BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61290.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496285 jgi|Araly1|496285|fgenesh2_kg.8__2101__AT5G61290.1 2063 0.0
Ahg325389 jgi|Araly1|325389|fgenesh1_pm.C_scaffold_6000609 989 0.0
> Ahg496285 jgi|Araly1|496285|fgenesh2_kg.8__2101__AT5G61290.1
Length=1431
Score = 2063 bits (1117), Expect = 0.0
Identities = 1309/1400 (94%), Gaps = 19/1400 (1%)
Strand=Plus/Plus
Query 39 AAAATGGTGTTAGTGATTACAGAGCCAATTAAGAGTCAATCAAAGACGGTATGTGTGATA 98
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATGGTGTTAGTGATAACAGAGCCAATTAAGAGTCAATCAAAGACGGTATGTGTGATA 60
Query 99 GGAGCAGGACCATCAGGGTTAGTGTCGGCGCGAGAGCTAAAGAAAGAAGGACATAAAGTG 158
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGCAGGACCATCCGGGTTAGTGTCGGCGCGAGAGCTAAAGAAAGAAGGACATAAAGTG 120
Query 159 GTGGTGATGGAGCAAAACCACGACGTAGGAGGTCAGTGGTTATACCAACCAAACGTAGAT 218
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GTGGTGATGGAGCAAAACAACGACGTAGGAGGTCAGTGGCTATACCAACCAAACGTAGAA 180
Query 219 GAAGAAGATACATTGGGAAAAACCAAAACCCTAAAAGTACATAGCAGTGTTTACTCATCC 278
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GAAGAAGATACATTGGGAAAAACCAAAATCCTAAAAGTACATAGCAGTGTTTACTCATCC 240
Query 279 TTGAGGTTAGCTTCACCCAGAGAGGTAATGGGTTTCTCTGATTTCCCCTTCATCGCGAAG 338
|||||||| ||||| || |||||||||||||||||||||||||| || |||| |||||||
Sbjct 241 TTGAGGTTGGCTTCGCCGAGAGAGGTAATGGGTTTCTCTGATTTTCCGTTCACCGCGAAG 300
Query 339 GAAGGAAGAGACTCGAGGAGATTCCCAGGGCATGAGGAGCTTTTGTTGTATCTTAAGGAT 398
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 301 GAAGGAAGAGACTCGAGGAGATTCCCGGGGCATGAGGAGCTTTGGTTGTATCTTAAGGAT 360
Query 399 TTTTGTCAAGTGTTTGGGTTAAGAGAGATGATTAGGTTTAATGTTAGGGTTGAGTTTGTG 458
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TTTTGTCAAGTGTTTGGGTTAAGAGATATGATTAGGTTTAATGTTAGGGTTGAGTTTGTG 420
Query 459 GGAATGGTGAATGAAgatgatgatgatgatgatgatgTGAAGAAATGGATGGTGAAGAGT 518
||||||||||||| | | |||||||||| ||| | | || ||||||||| ||||||
Sbjct 421 GGAATGGTGAATG-A-A-GATGATGATG-TGA--A---G-AG--ATGGATGGTAAAGAGT 468
Query 519 GTAAAGAA--A-AGTGGTGAGGTTATGGAAGAAGTGTTTGATGCTGTTGTTGTTGCCTCT 575
||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GTAGAGAAGGAGAGCGGTGAGGTTATGGAAGAAGTGTTTGATGCTGTTGTTGTTGCCTCT 528
Query 576 GGCCATTACTCTTATCCTAGATTGCCTACAATTAAAGGTATGGATTTGTGGAAGAGGAAG 635
||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||
Sbjct 529 GGCCATTACTCTTATCCTAGATTGCCTTCCATCAAAGGAATGGATTTGTGGAAGAGGAAG 588
Query 636 CAACTTCATAGCCATATATATAGAGTGCCTGAGCCTTTTTGTGATGAGGTAGTGGTGGTC 695
||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||| |||
