BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61330.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358337 jgi|Araly1|358337|fgenesh1_pg.C_scaffold_8002124 1712 0.0
Ahg311229 jgi|Araly1|311229|fgenesh1_pm.C_scaffold_1000009 462 3e-129
> Ahg358337 jgi|Araly1|358337|fgenesh1_pg.C_scaffold_8002124
Length=1248
Score = 1712 bits (927), Expect = 0.0
Identities = 1071/1137 (94%), Gaps = 24/1137 (2%)
Strand=Plus/Plus
Query 312 gatgaaggagataccga-ggaagatgatgaaggagatAGCGAGGAAGATGATGAAGGAGA 370
||||||| ||||| | | |||||||||||| ||||| || ||||||||||||||||||||
Sbjct 133 GATGAAGTAGATAGC-ATGGAAGATGATGAGGGAGAGAGTGAGGAAGATGATGAAGGAGA 191
Query 371 GAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGGAAATGATAAAGAGAG 430
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 192 TAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGG-AAT--T-----GA- 242
Query 431 TGAGAGTGGCGATGAAGGTAATGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAA 490
| | | | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 T-A-A------A-GAAGGTAGTGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAA 293
Query 491 AGAGGT-CAAGGAGCTTCGTTCACAAGAGCAGGATATATTGAAGAACTTGAAGCGTGATA 549
||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 294 AGA-GTACATGGAGCTTCGTTCACAAGAACAGGATATATTGAAGAACTTGAAGCGTGATA 352
Query 550 AGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAGA 609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 353 AGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAAA 412
Query 610 TTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTACCACAGG 669
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 413 CTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTGCCACAGG 472
Query 670 AGCCTGTGAAATCGTTATTT-TGTTCAGAAGATGAGGATGTCTCAACAGCATATACAGAT 728
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 473 AGCCTGTGAAATCG-TATTTCTGTTCGGAAGATGAGGATGTCTCAACAGCATATACAGAT 531
Query 729 CTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTT 591
Query 789 GAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGAAGAATCCAATAAA 848
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 592 GAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGCAGAATCCAAGAAA 651
Query 849 TCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCT 711
Query 909 GTGTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCA 968
|| |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 712 GTCTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAGAACAGAAGTTACAACTGGTGCA 771
Query 969 GCTGCTATTAAAGGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCC 1028
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 772 GCAGCTATTAAAGGAAAGCTCCACGCCTTTAACCAAAACGTTAGTGAACAGGTTGCCTCC 831
Query 1029 TACATGAGGGATCCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCT 1088
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 832 TACATGAGGGATCCAAGTAGAATGATTAAACAAATGCAACAATCAAGATCTACTGTTGCT 891
Query 1089 GTTTTTGGAACTGTCCCTCAGGAAGCCATGGAACCAAATCCAGAGGAAAAACAAGAAGAA 1148
||||||||||||||||||||||| ||||| ||||||| | |||||||||||||| |||||
Sbjct 892 GTTTTTGGAACTGTCCCTCAGGAGGCCATAGAACCAATTTCAGAGGAAAAACAACAAGAA 951
Query 1149 GGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTC 1208
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GGAGACCCTGAACTTATGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTT 1011
Query 1209 GAGACTATCGATCCAGCTTCCTCAGAGGCGGCTTTCTACGAGATGAAGAAGTTCCAGACG 1268
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1012 GAGACCATCGATCCAGCTTCCTCGGAGGCGGCTTTCTACGAGATGAAGAAGTTTCAGACG 1071
Query 1269 AAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAGAGCAGAAAGATCAGGTATAATGTT 1328
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1072 AAGAAGAGGAAAATTGTGGATCGACGTGCCTCCAAGAGCAGAAAGATCAGGTATAATGTT 1131
Query 1329 CATGAGAAGATTGTCAACTTTATGGCTCCACGACCAGCGAAGATTCCTCCAAACACGGCG 1388
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 1132 CATGAGAAGATTGTCAACTTCATGGCTCCACGGCCAGCAAAGATACCTCCAAACACTGCG 1191
Query 1389 GATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCTTAA 1445
