BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61330.1 Length=1584 Score E Sequences producing significant alignments: (Bits) Value Ahg358337 jgi|Araly1|358337|fgenesh1_pg.C_scaffold_8002124 1712 0.0 Ahg311229 jgi|Araly1|311229|fgenesh1_pm.C_scaffold_1000009 462 3e-129 > Ahg358337 jgi|Araly1|358337|fgenesh1_pg.C_scaffold_8002124 Length=1248 Score = 1712 bits (927), Expect = 0.0 Identities = 1071/1137 (94%), Gaps = 24/1137 (2%) Strand=Plus/Plus Query 312 gatgaaggagataccga-ggaagatgatgaaggagatAGCGAGGAAGATGATGAAGGAGA 370 ||||||| ||||| | | |||||||||||| ||||| || |||||||||||||||||||| Sbjct 133 GATGAAGTAGATAGC-ATGGAAGATGATGAGGGAGAGAGTGAGGAAGATGATGAAGGAGA 191 Query 371 GAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGGAAATGATAAAGAGAG 430 |||||||||||||||||||||||||||||||||||||||||||| ||| | || Sbjct 192 TAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGG-AAT--T-----GA- 242 Query 431 TGAGAGTGGCGATGAAGGTAATGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAA 490 | | | | ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 243 T-A-A------A-GAAGGTAGTGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAA 293 Query 491 AGAGGT-CAAGGAGCTTCGTTCACAAGAGCAGGATATATTGAAGAACTTGAAGCGTGATA 549 ||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 294 AGA-GTACATGGAGCTTCGTTCACAAGAACAGGATATATTGAAGAACTTGAAGCGTGATA 352 Query 550 AGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAGA 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 353 AGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAAA 412 Query 610 TTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTACCACAGG 669 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 413 CTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTGCCACAGG 472 Query 670 AGCCTGTGAAATCGTTATTT-TGTTCAGAAGATGAGGATGTCTCAACAGCATATACAGAT 728 |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 473 AGCCTGTGAAATCG-TATTTCTGTTCGGAAGATGAGGATGTCTCAACAGCATATACAGAT 531 Query 729 CTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTT 788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 CTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTT 591 Query 789 GAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGAAGAATCCAATAAA 848 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 592 GAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGCAGAATCCAAGAAA 651 Query 849 TCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCT 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 TCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCT 711 Query 909 GTGTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCA 968 || |||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| Sbjct 712 GTCTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAGAACAGAAGTTACAACTGGTGCA 771 Query 969 GCTGCTATTAAAGGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCC 1028 || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 772 GCAGCTATTAAAGGAAAGCTCCACGCCTTTAACCAAAACGTTAGTGAACAGGTTGCCTCC 831 Query 1029 TACATGAGGGATCCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCT 1088 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 832 TACATGAGGGATCCAAGTAGAATGATTAAACAAATGCAACAATCAAGATCTACTGTTGCT 891 Query 1089 GTTTTTGGAACTGTCCCTCAGGAAGCCATGGAACCAAATCCAGAGGAAAAACAAGAAGAA 1148 ||||||||||||||||||||||| ||||| ||||||| | |||||||||||||| ||||| Sbjct 892 GTTTTTGGAACTGTCCCTCAGGAGGCCATAGAACCAATTTCAGAGGAAAAACAACAAGAA 951 Query 1149 GGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTC 1208 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 GGAGACCCTGAACTTATGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTT 1011 Query 1209 GAGACTATCGATCCAGCTTCCTCAGAGGCGGCTTTCTACGAGATGAAGAAGTTCCAGACG 1268 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1012 GAGACCATCGATCCAGCTTCCTCGGAGGCGGCTTTCTACGAGATGAAGAAGTTTCAGACG 1071 Query 1269 AAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAGAGCAGAAAGATCAGGTATAATGTT 1328 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1072 AAGAAGAGGAAAATTGTGGATCGACGTGCCTCCAAGAGCAGAAAGATCAGGTATAATGTT 1131 Query 1329 CATGAGAAGATTGTCAACTTTATGGCTCCACGACCAGCGAAGATTCCTCCAAACACGGCG 1388 |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 1132 CATGAGAAGATTGTCAACTTCATGGCTCCACGGCCAGCAAAGATACCTCCAAACACTGCG 1191 Query 1389 GATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCTTAA 1445 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1192 GATTTGCTCAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCGTAA 1248 Score = 327 bits (177), Expect = 1e-88 Identities = 209/224 (93%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 135 ATGGCTGGGGGGTCAAAGAGGTCTAAAAGAGCAAGAC-T--TGACAGTGAATCGGAAGAC 191 ||||||||||| ||||||| | ||||||||||||||| | ||||||||||||||||||| Sbjct 1 ATGGCTGGGGGATCAAAGAAGACTAAAAGAGCAAGACTTAATGACAGTGAATCGGAAGAC 60 Query 192 ATAAGCGACCAAGAAAACCTTAAGGCCGAAAGCGACAATGAAGATGATCAATTACCTGAT 251 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 61 ATAAGCGACCAAGAAAACCTTAAGGTCGAAAGCGACAATGAAGATGATGAATTACCTGAT 120 Query 252 GGGATAGAGGATGATGAAGTAGATAGCATGgaagatgatgagggagagagtgaggaagac 311 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGGATAGAGGATGATGAAGTAGATAGCATGGAAGATGATGAGGGAGAGAGTGAGGAAGAT 180 Query 312 gatgaaggagataccgaggaagatgatgaaggagatAGCGAGGA 355 ||||||||||||| | ||||||| || || ||||| |||||||| Sbjct 181 GATGAAGGAGATAACAAGGAAGACGAGGATGGAGAAAGCGAGGA 224 > Ahg311229 jgi|Araly1|311229|fgenesh1_pm.C_scaffold_1000009 Length=789 Score = 462 bits (250), Expect = 3e-129 Identities = 299/321 (93%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 1134 GAAAAACAAGAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTA 1193 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 GAAAAACAACAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTA 528 Query 1194 CTAAAGGAGTTTCTCGAGACTATCGATCCAGCTT--CCT--C----A-GAGGCGGCTTTC 1244 |||||||||||||| ||||| ||||||||||||| ||| | | | ||||||||| Sbjct 529 CTAAAGGAGTTTCTTGAGACCATCGATCCAGCTTCCCCTAGCGATAATCAAGCGGCTTTC 588 Query 1245 TACGAGATGAAGAAGTTCCAGACGAAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAG 1304 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| Sbjct 589 TACGAGATGAAGAAGTTTCAGACGAAGAAGAGGAAAATTGTGGATCGACGTGCCTCTAAG 648 Query 1305 AGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTTATGGCTCCACGACCA 1364 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 649 AGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTCATGGCTCCACGACCA 708 Query 1365 GCGAAGATTCCTCCAAACACGGCGGATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGA 1424 || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 709 GCAAAGATTCCTCCAAACACTGCGGATTTGCTCAAGAATCTCTTCGGTCTCAAGACCAGA 768 Query 1425 AACGTTCAGTCTGAAGCTTAA 1445 ||||||||||||||||| ||| Sbjct 769 AACGTTCAGTCTGAAGCGTAA 789 Score = 435 bits (235), Expect = 6e-121 Identities = 278/296 (94%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 529 TGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATC 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATC 61 Query 589 AGAAGGCTCTTTGGGATAAGATTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATC 648 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 62 AGAAGGCTCTTTGGGATAAAACTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATC 121 Query 649 GTTCAAACAGATTACCACAGGAGCCTGTGAAATCGTTATTTT-GTTCAGAAGATGAGGAT 707 |||| |||||||| |||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct 122 GTTCTAACAGATTGCCACAGGAGCCTGTGAAATCGT-ATTTTTGTTCGGAAGATGAGGAT 180 Query 708 GTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATT-CCCTCTT 766 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 GTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATTTCCCTCTT 240 Query 767 GGAGTTGCAAGAGGCTTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATG 822 |||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGAG---C-------TTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATG 286 Score = 307 bits (166), Expect = 1e-82 Identities = 174/178 (98%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 921 AAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCAGCTGCTATTAAA 980 ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| Sbjct 289 AAGGCTGTGGACAAATGGCAGAGAAGAACAGAAGTTACAACTGGTGCAGCTGCTATTAAA 348 Query 981 GGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGAT 1040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGAT 408 Query 1041 CCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAA 1098 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 409 CCAAGTAGAATGATTAAACAAATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAA 466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59344601710 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5