Sbjct 589 CAACTTCATAGCCATATCTATAGAGTGCCTGATCCTTTTCGTGATGAGGTTGTGGTTGTC 648
Query 696 GTTGGATGCTCAATGAGTGGACAAGACATATCAATAGAGCTTGTGGAAGTGGCAAAGGAA 755
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 649 GTTGGATGCTCAATGAGTGGACAAGACATATCAATAGAGCTTGTGAAAGTGGCAAAGGAA 708
Query 756 GTTCATCTAAGTACCAAATCACTTGATATTCCTCCTGGCTTGTCCAAAGTCATTGAAAAA 815
|||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 709 GTTCATCTAAGTGCCAAATCACTTGAGATTCCTCCTGGCTTGACTAAAGTCATTGAAAAA 768
Query 816 CATCAAAATCTCCATCTTCATCCTCAGATTGAATCTCTGGAAGAAGATGGACGGGTCATT 875
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 769 CATCAAAATCTTCATCTTCATCCTCAAATTGAATCTCTAGAAGAAGATGGACGGGTCATC 828
Query 876 TTCGAAGATGGGTCTTGCATTGTAGCCGACACTATTTTATACTGTACCGGGTATGAGTAC 935
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 829 TTCGATGATGGGTCTTGTATTGTAGCCGACACTATTTTATACTGTACCGGGTATGATTAC 888
Query 936 AAATTTCCATTTCTTGAGAGCAAAGGAAGAGTAGAGATTGATGATAATAGAGTTGGACCA 995
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 889 AAATTGCCATTTCTTGAGAGCAAAGGAAGAGTAGAAATTGATGATAATAGAGTTGGACCA 948
Query 996 CTCTTCGAACATACTTTCTCTCCTTCTCTATCCCCTTTTCTCTCCTTTGTCGGAATCCCT 1055
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 949 CTCTTCGAACATACTTTCTCTCCTTATCTCTCCCCTTCTCTCTCCTTTGTCGGAATCCCT 1008
Query 1056 CGAAAGTTGATAGGGTTCCCATTCTTTGAATCACAAGCTAAATGGATTGCAAAGCTTTTG 1115
|||||||| || |||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 1009 CGAAAGTTAATTGGGTTCCCATTCTTCGAATCACAAGCGAAATGGATAGCGAAGCTTTTG 1068
Query 1116 TCAGGCAAAACTTCACTTCCTTCCTCTGATCAAATGATGCAATCAATCTCTGATTTCTAT 1175
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1069 TCAGGCAAAACATGTCTTCCTTCCTCTGATCAAATGATGCAATCAATCTCTGAATTCTAC 1128
Query 1176 CTCGCCAGAGAAGCTGACGGAATCCCTAAACGTAACACTCACGACATCGCCGATTTCAAT 1235
||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1129 CTCTCCAGAGAAGCTGACGGAATCCCAAAACGCAACACTCACGACATCGCCGATTTCAAT 1188
Query 1236 TATAGCGATAAATACGCGGATTACATCGGATTTCCACATCTGGAGGAATGGAGAAAGGTC 1295
||||||||||||||||| |||||||| |||||||||||| | || |||||||||||||||
Sbjct 1189 TATAGCGATAAATACGCCGATTACATTGGATTTCCACATTTAGAAGAATGGAGAAAGGTC 1248
Query 1296 TTGTGTTTATCGGCTATATTGAATTCCATCGAAAATCTAGAGACTTATCGTGACTCTTGG 1355
|||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1249 TTGTGTGTATCGGCTATAGTGAATTCCATCGAAAATCTGGAGACTTATCGTGATTCTTGG 1308
Query 1356 GACGATGATGATCTTCTTCAAGAAACTCTTCAAGACCCTTACTTTACCCAACTTTCAATT 1415
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1309 GACGACGATGATCTTCTTCAAGAAACTCTTCAAGACCCTTATTTTACCCAAGA---AATT 1365
