BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61340.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950890 jgi|Araly1|950890|scaffold_802777.1 1600 0.0
> Ahg950890 jgi|Araly1|950890|scaffold_802777.1
Length=1020
Score = 1600 bits (866), Expect = 0.0
Identities = 973/1025 (95%), Gaps = 6/1025 (1%)
Strand=Plus/Plus
Query 53 AAGAAAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 112
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAG-AAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 59
Query 113 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCC 119
Query 173 ctccctttctccgccggtctcctcctctctcagcctttcttctcttcttcctcttccacc 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 120 CTCCCTTTCTCCGCCGGTCTCCTCCTCTCTCAGCCTTTCTTCTCTTCTTCCTCTTCTATC 179
Query 233 cttcACATGAGGCTTAACATGCTCTTCCGCGGAGCGGGTTTCTCTTCTTCTCATGACTTC 292
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 180 CTTCACATGAGGCTTAACATGCTCTTTCGCGGAGCGGGTTTCTCTTCTTCTCACAATTTC 239
Query 293 TTCAACATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 352
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCAATATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 299
Query 353 TTCTCCCTCACATTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 412
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTCCCTCACTTTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 359
Query 413 CACTCTGCAGATTCCTCCTCTGTTTTCTACCTCCGGCTTCTCAAAACTTACGTTTGCAAC 472
|||||||||||||| || | | |||| ||||||||||||||||||||||||||||| |||
Sbjct 360 CACTCTGCAGATTCATC-TGT-TTTT-TACCTCCGGCTTCTCAAAACTTACGTTTGTAAC 416
Query 473 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCTTAGCATACAAT 532
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCGTAGCATACAAT 476
Query 533 ACCCTTGAAGCCTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCCTATCCTCA 592
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 477 ACCCTTGAAGCTTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCGTATGCTCA 536
Query 593 GCAATCATCTACTCAATTATCATCGCAAACGCCTTTGTCATCTCTAATCTAGCCTTGGTT 652
| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 537 CCGATTATCTACTCGATTATCATCGCAAACGCCTTTGTCATCTCCAATCTAGCCTTGGTT 596
Query 653 TCATCACCTTCTTCTTCCTCGGGAGGATACACAAACATCCTCAAGGCGTGTCTTCTGATT 712
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct 597 TCATCACCTTCTTCTTCCTCAGGAGGATACACCAACATTCTCAAGGCGTGTCTTCTTATT 656
Query 713 CGCGGAAGAAATTCAACAGCAATGGCTCTTGCTCTGCCTACCAATCTCGGCTTAGCAGGA 772
| |||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||||
Sbjct 657 CACGGAAGAAGTTCAACAGCATTGGCTATTGCTCTTCCTACCAATCTTGGCTTAGCAGGA 716
Query 773 GTCGAAGCCTTGTTTCAGTACCGAGTCATGAGATCTTATTACAATGGAGACAGAGATATC 832
||||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||
Sbjct 717 GTCGAAGCCTTGTTTCAGTACAGGGTCTTGAGATCTTATTACAAAGGAGACAGAGATATC 776
Query 833 ATATCCATAGCTCTTGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 892
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACATCCATAGCTCTCGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 836
Query 893 GACACCATAGTCAACTTCCTCTTTTACCAGAGCTGCATCAAAAACGAGGAAGATCAAAAT 952
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 837 GACACGATAGTCAACTTCCTTTTTTACCAGAGCTGCATCAAGAACGAGGAAGATCAAAAG 896
Query 953 ATCGGTAGAGAAGACGAGTATTCAATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 1012
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 ATCGGTAGAGAAGACGAGTATTCGATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 956
Query 1013 ATACACATCAAAGGATCAAAGAACTTGCAAGAAATCTTGTGACTCTCTTG-TGTTGGTTG 1071
||||||||||| ||||||||||| || |||||||| |||||||| ||||| | |||||||
Sbjct 957 ATACACATCAATGGATCAAAGAATTTACAAGAAATATTGTGACTTTCTTGAT-TTGGTTG 1015
Query 1072 ATGTA 1076
|||||
Sbjct 1016 ATGTA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5