BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61320.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496290 jgi|Araly1|496290|fgenesh2_kg.8__2106__AT5G61320.1 1424 0.0
Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1 483 2e-135
Ahg925338 jgi|Araly1|925338|scaffold_200899.1 243 4e-63
> Ahg496290 jgi|Araly1|496290|fgenesh2_kg.8__2106__AT5G61320.1
Length=1392
Score = 1424 bits (771), Expect = 0.0
Identities = 951/1035 (92%), Gaps = 23/1035 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACATGGTTTC-ACATCTTCTGCGTCTCTTTCACAGTCAACTTCCTTCTATATCT 59
|||||||||||||||| | ||| ||| | ||||| ||||| | | ||||| | | ||
Sbjct 1 ATGGCGACATGGTTTCTA-ATCATCTTCCTCTCTCTCACACTTGCCCTCCTTATCCACCT 59
Query 60 CTTCTTCCGCAGAACTAACAACAATCTTCCTCTACCTCCGAACCCTAACTTCTTCCCCAT 119
|||| ||||| | | | |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 60 CTTCCTCCGCCG--C-ACCAACTCTCTTCCTCTACCTCCTAACCCTAACTTCTTCCCCAT 116
Query 120 GCC-TGGTCCCTTCCAGTGGCTCCGTCAAGGCTTCGATGATTTCTACTCCTATCTCCGCT 178
|| ||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 117 -CCTTGGTCCCTTCCAGTGGCTCCGTCAAGGCTTCGATGGTTTTTACTCCTACCTCCGCT 175
Query 179 CCATCCACCACCGTCTCGGCCCAATCATCTCTCTCCGCATCTTTTCCGTCCCTGCCATCT 238
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 CCATCCACCACCGTCTCGGCCCAATCATCTCCCTCCGCATCTTTTCCGTCCCTGCCATCT 235
Query 239 TCGTCTCTGATCGTTCCTTGGCTCACAAGGCTCTTGTTTTAAACGGCGCCGTATTCTCTG 298
|||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 236 TCGTTTCTGATCGTTCCTTGGCTCACAAGGCACTCGTTTTAAACGGCGCCGTTTTCTCCG 295
Query 299 ATCGTCCACCGGCGCTTCCTACCGGAAAGATCATCACTAGTAACCAACACACCATCAGCT 358
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 296 ATCGTCCACCGGCGCTTCCAACCGGAAAGATCATCACTAGTAACCAACACACTATCAGCT 355
Query 359 CAGGAT-CATACGGAGCTACGTGGCGACTTCTCCGTCGTAATCTCACCTCCGAGATTCTT 417
|||| | |||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 356 CAGG-TACATACGGAGCCACGTGGCGACTTCTCCGTCGAAATCTCACTTCCGAGATTCTT 414
Query 418 CATCCATCCCGTGTCAAATCTTATTCCAACGCTCGTCGCTCTGTTCTTGAAAACCTCTGT 477
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CATCCATCTCGCGTCAAATCTTATTCCAACGCTCGTCGCTCTGTTCTTGAAAACCTCTGT 474
Query 478 TCTCGAATTCGTAATCACGG-G--GAAGAAGCAAAACCGATCGTCGTCGTTGATCATCTC 534
|||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 475 TCTCGAATTCGTAATCACGGCGATGAAGAAGGAAAACCGATCGTCGTCGTTGATCATCTC 534
Query 535 CGTTATGCAATGTTCTCGCTTCTTGTTCTCATGTGTTTCGGAGATAAGCTTGACGAAGAA 594
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 CGCCACGCAATGTTCTCGCTTCTTGTTCTCATGTGTTTCGGAGATAAGCTTGATGAAGAA 594
Query 595 CAGATCAAACAAGTCGAATTCGTTCAAAGAAGAGAGCTCATCACGTTACCAAGATTCAAC 654
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 CAGATCAAACAAGTCGAATTCGTTCAAAGAAGAGAGCTCCTCACGTTACCAAGATTCAAC 654