Query 1416 CCTTCTGTTTGATAAAAACA 1435
|||||||||| | |||||||
Sbjct 1366 CCTTCTGTTTAA-AAAAACA 1384
> Ahg325389 jgi|Araly1|325389|fgenesh1_pm.C_scaffold_6000609
Length=1383
Score = 989 bits (535), Expect = 0.0
Identities = 1100/1360 (81%), Gaps = 90/1360 (7%)
Strand=Plus/Plus
Query 77 ATCAAAGACGGTATGTGTGATAGGAGCAGGACCATCAGGGTTAGTGTCGGCGCGAGAGCT 136
|||||||| ||||||||| || ||||| ||||| | ||| |||| ||||| | |||||
Sbjct 36 ATCAAAGAAGGTATGTGTTATCGGAGCTGGACCGGCGGGGCTAGTCTCGGCAAGGGAGCT 95
Query 137 AAAG-AAAGAAGGACATAAAGTGGTGGTGATGGAGCAAAACCACGACGTAGGAGGTCAGT 195
||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 96 -AAGAAAAGAAGGACACAAAGTGGTGGTGTTGGAGCAAAACGACGACGTAGGAGGTCAAT 154
Query 196 GGTTATACCAACCAAACGTAGATGAAGAAGATACATTGGGAA-AA--A------CCA-AA 245
|||| || |||||||||||||| ||||||||| |||| |||| || | | | |
Sbjct 155 GGTTGTATCAACCAAACGTAGAAGAAGAAGATCCATTAGGAAGAAGTAGTGGTTCTATTA 214
Query 246 ACCCT-AA---AA-GTACATAGCAGTGTTTACTCATCCTTGAGGTTAGCTTCACCCAGAG 300
| | || || || |||||||| ||||||| ||||||||| || | ||||| ||||
Sbjct 215 ATGGTGAACTTAAGGTCCATAGCAGCATTTACTCTTCCTTGAGGCTAACCTCACCGAGAG 274
Query 301 AGGTAATGGGTT-TCTCTGATTTCCCCTTCATCGCGAAGGAAGGAAGAGAC-TCGAGGAG 358
|| ||||||||| | || ||||| || || | |||||| |||| |||||| | ||||||
Sbjct 275 AGATAATGGGTTAT-TCGGATTTTCCGTTTTTGGCGAAGAAAGGGAGAGACAT-GAGGAG 332
Query 359 ATTCCCAGGGCATGAGGAGCTTTTGTTGTATCTTAAGGATTTTTGT-CAAGTGTTTGGGT 417
|| ||||||||| ||||||||| ||||||||||||||| ||| || || | |||||||
Sbjct 333 GTTTCCAGGGCATAAGGAGCTTTGGTTGTATCTTAAGGACTTTAGTGAAACT-TTTGGGT 391
Query 418 TAAGAGAGATGATTAGGTTTAATGTTAGGGTTGAGTTTGTGGGAATGGTGAATGAAgatg 477
||||||| |||||||||||||| ||||||||||||||||| | || ||| || | |
Sbjct 392 TAAGAGATATGATTAGGTTTAAGGTTAGGGTTGAGTTTGT----A-GGAGAA--AA-A-G 442
Query 478 atgatgatgatgatgatgTGAAGAAATGGATGGTGAAGAGTGTAA-AG-AA--AAGTGGT 533
| | || || |||||||||||||| ||||| |||| |||| || || || |||||||
Sbjct 443 A--A-GAAGAAGATGATGTGAAGAAGTGGATTGTGAGGAGT-AAAGAGAAACTAAGTGGT 498
Query 534 GAGGTTATGGAAGAAG-TGTTTGATGCTGTTGTTGTTGCCT-CTGGCCATTACTCTTATC 591
|||||||||||| || | ||||||||||||||||||| || |||| ||||||||| | |
Sbjct 499 AAGGTTATGGAAG-AGATCTTTGATGCTGTTGTTGTTG-CTACTGGTCATTACTCTCACC 556
Query 592 CTAGATTG-CCTACAATTAAAGGTATGGATT-TGTGGAAGAGGAAGCAACTTCATAGCCA 649
|||||||| ||| | |||||||| ||||||| | ||||| ||||||||| ||||||||||
Sbjct 557 CTAGATTGCCCT-CTATTAAAGGAATGGATTCT-TGGAAAAGGAAGCAAATTCATAGCCA 614
Query 650 TATATATAGAGTGCCTGAGCCTTTTTGTGATGAGGTAGTGGTGGTCGTT-GGATGCTCAA 708
| | || || |||||||| || ||| || ||||||| |||||||| ||| ||| |||||
Sbjct 615 TGTTTACAGGGTGCCTGATCCATTTAGTAATGAGGTGGTGGTGGTGGTTGGGA-ACTCAA 673
