BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61260.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496281 jgi|Araly1|496281|fgenesh2_kg.8__2097__AT5G61260.1 1868 0.0
> Ahg496281 jgi|Araly1|496281|fgenesh2_kg.8__2097__AT5G61260.1
Length=1500
Score = 1868 bits (1011), Expect = 0.0
Identities = 1333/1480 (90%), Gaps = 56/1480 (4%)
Strand=Plus/Plus
Query 52 ACAAACCCTCCGAAGATGTCTGAAGA-AG-GC-TCTTTGGAAACAGTACGTGTAAAGGAT 108
||||| ||||||||||||||| |||| || | ||| |||||||||||||||||||||||
Sbjct 37 ACAAATCCTCCGAAGATGTCTAAAGAGAGTACTTCTGTGGAAACAGTACGTGTAAAGGAT 96
Query 109 GTGGAAAATGTGGAAGATGTTATAGCTGTGGTAGCCAAGGATCAAGAAGAGATTATACCA 168
|||||||||| |||||||||| || |||||||| |||||| |||||||||||||||||||
Sbjct 97 GTGGAAAATGCGGAAGATGTTGTATCTGTGGTATCCAAGGGTCAAGAAGAGATTATACCA 156
Query 169 GAGATTATTGAAGTGCCTAAGCCTCAAGGTGGGACTTTGAGACGCCA-T-T-C--G-AC- 221
||||| | ||||||||||||||| |||||| |||||||||||| || | | | | ||
Sbjct 157 GAGATCAATGAAGTGCCTAAGCCAGAAGGTGTGACTTTGAGACGTCATTCTACTGGAACA 216
Query 222 -T-GG-A-ACGA-TAA-GTAAACCGCAGGTTCAGTCCCGTTATCGTGGGAATCATCGTGT 275
| || | |||| || | |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 217 ATAGGTACACGAGCAACG-AAACCGCAGGTTCAGTCCCGCTATCGCGGGAATCATCGTGT 275
Query 276 GGGTTCGACTCATGATTTATGTAAACATGGGAAGAAATGTGATCAAGATGATGCTGTGAA 335
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 276 GGGTTCGACTCATGATTTATGTAAACATGGGAAGAGGTGTGATCAAGATGATGCTGTGAA 335
Query 336 GCCGTGGAAGATTGCAAGGAGAAAGAGTGTTGAAGGTTCAGTTGTGATCAAAGTTGAGAC 395
||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 336 ACCGTGGAAGATGGTTAGGAGAAAGAGTGTTGAAGGCTCAGATGTGATCAAAGTTGAGAC 395
Query 396 ACCAAGTTCGACAAGGAAGTCATTGGGGAGTGTGAGTAGACAGAGTCCAGGTATAACCAA 455
||||||| |||||||||||||||||| |||||||||||||||| ||| || | |||||
Sbjct 396 TCCAAGTTTGACAAGGAAGTCATTGGGAAGTGTGAGTAGACAGATTCC-GG-GT-ACCAA 452
Query 456 ACCGGATAGTTCTGTTTCTGCAAAGAGAGATGCCTTGGCTGTGAAGAA-AAAACCATGTG 514
||| || |||||||| |||||||||||||||| ||| |||| || || |||||||||||
Sbjct 453 ACCAGAGAGTTCTGTGTCTGCAAAGAGAGATGTGTTGTCTGTCAA-AAGAAAACCATGTG 511
Query 515 CTTCTGTGAATTCAGAATCTAGCTCCAAAGAAGGTAGTGAGATAGCGAAATCTGTTGATG 574
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 512 CTTCTGTGAATTCAGAATCTAGCTCCAAAGAAGGTAGTGAGATAACGAGATCTGTTGATG 571
Query 575 GTTTAAGCGTTAAAAGCAATGATAGAGCGCGGAAGAATAAAGAAACCGAGAGTGGTCTGA 634
|||||||||||||||||||||| || |||| |||||||||||||| ||||| | ||| |
Sbjct 572 GTTTAAGCGTTAAAAGCAATGACAGGGCGCCGAAGAATAAAGAAAGCGAGATTACTCTAA 631
Query 635 GTGGTTCAGCTGTTGTTAAGAAGGTTCCT-GCCTTGAGAACTGATAAGTCAAGTACTTC- 692
||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||||||
Sbjct 632 GTGGTTCAGCTGTTGTTAAGAAGGTTCCTAG-CTTGAGAAATGACAAGTCTAGTACTTCT 690
Query 693 ------------T-----A-C-G-GGCGTTGGAAGTTCTAAGGTTTGTGCTCCAAAGAAT 732
