BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61310.1
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496289 jgi|Araly1|496289|fgenesh2_kg.8__2105__AT5G61310.3 298 2e-80
> Ahg496289 jgi|Araly1|496289|fgenesh2_kg.8__2105__AT5G61310.3
Length=338
Score = 298 bits (161), Expect = 2e-80
Identities = 227/257 (88%), Gaps = 11/257 (4%)
Strand=Plus/Plus
Query 32 TTCTTCGTATTGGAACATACAA-TTATA-CAA-TTGGTGTGA--GCAG-G-AGAGTGGCA 84
|||||||||||||||||| ||| ||| | ||| || || || ||| | | |||| ||
Sbjct 1 TTCTTCGTATTGGAACATTCAATTTA-ACCAATTTCTTG-GATTCCAGTGTAAAGTGACA 58
Query 85 AAGAGATGGCTGGGCACAAGATAGCACACGCAACTTTAAAAGGCCCAAGTGTTGTGAAGG 144
|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 59 AAGAAATGGCTGGGCACAAGATCGCACGCGCAACTTTAAAAGGCCCAAGTGTTGTGAAGG 118
Query 145 AGTTAGTTATTGGTCTCACACT-GGGACTAGCGGCTGGTGGGCTATGGAAGATGCATCAC 203
||||||||||||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct 119 AGTTAGTTATTGGCCTCGCACTCGGG-CTAGCGGCTGGTGGACTATGGAAGATGCACCAC 177
Query 204 TGGAACGAGCAGAGGAAAACAAGAGTCTTCTATGATTTGCTTGAGAGAGGCGAGATTGGT 263
||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 178 TGGAACGAGCAGAGGAAAACAAGAGCCTTTTATGAGTTGCTTGAGAGAGGCGAGATTGGC 237
Query 264 GTTGTTGTTACCGAGGA 280
||||||||| | |||||
Sbjct 238 GTTGTTGTTGCAGAGGA 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14537279409
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5