Query 655 ATCCTCAATGTCTTCCCTAGTTTCACCAAGTTGTTTCTGAGAAAGAGATGGGAAGAGTTT 714
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 655 ATCCTCAATGTCTTCCCTAGTTTCACCAAACTGTTTCTAAGAAAGAGATGGGAAGAGTTT 714
Query 715 CTTACGTTCAGGAGAGAACACAAGAACGTCTTGCTTCCGTTGATTCGTTCCCGGAGAAAG 774
|||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 CTTATGTTCCGTAGAGAACACAAGAACGTCTTGCTTCCGTTGATTCGATCCCGGAGAAAG 774
Query 775 ATCAT-GATCGAATCTAAAGATTCCGGTAAAGAATACATACAATCGTATGTAGATACTCT 833
|| || || |||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 775 ATTATCGAA-GAATCTAAAGATTCCGATAAAGAATACGTACAATCGTATGTAGATACTCT 833
Query 834 GCTCGATCTTGAGCTTCCTGATGAGAAGAGGAAACTAAACGAAGACGAGATCGTGAGTTT 893
||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 834 GCTTGATCTTAAGCTTCCTGAAGAGAAGAGGAAACTAAACGAAGACGAAATCGTGAGCTT 893
Query 894 ATGCTCTGAGTTTCTCAACGCCGGGACTGATACAACAGCGACGACACTTCAATGGATAAT 953
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 894 ATGCTCTGAGTTTCTCAACGCCGGGACTGATACAACAGCGACGACGCTACAATGGATCAT 953
Query 954 GGCGAATCTT-------G--TAATCGGTgaagaagaagagaaggagattgaagaagaaga 1004
|||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 954 GGCGAATCTTATCAAAAGCATAATCGGAGAAGAAGAAGAGAAGGAGATTGAAGAAGAAGA 1013
Query 1005 gatgaagaagaTGCC 1019
|||||||||||||||
Sbjct 1014 GATGAAGAAGATGCC 1028
Score = 558 bits (302), Expect = 3e-158
Identities = 341/360 (95%), Gaps = 2/360 (1%)
Strand=Plus/Plus
Query 1136 GGACGTTTAATATCAATGTGGCGATGATAGGGAGAGATCCAACAGTGTGGGAGGAGCCAA 1195
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1034 GGACGTTTAATATCAATGTGGCGATGATAGGGAGAGATCCAACGGTGTGGGAGGAGCCAA 1093
Query 1196 TGGAGTTTAAGCCGGAGAGATTCATCGGAGAAGATA-AAGAAGTTGATGTTACTGGAAGT 1254
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 1094 TGGAGTTTAAGCCGGAGAGATTCATCGGAGAAGA-AGAAGAAGTGGATGTTACTGGAAGT 1152
Query 1255 AGAGGGATAAAGATGATGCCGTTTGGAGCAGGAAGGAGGATCTGTCCAGGGATTGGATCG 1314
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
Sbjct 1153 AGAGGGATAAAGATGATGCCGTTCGGAGCAGGAAGGAGGATTTGTCCAGGGATAGGATTG 1212
Query 1315 GCCATGTTGCATTTGGAGTATTTTGTGGTGAATTTGGTTAAAGAGTTTGAGTGGAAAGAA 1374
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1213 GCTATGTTGCATTTGGAGTATTTTGTGGTGAATTTGGTGAAAGAGTTTGAATGGAAAGAA 1272
Query 1375 GTTGAAGGTTATGAAGTTGACTTGTCTGAGAAATGGGAGTTCACTGTTGTTATGAAGTAT 1434
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1273 GTTGAAGGTGATGAAGTTGACTTGTCTGAGAAATGGGAGTTCACTGTTGTCATGAAGTAT 1332
Query 1435 CCTCTTAAAGCTCTTGCTGTGACAAGAAGGAAGGAGAAGACACATATCGTCATGGCTTAG 1494
|||||||| |||| ||||||| |||||| |||||| ||||||||||| ||||||||||||
Sbjct 1333 CCTCTTAAGGCTCGTGCTGTGCCAAGAATGAAGGATAAGACACATATTGTCATGGCTTAG 1392
> Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1