Query 709 TGAGTGGACAAGACATATCAATAGAGCTTGTGGAAGTGGCAAAGGAAGTTCATCTAAGTA 768
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 674 TGAGTGGACAAGACATATCAATGGAGCTTGTGGAAGTGGCAAAGGAAGTTCATTTAAGTG 733
Query 769 CCAA-ATCACTTGATAT-TCCTCCTGGC-TTGTCCAAAGTCATTGAAAAACA-TCAAAAT 824
|||| | |||||||||| || || |||| || |||||||||||| ||||| |||||
Sbjct 734 CCAAGA-CACTTGATATATCTTC-TGGCCTT-TCCAAAGTCATTTCCAAACACTCAAAC- 789
Query 825 CTCCATCTTCATCCTCAGATTGAATCTCTGGAAGAAGATGG-ACGGGTCATTTTCGAAGA 883
|| | | ||||||| |||||||||||| | || || ||||| | | |||||||| | ||
Sbjct 790 CTTCTTATTCATCCACAGATTGAATCTTTAGAGGATGATGGGA-GAGTCATTTTTGTGGA 848
Query 884 TGGGTCTTGCATTGTAGCCGACACTATTTTATACTGTACCGGGTA-TGAGTACAAATTTC 942
||| ||||| | || || || || |||||||| || |||||||| | |||||| ||||
Sbjct 849 TGGATCTTGGGTCGTCGCTGATACAATTTTATATTGCACCGGGTACTC-GTACAAGTTTC 907
Query 943 CATTTCTTGAGAGCAAAGGAAGAGTAGAGATTG-ATGATAATAGAGTTGGACCACTCTTC 1001
||||||||||||| ||||||||| |||| | || ||||| |||||||||| |||||||||
Sbjct 908 CATTTCTTGAGAGTAAAGGAAGAATAGA-AGTGGATGATGATAGAGTTGGTCCACTCTTC 966
Query 1002 GAACATACTTTCTCTCCTTCTCTATCCCCTTTTCTCTCCTTTGTCGGAATCCCTC-GAAA 1060
||||| |||||| |||||| ||| ||||||| ||||||||||||||| ||||| | ||||
Sbjct 967 GAACACACTTTCCCTCCTTGTCTCTCCCCTTCTCTCTCCTTTGTCGGTATCCC-CAGAAA 1025
Query 1061 GTTGATAGGGTTCCCATTCTTTGAATCACAAGCTAAATGGATTGCA-AAGCTTTTGTCAG 1119
||||||||| ||||||||||||||| ||||||| |||||||| || ||| |||||||||
Sbjct 1026 GTTGATAGGATTCCCATTCTTTGAAGCACAAGCAAAATGGATAGCTCAAG-TTTTGTCAG 1084
Query 1120 GCAAAA-C-TTCACTTCCTTCCTCTGATCAAATGATGCAATCAATCT-CTGA-TTTCTAT 1175
| ||| | || || ||||| ||||| |||||| | ||||| | | |||| ||| ||
Sbjct 1085 G-AAAGTCATTT-CTACCTTCTTCTGACCAAATGTTACAATCCGT-TGCTGAATTT-TA- 1139
Query 1176 CTCGC-CA-GAGAAGCT-GAC-GGAATCCCTAAACGTAACACTCACGACATCGCCGATTT 1231
| || || |||| || | | ||| ||||||||| |||||||||||||| || |||||
Sbjct 1140 C-CGGTCAAGAGAT-CTCG-CTGGAGTCCCTAAACACAACACTCACGACATTGCTGATTT 1196
Query 1232 CAATTATAGCGATAAATACGCGGATTACATCGGATTTCCACATCTGGAGGAATGGAGAAA 1291
|| ||| |||||||||| |||||||| | || ||||| ||| |||| |||||||||||
Sbjct 1197 CACGTATTGCGATAAATATGCGGATTATGTTGGGTTTCCGCATTTGGAAGAATGGAGAAA 1256
Query 1292 GGT-CTTGTGTTTATCGGCTAT-ATTGAATTC-CATCGAAAATCTAGAGACTTATCGTGA 1348
| | || ||||| || ||| | | | ||||| || |||||||| ||||||||||||||
Sbjct 1257 GCTACTA-TGTTTGTCTGCTCTCAAT-AATTCACAG-GAAAATCTTGAGACTTATCGTGA 1313
Query 1349 CTCTTGGGACGATGATGATCTTCTTCAAGAAACTCTTCAA 1388
|||||||| ||| |||| || || |||||| ||||||||
Sbjct 1314 TTCTTGGGATGATCATGAACTCCTACAAGAAGCTCTTCAA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5