BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61300.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496286 jgi|Araly1|496286|fgenesh2_kg.8__2102__AT5G61300.1 1168 0.0
> Ahg496286 jgi|Araly1|496286|fgenesh2_kg.8__2102__AT5G61300.1
Length=1839
Score = 1168 bits (632), Expect = 0.0
Identities = 949/1092 (87%), Gaps = 62/1092 (6%)
Strand=Plus/Plus
Query 756 TATAGAATCTGAGCAACCCCGAGAGCTTGTTTCAGCTTCATTGCACGGAAAACACGGATC 815
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 714 TATAGAATCTGAGCAACCCCGAGAGTTTGTTTCAGCTTCATTGCACGGAAAACGCGGATC 773
Query 816 AGAACCGTCAAGATCGTTAGTTCTAGCGCTCCCATGTT-TGGAAACCATTTCACTCTTCC 874
|||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 774 AGAACCATCACGATCGATAGTTCTAGCGCTCCCATGTTCT-GAAACCATTTCACTCTTCC 832
Query 875 ACACACGTTGCTCACAGCCAAGGAAGAAAGCTAAACGTGGAGC-AAA---AT--ATGTTa 928
||| || |||||||| ||| ||||||||||||||| |||||| ||| || ||||||
Sbjct 833 ACAAACATTGCTCACGGCCTAGGAAGAAAGCTAAATATGGAGCAAAATTCATCAATGTTA 892
Query 929 aaaaaaaTCCTCGCACCAAATCCCGGAAAGGCTCAAATCTTGACTCGAAC-TTCG-G-T- 984
|||| | |||||||| ||||||||||||||||||||||||||| |||||| || | | |
Sbjct 893 AAAATATTCCTCGCAGCAAATCCCGGAAAGGCTCAAATCTTGAATCGAACGTTGGAGTTA 952
Query 985 GT-----T---AA----TGA---AG-A-TGCCTCATACATCCCTGAATCTGCCCATAATC 1027
|| | || | | || | ||||||||||||||||||||||| ||||||||
Sbjct 953 GTGAAGATGACAACCGTTCACTGAGTACTGCCTCATACATCCCTGAATCTGACCATAATC 1012
Query 1028 TGGAGGAAGTTA-GTTCAAGTTCACAGCCTGAGTTTAAGAGAAAATGTTGTAAACCACA- 1085
||||| ||| | ||| ||| || | ||||||| ||||| ||| | |||||||||||||
Sbjct 1013 TGGAGAAAGGGAGGTT-AAGGTCTCTGCCTGAGATTAAGGGAAGACGTTGTAAACCACAC 1071
Query 1086 AGTAGAACCAGACAAGGTTATGAGAAAGAGTTCAAGAACTAAATCAAAGGCCAGAGGGAG 1145
| ||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 1072 A-TAGAACCAGGCAAAGTTACGAGAAAGATTTCAAGAACCAAATCAAAGGCCAGAGGGAG 1130
Query 1146 CTTTCTTGTTAGAGAGGAAGAGGAACAAGAAAAATCTGTAGCAGCAGCAGACGCTATAGT 1205
||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||||
Sbjct 1131 CTTTCTTGTTACAGAGGAAGAGGAACAAGAAAACTGTGTAGCAGCAGCAGAGGCTTTAGT 1190
Query 1206 TGATATGTCATTATCAGATTCAGCTAGAAAGTCAAGCATCAAAACCTCTGATTGTATCAC 1265
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1191 TGATATGTCATTATCAGATTCAGCTAGAAAATCAAGCATCAAAACCTCTGATTGTATCAA 1250
Query 1266 TCCTCTGCATTGGTTTGCTAGAATCGCATCTTCGGTTGTTGAGGACTCAAAGAGTGAAGT 1325
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1251 TCCTCTGCATTGGTTTGCCATAATCGCATCTTCGGTTGTTGAAGACTCAAAGAGTGAAGT 1310
Query 1326 TGGATTATC-AGTGCCCGGATTCAACTCTAGTAAC-AA-T-GACTATCCCGAGGCAATGA 1381
||||||||| | || |||| ||| |||||| | || || | |||||| ||||||||||
Sbjct 1311 TGGATTATCCA-TGGCCGGGTTCCACTCTAATTACGAAATAGACTATTTTGAGGCAATGA 1369
Query 1382 CACTGCAGCTAACAGAGATGAAGTCAGAGGAGCAAAGAACAAACACTCCAGTCTATAACT 1441
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
Sbjct 1370 CATTGCAGCTAACAGAGATGAAGCCAGAGGAGCAAAGAACAAACACTTCAGTCTCTAA-T 1428
Query 1442 -TTG-CTACTCCTAAACACAAGAGGACCCTGCACAGTCGAGGAAAGCGTCAACAACACAA 1499
||| | | ||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1429 ATTGGCCA-TCCTAAACACAAGAGAACCCTGCGCAGTCGAGGAAAGCGACAACAACACAA 1487
Query 1500 CGAGTTTCTCCCGAGCCTAAGCACTTTTAACGGAAACAAAGCCTCTAAGGTTCTACAGAA 1559
||||||||||| ||||||||||||||||| ||||||| |||||||| || | |||||||
Sbjct 1488 CGAGTTTCTCCTGAGCCTAAGCACTTTTACCGGAAACGAAGCCTCTCGGGATGTACAGAA 1547
Query 1560 GATAGAAAGGCCAAGTGAAGCTACTGAGACGAATGATGCTCACTCAAGCT--AT--A--- 1612
||||| ||||| || |||||||||||| | |||||||||||||||||||| || |
Sbjct 1548 GATAGGAAGGCTAATTGAAGCTACTGAAAGGAATGATGCTCACTCAAGCTTGATGGAAAA 1607