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1192 GATTTGCTCAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCGTAA 1248
Score = 327 bits (177), Expect = 1e-88
Identities = 209/224 (93%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 135 ATGGCTGGGGGGTCAAAGAGGTCTAAAAGAGCAAGAC-T--TGACAGTGAATCGGAAGAC 191
||||||||||| ||||||| | ||||||||||||||| | |||||||||||||||||||
Sbjct 1 ATGGCTGGGGGATCAAAGAAGACTAAAAGAGCAAGACTTAATGACAGTGAATCGGAAGAC 60
Query 192 ATAAGCGACCAAGAAAACCTTAAGGCCGAAAGCGACAATGAAGATGATCAATTACCTGAT 251
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 61 ATAAGCGACCAAGAAAACCTTAAGGTCGAAAGCGACAATGAAGATGATGAATTACCTGAT 120
Query 252 GGGATAGAGGATGATGAAGTAGATAGCATGgaagatgatgagggagagagtgaggaagac 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGATAGAGGATGATGAAGTAGATAGCATGGAAGATGATGAGGGAGAGAGTGAGGAAGAT 180
Query 312 gatgaaggagataccgaggaagatgatgaaggagatAGCGAGGA 355
||||||||||||| | ||||||| || || ||||| ||||||||
Sbjct 181 GATGAAGGAGATAACAAGGAAGACGAGGATGGAGAAAGCGAGGA 224
> Ahg311229 jgi|Araly1|311229|fgenesh1_pm.C_scaffold_1000009
Length=789
Score = 462 bits (250), Expect = 3e-129
Identities = 299/321 (93%), Gaps = 9/321 (3%)
Strand=Plus/Plus
Query 1134 GAAAAACAAGAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTA 1193
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GAAAAACAACAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTA 528
Query 1194 CTAAAGGAGTTTCTCGAGACTATCGATCCAGCTT--CCT--C----A-GAGGCGGCTTTC 1244
|||||||||||||| ||||| ||||||||||||| ||| | | | |||||||||
Sbjct 529 CTAAAGGAGTTTCTTGAGACCATCGATCCAGCTTCCCCTAGCGATAATCAAGCGGCTTTC 588
Query 1245 TACGAGATGAAGAAGTTCCAGACGAAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAG 1304
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 589 TACGAGATGAAGAAGTTTCAGACGAAGAAGAGGAAAATTGTGGATCGACGTGCCTCTAAG 648
Query 1305 AGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTTATGGCTCCACGACCA 1364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 AGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTCATGGCTCCACGACCA 708
Query 1365 GCGAAGATTCCTCCAAACACGGCGGATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGA 1424
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 709 GCAAAGATTCCTCCAAACACTGCGGATTTGCTCAAGAATCTCTTCGGTCTCAAGACCAGA 768
Query 1425 AACGTTCAGTCTGAAGCTTAA 1445
||||||||||||||||| |||
Sbjct 769 AACGTTCAGTCTGAAGCGTAA 789
Score = 435 bits (235), Expect = 6e-121
Identities = 278/296 (94%), Gaps = 13/296 (4%)
Strand=Plus/Plus
Query 529 TGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATC 61
Query 589 AGAAGGCTCTTTGGGATAAGATTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATC 648
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 62 AGAAGGCTCTTTGGGATAAAACTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATC 121
Query 649 GTTCAAACAGATTACCACAGGAGCCTGTGAAATCGTTATTTT-GTTCAGAAGATGAGGAT 707
|||| |||||||| |||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 122 GTTCTAACAGATTGCCACAGGAGCCTGTGAAATCGT-ATTTTTGTTCGGAAGATGAGGAT 180
Query 708 GTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATT-CCCTCTT 766
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATTTCCCTCTT 240
Query 767 GGAGTTGCAAGAGGCTTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATG 822
|||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAG---C-------TTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATG 286
Score = 307 bits (166), Expect = 1e-82
Identities = 174/178 (98%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 921 AAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCAGCTGCTATTAAA 980
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 289 AAGGCTGTGGACAAATGGCAGAGAAGAACAGAAGTTACAACTGGTGCAGCTGCTATTAAA 348
Query 981 GGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGAT 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGAT 408
Query 1041 CCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAA 1098
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 409 CCAAGTAGAATGATTAAACAAATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAA 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5