BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61360.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917886 jgi|Araly1|917886|Al_scaffold_0008_2637 809 0.0
> Ahg917886 jgi|Araly1|917886|Al_scaffold_0008_2637
Length=654
Score = 809 bits (438), Expect = 0.0
Identities = 572/634 (90%), Gaps = 20/634 (3%)
Strand=Plus/Plus
Query 50 GAAGAACAGAGGAGGATCACACACTTGGATCTGAGAAACGAGCCCCAGTTTCCAATGGTT 109
||||||| | ||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 28 GAAGAAC--A-GAGGATCACACACTTTGATCTGAGAAACGATCCCCAATTTCCAATGGTT 84
Query 110 TTCGTTAGAGAATCGACTTG-TTTCGCTAAGGACGATCTCGCTATCTTCCCGCCGATCAA 168
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 85 TTCGTTAGAGAATCGAC-TGATTTCGCTAAGGACGATCTCGCTATCTTCCCGCCGATCAA 143
Query 169 CCACGAGAA--TC-TC--T-AC-G--TC-A-ACGGA-CTCGAATCTCCGTCGGTATCATC 216
||||||||| || || | || | || | | ||| | |||| |||||||| ||| ||
Sbjct 144 CCACGAGAATCTCTTCATTAACGGATTCGATAAGGACCGAGAATATCCGTCGGAATCCTC 203
Query 217 CTCTTCTTCATCTTCCTCGTCGAGACTCTCAGATTCGTCCTTCTCTCCGTCCGATTCAGA 276
|||| ||||||| | |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 204 CTCTCCTTCATC-T--TCGTCGAGACTCTCAGATTCTTCCTTGTCTCCGTCCGATTCAGA 260
Query 277 CGAACAATTTCAATTTAGCCGGAAATCGCATTCTCAGCCATCGGAAGATGTCGGGAAATC 336
|||||||| ||| ||| |||||||||||||||||||||| || |||| ||||||||||||
Sbjct 261 CGAACAATATCAGTTTTGCCGGAAATCGCATTCTCAGCCGTCAGAAGCTGTCGGGAAATC 320
Query 337 TCCGTGGAAATCCGTAATTGAGATTGATATTATCCAAGGTTGGTGGAAGATTCTTCTCGC 396
|| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 321 TCGGTGGAAATCCATACTTGAGATTGATATTATCCAAGTTTGGTGGAAGATTCTTCTCGC 380
Query 397 TCGAGTAATGTCAAATTTCCAGAATTTGGTTACCTGCTTCTCCAGAAATAGTCTCTGTTC 456
|||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 381 TCGAGTAATGCCAAAGTTCCAGAATTTGGTGACTTGCTTCTCCAGAAATAGTCTCTGTTC 440
Query 457 CTTCTCAAAGACTCTCCGGTCATTTTATTCGGTTATGGTCATATTCCTTTGGTGGTGGAA 516
|||||| ||||||||||||||||||||| |||| ||||||||| | ||||||||||||
Sbjct 441 CTTCTCGAAGACTCTCCGGTCATTTTATCCGGTCATGGTCATAGTAATTTGGTGGTGGAT 500
Query 517 GCGTAACCGAACTCGCCGACGACTTGAAAAAGGTGAAATCATCGCTGCTCATCTCAGAGA 576
|||||||||||||||||| |||||| ||||||| ||||||||||| |||||| | |||||
Sbjct 501 GCGTAACCGAACTCGCCGGCGACTTCAAAAAGGAGAAATCATCGCAGCTCATTTTAGAGA 560
Query 577 TACAATCAAAGAGAGAGACGAGAGAATAGCTCAACTCTTGCATCAGATTACTCAGATGAA 636
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 561 TACTATCAAAGAGAGAGACGAGAGAATAGCTCAACTCTTGCATCAGATAACTCAGATGAA 620
Query 637 CGAGTTACTTGTAAAAATAACACATTCCAATTGA 670
||||||||||||||||||||||||||| ||||||
Sbjct 621 CGAGTTACTTGTAAAAATAACACATTCGAATTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5