Query 1613 T--GGTAATCGATTGGGGAACCGTAACAAAACGAAGAAGAGGCATCAGAAGTCCTGCCTG 1670
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1608 TATGGTAATCGATTGGGGAACCGTAACAAAACGAAGAAGAGGCATCAGAAGTCCTGC-TG 1666
Query 1671 CTAATACCAAAGCTTACATACCTTTTTTGCTTTCAGATTCTTGAAGAATCAAAGTCTAGT 1730
|||||||||| ||| ||| |||||| ||||||||||||||||||||||||| |||| ||
Sbjct 1667 TTAATACCAAAACTTCCATGCCTTTTCTGCTTTCAGATTCTTGAAGAATCAACGTCTCGT 1726
Query 1731 TACA------GTAATCACACCACATAGGAGATATATACT-AAAACAGTGAAACTTTTGGG 1783
|||| ||||||||||||||||||||||||||||| |||| | ||||| |||||
Sbjct 1727 TACACTTACAGTAATCACACCACATAGGAGATATATACTGAAAA-A-TGAAAGTTTTGTT 1784
Query 1784 TTTTT-GCTTTT 1794
||||| ||||||
Sbjct 1785 TTTTTTGCTTTT 1796
Score = 414 bits (224), Expect = 1e-114
Identities = 309/348 (89%), Gaps = 13/348 (4%)
Strand=Plus/Plus
Query 331 TCTGCCAAGATTGATGAAGCTGGTATTTCTGGAAATGAGATTGGTAAGTCTGGAGAGAAG 390
||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||
Sbjct 316 TCTGCCAAGATTGATGAAGCTGGAATCTCTGGAGATGAGATTGATAAGTCTGGAGAGGTC 375
Query 391 GTCTTGGATTTTGAATTACCATCTTACGGGTATCGTGATATATGGGAAGAAGAAGGTTCA 450
||||||||| |||||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct 376 GTCTTGGATCTTGAATTACCGTCTTAC--G----GTGATATATGGGAAGAAGAAGCTTCA 429
Query 451 AAGAATGGAGAATTCCTTGAAGTTCCGTACTTTCCTAAAGATCAATCTACAAGAAGCAGG 510
|||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 430 AAGAATGGGGAAGTCCTTGAAGTTCCCAACTTTCCTAAAGATCAATCTCCAAGAAGCATG 489
Query 511 TCTCTCGAATCAGTTCTCCAGCCGGAAAGTGTGCAGGATTTACCT-GATTTGTCAAGTTT 569
||||||||||||||| |||||||| ||||||||| |||||| | || ||||||| |||
Sbjct 490 TCTCTCGAATCAGTTGTCCAGCCGAAAAGTGTGC---ATTTACTTGGA-TTGTCAAATTT 545
Query 570 CAAATGTATACTCGATTTAAATGAACCTTCCAGTATCGAGGAACATTCAGATTATGAGCT 629
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 546 CAAATGTATACTCGACTTAAATGAACCTGCCAGGATCGAGGCACATTCAGATTATGAGCT 605
Query 630 TAATCAGTTCCCTACT-CCAGCCCAAACAAGGAGTGAAAGAGCAGAAC 676
||||||||||| || | |||||| ||||||||||||||||||||||||
Sbjct 606 TAATCAGTTCC-TAATTCCAGCCAAAACAAGGAGTGAAAGAGCAGAAC 652
Score = 357 bits (193), Expect = 2e-97
Identities = 278/315 (88%), Gaps = 21/315 (7%)
Strand=Plus/Plus
Query 1 ATGGAAATGCAAGAGGATAGCTTGTGGAGTTTGTATCCTGTACACGATATTGATACGGCC 60
||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||| |
Sbjct 1 ATGGAAATGCAAGAGGATAGCTTGTGGCGTCTGTATCCTGTACATGATATGGATACGGTC 60
Query 61 TTAACGAATAGATTAGTCTACTGTGATCTTTATTTGAGACAGTACAAGGAAACATTGAAA 120
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAACCAATAGATTACTATACTGTGATCTTTATTTGAGACAGTACAAGGAAACATTGAAA 120
Query 121 CAGACCATGCTTGGCCAAGAATCTGTCTTTGAAACTCAGATCTACGAGCTTCATCGTCTG 180
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 121 CAGACCATGCTTGGCCAAGAATCTATCTTTGAAAATCAGATCTACGAGCTTCATCGTCTG 180
Query 181 TATCAAAGGCAGAAGGATCTGATGATGGACATGGAGGAAAC-------T----CA---A- 225
|||||||||||||||||||||||||| || ||||||||||| | || |
Sbjct 181 TATCAAAGGCAGAAGGATCTGATGATTGAAATGGAGGAAACCAACAACTTGTACACTCAA 240
Query 226 C---A---TTTATTCCCAAATGCCGGGGTCTCTAGTCCTAGAAGAAGTAGACACTGGATG 279
| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 241 CCTCAACATTTATTCCCAAATGCCGGGGTCTCTAGTCCTAGAAGAAGCATACACTGGATG 300
Query 280 GGTTCAAGCATCTCT 294
|||| ||||||||||
Sbjct 301 GGTTTAAGCATCTCT 315
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 692 AATGTCAAGCTGAGAATGGAATTGACTTGAATAT 725
||||||||||||||||||||||||||||||||||
Sbjct 683 AATGTCAAGCTGAGAATGGAATTGACTTGAATAT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5