Length=1542
Score = 483 bits (261), Expect = 2e-135
Identities = 719/929 (77%), Gaps = 76/929 (8%)
Strand=Plus/Plus
Query 84 TCTTCC-TCTACCTCC-GAACCCTAACTTCTTCCCCATGCC-TGG-TCCCTTCCAGTGGC 139
|||||| | ||||||| | ||||||||||||| ||| | || ||| ||| |||| ||||
Sbjct 90 TCTTCCGT-TACCTCCTG-ACCCTAACTTCTT-CCCTTTCCTTGGAACCC-TCCAATGGC 145
Query 140 TCCGTCAAGGCTTCGATGATTTCTACTCCTATCTCCGCTCCATCCACCACCGTCTCGG-C 198
|||| ||||| || | || | || || |||||||||| || |||||||||||||||| |
Sbjct 146 TCCGGCAAGGTTTAGGTGGTCTCAACAACTATCTCCGCACCGTCCACCACCGTCTCGGTC 205
Query 199 CCAATCATCTCTCTCCGCATC-TTTTCCGTCCCTGCCATCTTCGTCTCTGATCGTT-CCT 256
|| |||||| | ||||| ||| || ||| ||| || |||||||| | ||||||| |||
Sbjct 206 CC-ATCATCACCCTCCGTATCACTTCCCG-CCCCGCAATCTTCGTGGCCGATCGTTCCCT 263
Query 257 TGGCTCA-CAAGGCTCTTGTTTTAAACGGCGCCGTATTCTCTGATCGTCCACCGGC-GCT 314
| ||| | | ||||||| || || ||||| ||||| ||| | |||||||||||||| ||
Sbjct 264 T-GCTTATC-AGGCTCTAGTCTTGAACGGTGCCGTTTTCGCCGATCGTCCACCGGCGGC- 320
Query 315 TCCTACCGGAAAGATCATCACTAGTAACCAACACACCATCAGCTCAGGATCATACGGAGC 374
||| | | | ||||| | | ||||||||||| | ||||||||| ||||||||||||
Sbjct 321 TCCGATCAGTAAGATTGTTTCGAGTAACCAACATAACATCAGCTCTTCATCATACGGAGC 380
Query 375 TACGTGGCGACTTCTCCGTCGTAATCTCACCTCCGAGATTCTTCATCCATCCCGTGTCAA 434
||||||||| ||||| || || |||||||| || ||||||||||| || || || || ||
Sbjct 381 TACGTGGCGGCTTCTTCGCCGGAATCTCACTTCTGAGATTCTTCACCCGTCACGGGTGAA 440
Query 435 ATCTTATTC-CAACGCTCGTCGCTCTGTTCTT-GAAAACCTCTGTT-CTCGAATTCGTAA 491
||||||||| | |||| || | | |||||| | | | |||| || ||| |||||||
Sbjct 441 ATCTTATTCTC-ACGCGCGGGGTTGGGTTCTTGGGATA-CTCT-TTGATCGTTTTCGTAA 497
Query 492 TCACGG-GGAAGAAGCAAAACCGATCGTCGTCGTTGATCATCTCCGTTATGCAATGTTCT 550
|||| || |||| ||||||| || || ||||||||||| | ||||||||||| |
Sbjct 498 GAACGGCGG-TGAAG---AACCGATTGTTGTGGTTGATCATCTTCACTATGCAATGTT-T 552
Query 551 -CGCTTCTTGTTCTCATGTGTTTCGGAGATAAGCTTGACGAAGAA-CAGATCAAACAAGT 608
|||||||||||||||||||||| |||||||||||||| | |||| || |||||||| ||
Sbjct 553 GCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGATG-AGAAGCAAATCAAACAGGT 611
Query 609 CG-AAT-TCGTTCAAAGAAGAGAGC-TCATCACGTTACCAAGATTCAACATCCTCAATGT 665
| ||| | ||||| ||| || ||| || || | || || ||||| |||||||||||| |
Sbjct 612 -GCAATAT-GTTCAGAGACGACAGCTTCTTCGCTTTTCC-AGATTTAACATCCTCAATCT 668
Query 666 CTT-CCCT-AGTTTCACCAAGTTG-TTTCTGAGAAAGAGATGGGAAGAGTTTCTTAC-G- 720
|| ||| ||||| || || ||| ||| || |||||||||||||||||||| || | |
Sbjct 669 -TTGGCCTAAGTTT-ACTAAATTGATTT-TGCGAAAGAGATGGGAAGAGTTT-TTCCAGA 724
Query 721 TTCAGGAGAGAACA-CAAGAACGTCTTGCTTCCGTTGATTCGTTCCCGGAGAAAGA---T 776
| | ||||||| || || | | || ||||||||| |||||||| | |||||||||| |
Sbjct 725 TGC-GGAGAGAGCAGCATG-ATGTTTTGCTTCCGCTGATTCGTGCTCGGAGAAAGATTGT 782
