BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61270.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358332 jgi|Araly1|358332|fgenesh1_pg.C_scaffold_8002119 1622 0.0
> Ahg358332 jgi|Araly1|358332|fgenesh1_pg.C_scaffold_8002119
Length=1221
Score = 1622 bits (878), Expect = 0.0
Identities = 1040/1114 (93%), Gaps = 27/1114 (2%)
Strand=Plus/Plus
Query 164 GTCGAATTATGGAGTTAAAGAGCTCACATGGGAAAATGGGCAACTAACCGTTCATGGTCT 223
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 GTCGAATTATGGAGTGAAGGAGCTCACATGGGAAAATGGGCAATTAACCGTTCATGGTCT 179
Query 224 AGGCGACGAAGTAGAACCAACCACCTCGAATAACCCTATTTGGACTCAAAGTCTCAACGG 283
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 AGGCGAAGAAGTCGAACCAACCACCTCGAATAACCCTATTTGGACCCAAAGTCTCAACGG 239
Query 284 TTGTGAGACTTTGGAGTCTGTGGTTCATCAAGCGGCTCTACAGCAGCCAAGCAAGTTTCA 343
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 240 ATGTGAGACTTTGGAGTCTGTGGTTCATCAAGCGGCTCTTCAGCAGCCAAGCAAGCTTCA 299
Query 344 GCTGCAGAGTCCGAATG----GTCCAAACCACAATTATGAGAGCAAGGATGGATCTTGTT 399
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTACAGAGTCC-TATGTTATCTCCAAACCACAATTATGAGAGCAAGGATGGATCTTGTT 358
Query 400 CAAGAAAACGCGGTTATCCTCAAG--A---A----ATGGACCGATGGTTCGCTGTTCAAG 450
|||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 359 CAAGAAAACGCGGTTATCCTCAAGAAATGGACGGTATGGACCGATGGTTCGCTGTTCAAG 418
Query 451 AGGAGAGCCATAGAGTTGGCCACAGCGTCACTGCAAGTGCGAGTGGTACCAATATGTCTT 510
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 419 AGGAGAGCCATAGAGTTGGTCACAGCGTGACTGCAAGTGCTAGTGGTACCAATATGTCTT 478
Query 511 GGGCGTCTTTTGAATCCGGTCGGAGCTTGAAGACAGCTAGAACCGGAGACAGAGACTATT 570
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGGCGTCTTTTGAATCTGGTCGGAGCTTGAAGACAGCTAGAACCGGAGACAGAGACTATA 538
Query 571 TCCGCTCTGGATCGGAAACTCAAGATACTGAAGGAGATGAACAAGAGACAAGAGGAGAAG 630
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 539 TCCGCTCTGGATCGGAAACTCAAGATACTGAAGGAGATGAACAAGAGACTAGGGGAGAAG 598
Query 631 CAGGTAGATCTAATGGACGACGGGGACGAGCAGCAGCGATTCACAACGAGTCCGAAAGGA 690
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGGGAGATCTAATGGACGACGGGGACGAGCAGCAGCGATTCACAACGAGTCCGAAAGGA 658
Query 691 GACGGCGTGATAGGATAAACCAGAGGATGAGAACACTTCAGAAGCTGCTTCCTACTGCAA 750
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 GACGACGTGATAGGATAAACCAGAGGATGAGAACACTTCAAAAGCTGCTTCCTACTGCAA 718
Query 751 GTAAGGCGGATAAAGTCTCAATCTTGGATGATGTTATCGAACACTTGAAACAGCTACAAG 810
||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| |
Sbjct 719 GTAAGGCGGATAAAGTCTCGATCTTGGATGATGTGATCGAACACTTGAAACAGTTACAGG 778
Query 811 CACAAGTACAGTTCATGAGCCTAAGAGCCAA-CTTGCCACAACAAATGATGATTCCGCAA 869
||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 779 CACAAGTTCAGTTTATGAGCCTAAGAGCTAATCT-GCCACAACAAATGATGATTCCGCAA 837
Query 870 CTACCTCCACCACAGTCAGTTCTCAGCATCcaacaccaacaacaacaacaacaacagcag 929
||||||||||| ||||||||||||| ||||||||||||||| |||||||| || |||
Sbjct 838 CTACCTCCACCCCAGTCAGTTCTCAACATCCAACACCAACAGCAACAACAGCA---GCA- 893
Query 930 cagcagcagcaacaacagcagcaacagTTTCAGATGTCGTTGCTTGCAACAATGGCAAGA 989
| || | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 894 -A-CA--A-CAACAACAGCAGCAACAGTTTCAGATGTCGTTGCTTGCAACAATGGCGCGA 948
Query 990 ATGGGAATGGGAGGTGGTGGAAATGGTTATGGAGGTTTAGTtcctcctcctcctcctccA 1049
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ATGGGAATGGGAAGCGGAGGAAATGGTTATGGAGGTTTAGTTCCTCCTCCTCCTCCTCCA 1008
Query 1050 CCAATGATGGTCCCTCCTATGGGTAACAGAGACTGCACCAACGGTTCTTCAGCCACATTA 1109
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1009 CCATTGATGGTCCCTCCTATGGGTAACAGAGACTGCACCAACGGTTCTTCAGCCACTTTA 1068
Query 1110 TCTGATCCATACAGCGCCTTTTTCGCACAGACAATGAATATGGATCTCTACAATAAAATG 1169
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 ACTGATCCGTACAGCGCCTTTTTCGCACAGACAATGAATATGGATCTCTACAATAAAATG 1128
Query 1170 GCAGCAGCTATCTATAGACAACAGTCTGATCAAACAACAAAGGTAAATATCGG-CATGCC 1228
|| ||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1129 GCTGCAGCGATCTATAGACAACAGTCTGATCAATCAACAAAGGTAAATA-CGGGCATGCC 1187
Query 1229 TTCAAGTTCTTCGAATCATGAGAAAAGAGATTAG 1262
||||||||||||||||| |||||||||||||||
Sbjct 1188 CTCAAGTTCTTCGAATCACGAGAAAAGAGATTAG 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5