||| |||||| || || ||||||| | |||| ||| || || ||||| ||
Sbjct 1268 ATGGCATAAAGGTTGTTTTG-AATGCGGAATCGA-GCAAGAAGAAGTCATTGTTGGATAC 1325
Query 1508 AATCAAGAG-CAAGGTTTCTTGGGTTGGAAACAAAGCTTCGGACGGATATTTGAACAGAG 1566
| || || | | |||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1326 TTTAAAAAGACCAT-TTTCTTGGATTGGAAGCAAAGCTTCGGATGGATATTTGAACAGAG 1384
Query 1567 AAGAGTATCA-CTTGAGTCCC-AAAGACGGTGACTTGC-GTAGCAAGATAATGCTCTTGA 1623
|||||||||| || || || ||| ||||||| |||| | ||||| | |||| ||||||
Sbjct 1385 AAGAGTATCATCT-GACACCAGAAA-ACGGTGAGTTGCAG-AGCAAAACAATGATCTTGA 1441
Query 1624 ATGGTAAACCTTTGGTACCGACAGCCACCGGAGATATCCCAAAGC-TTGAGCCGGTCCGT 1682
|||||||| | || |||||| | || ||||||||||| | || |||| ||||||| |
Sbjct 1442 ATGGTAAATCGTTAAAACCGACGGTAACAGGAGATATCCCGA-GCCTTGAACCGGTCC-T 1499
Query 1683 CA-TGGTGTGAAATCTCCGGTTTATATCAAT-CCGCTGTCGATCTCTTTCATTGTGTTGC 1740
| ||||| ||| |||||| || || || | || ||||||| || |||||||||||||
Sbjct 1500 CCGTGGTGCGAACTCTCCGCTTAATGTCT-TGCCATTGTCGATGTCGTTCATTGTGTTGC 1558
Query 1741 CTACCTTTGATGCTCCTGCTTGTTCTTGA 1769
||| ||||||||| |||||||||| |||
Sbjct 1559 CTAATTTTGATGCTTCTGCTTGTTCATGA 1587
> Ahg496278 jgi|Araly1|496278|fgenesh2_kg.8__2094__AT5G61240.1
Length=1406
Score = 108 bits (58), Expect = 2e-22
Identities = 58/58 (100%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1852 ATACTATTGTATACTGGAAGTGGTTTATTCCAATCTAAATATATATAATCATTTGATT 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 ATACTATTGTATACTGGAAGTGGTTTATTCCAATCTAAATATATATAATCATTTGATT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71723931335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5