Query 777 C---------ATG-ATCGA--ATCTAAAGATTCCG--GT----AAAGAATACATACAATC 818
| | | || || ||| | || | | || ||||| || |||||||
Sbjct 783 CGAAGAGAGGAAGAATAGATCATCGGAGGAGGCAGAAGTCAACAAAGAGTATGTACAATC 842
Query 819 GTATGTAGATACTCTGCTCGATCTTGAGCTTCCTGATGAGAAGAGGAAACTAAACGAAGA 878
|| || |||||| |||||||||| |||||||| |||||||||||||| || | ||| ||
Sbjct 843 ATACGTTGATACTTTGCTCGATCTGGAGCTTCCAGATGAGAAGAGGAAGCTGACCGAGGA 902
Query 879 CGAGATCGTGAGTTTATGCTCTGAGTTTCTCAACGCCGGGACTGATACAACAGCGAC-GA 937
||||| |||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 903 TGAGATTGTGAGTTTATGCTCTGAGTTTCTCAACGGTGGGACTGATACAACGGCCACCG- 961
Query 938 CACTT-CAATGGATAATGGCGAATCTTGT 965
| || |||||||| |||||||| |||||
Sbjct 962 CG-TTGCAATGGATCATGGCGAACCTTGT 989
> Ahg925338 jgi|Araly1|925338|scaffold_200899.1
Length=1564
Score = 243 bits (131), Expect = 4e-63
Identities = 377/493 (76%), Gaps = 28/493 (6%)
Strand=Plus/Plus
Query 976 gaagaag-agaaggagattgaagaagaaga-gatgaagaagaTGCCGTATCTTAAA-GCT 1032
||||||| | |||||| | || |||||||| | || |||| |||||||||| |||| |||
Sbjct 1044 GAAGAAGCA-AAGGAGGTGGAGGAAGAAGATG-TGGAGAACATGCCGTATC-TAAAGGCT 1100
Query 1033 GTCGTGTTAGAAGGTCTCCGGTTACATCCACCGGGACA-TTTGTTGTTACCACACAGAGT 1091
|| ||||| || || || ||| ||| || || ||||| ||| ||| | || || || ||
Sbjct 1101 GTGGTGTTGGAGGGACTACGGCGACACCCTCCCGGACACTTT-TTGCTCCCGCATAGTGT 1159
Query 1092 -AAGTGAAGACACTG-AGCTAGGAGGATAC-AGAGTTCCAAAGAAAGGGACGTTTAA-TA 1147
| | || || |||| | | ||||| ||| || || || ||||| |||||| | || |
Sbjct 1160 CACG-GAGGATACTGTA-TTGGGAGGGTACAAG-GTACCGAAGAATGGGACGATCAACT- 1215
Query 1148 TCAAT-GTGGC-GATGATAGGGAGAGATCCAACAGTGTGGGAGGAGCCAATGGAGTTTAA 1205
|| || || || || |||||||| |||||| | | |||||| || ||||||| ||||||
Sbjct 1216 TC-ATGGTTGCAGA-AATAGGGAGGGATCCAGCGGAGTGGGAAGAACCAATGGCGTTTAA 1273
Query 1206 GCCGGAGAGATTCATCGGAGAAGATAAAGAAGTTGATGTTACTGGAAGTAGAGGGATAAA 1265
||| ||||| || || |||||||| ||| || || | || |||||||||||||||||
Sbjct 1274 GCCAGAGAGGTTTATGGGAGAAGACGAAGCGGTGGACCTAACCGGAAGTAGAGGGATAAA 1333
Query 1266 GATGATGCCGTTTGGAGCAGGAAGGAGGATCTGTCCAGGG-ATTGGA-TCGGC-CATGTT 1322
|||||||||||| ||||||||||||||||| ||||| ||| || || | | | | ||||
Sbjct 1334 GATGATGCCGTTCGGAGCAGGAAGGAGGATATGTCC-GGGTATAGGGCTAG-CTC-TGTT 1390
Query 1323 GCATTTGGAGTATTTTGTGGTGAATTTGGTTAAAGAGTTTGAGTGGAAAGAAGTTGAAGG 1382
|||| | ||||| | | | ||| |||| | |||||| | |||||||| || |||||
Sbjct 1391 GCATCTCGAGTACTACATTGCCAATATGGTCAGAGAGTTCCAATGGAAAGAGGTCGAAGG 1450
Query 1383 TTATGAAGTTGACTTGTCTGAGAAA-TGGGAGTTCACTGTTGTTATGAAGTATCCTCTTA 1441
||| |||||||||||| | ||||| | | |||| || || || |||||| |||| ||||
Sbjct 1451 TTACGAAGTTGACTTGACGGAGAAGCTTG-AGTTTACCGTCGTCATGAAGCATCCGCTTA 1509
Query 1442 AAGCTCTTGCTGT 1454
| ||| |||||||
Sbjct 1510 AGGCTTTTGCTGT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5