| | | | ||||||||||||||||||||||||||||||||||||
Sbjct 691 ATAGAGAAGGTTTCAAAGATCAGTGGCGTTGGAAGTTCTAAGGTTTGTGCTCCAAAGAAT 750
Query 733 CTGAAGAATGTGGAGAAGGCAAAGACGACTCAGACAATTAGCGGTGAAGATGTAAAAGAA 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 CTGAAGAATGTGGAGAAGGCAAAGACGACTCAGACAATTAGCGGTGAAGATGTAAAAGAG 810
Query 793 AAGACTGTGTGTGTTGTTGAATCTAGCGTCAAAGGTGTTAAGAGTGAAAAGCAACCATCA 852
||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||| ||||||
Sbjct 811 AAGACTGTGTGCGTTGTTGAATCAAGCGTTAAAGGTGTTAAGGGTGAGAAGCACCCATCA 870
Query 853 TCTGAGAAGAAAACCATGAAAAGTGGGAATAAAAGCTTGAGTACTACTCCTAAACGTGGT 912
| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 871 TATGAGAAGAAAACCATGAAAAGTGGGCATAAAAGCTTGA---CTACTCCTATACGTGGT 927
Query 913 TCTAGTCCTACAAAACAGATTCCTGGTAAAATCAGTACCGGTTTGACTAAGAAGAAAGAA 972
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TCTAGTCCTACTAAACAGATTCCTGGTAAAATCAGTACCGGTTTGACTAAGAAGAAAGAA 987
Query 973 ACTGGCT-CTGCAGACGTTGTTGAAGCAAATCCAAAACCGGAGAAGAAGGTTAGGCCTAA 1031
| || | |||| || |||| |||||||||| ||||| |||| |||| ||||||||||
Sbjct 988 AGTGA-TACTGCGGAAGTTG---AAGCAAATCCGAAACCCGAGAGGAAGATTAGGCCTAA 1043
Query 1032 GAAGACAGGAGTAAAGGTGAGTCTAGCTCAGCAGATGACTTTCAAGAAAGGAAAGGTTCT 1091
||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 1044 GAAGACAGGAGCAAAGGTGACTCTAGCTCGGCAGCTGACTTTCAAGAAAGGAAAGGTTCT 1103
Query 1092 TGATCCTAAACCCGAGGATTCTTCTCCGAGATGGATCAAGTTCAAAAAGAGGGTGGTGCA 1151
||| || |||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 1104 TGAGCCGAAACCCGAGGATTCTTCTCCGAAATGGATCAAGTTCAGAAAGAGGGTTGTGCA 1163
Query 1152 GGAACTGAAAACGCAATCCGAAGGGAAGAAGAAGAATCTTAAAGATAGAAGATTGGGTGT 1211
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1164 GGAACTGAAAACGCAATCCGAAGGGAAGAAGAAGAATCTGAAAGATAGAAGATTGGGTGT 1223
Query 1212 TGAGACGAAAACAGATTCTTGTGAAGGAAGTAAACGTGAGAAAGTTGTTCTGAGGCATCG 1271
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TGAGACGAAATCTGATTCTTGTGAAGGAAGTAAACGTGAGAAAGTTGTTCTGAGGCATCG 1283
Query 1272 AAAAGTAGAAGGGAAGAAGAAAATGATAACATTGTTTAACAATGTGATTGAGGAGACAGT 1331
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1284 AAAAGTAGAAGGGAAGAAGAAAATGATAACATTGTTCAACAATGTGATTGAGGAGACTGT 1343
Query 1332 GAATAAGCTAACAAAGGTGAGGAAGCACAAAGTGAAAGCTCTTATTGGTGCTTTTGAAAC 1391
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GAATAAGCTAACAAAGGTGAGAAAGCACAAAGTGAAAGCTCTTATTGGTGCTTTTGAAAC 1403
Query 1392 TGTTATCTCTCTTCAGGACACTAATAAGACATCTCACAAACCTCAGAGCAAGGCCACAAC 1451
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct 1404 TGTTATCTCTCTTCAGGACACTAA---GACATCTCTTAAACCTCAGAGCAAAGCCACGAC 1460
Query 1452 ATCTGCTTCTAAGGTTAGACCTTTGGTCTCCGAACAATGA 1491
|||||| ||||||||||||||||||||||||||||| |||
Sbjct 1461 ATCTGCGTCTAAGGTTAGACCTTTGGTCTCCGAACAGTGA 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5