BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61390.1
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496298 jgi|Araly1|496298|fgenesh2_kg.8__2114__AT5G61390.1 2519 0.0
> Ahg496298 jgi|Araly1|496298|fgenesh2_kg.8__2114__AT5G61390.1
Length=1665
Score = 2519 bits (1364), Expect = 0.0
Identities = 1577/1679 (94%), Gaps = 17/1679 (1%)
Strand=Plus/Plus
Query 16 TCATATAAATCTCTGCTCATTTTCGATAAAAAGTTGAATCC-TTTTCACATTTTCCGCTC 74
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCATATAAATCTCTGCTCAATTTCGATAAAAAGTTGAATCCTTTTTCACATTTTCCGCTC 60
Query 75 AATTCGATCTTACATGTTAACAATGGTTGGTCTAACTCCAGCTGAGGATCGTTCAGAGAT 134
||||||||| || |||||||||||||||||||||| || | |||||||||||||||||
Sbjct 61 AATTCGATCCGACCCGTTAACAATGGTTGGTCTAACTACACCAGAGGATCGTTCAGAGAT 120
Query 135 TGCCTTTTTCGACGTCGAGACGACAATTCCGTTCCGAGTTGGTCAGGGGTACGCGATTCT 194
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 121 TGCCTTTTTCGACGTCGAGACGACTATTCCGTTCCGAGCTGGTCAAGGGTACGCGATTCT 180
Query 195 GGAGTTTGGATCGATTCTGGTTTGCCCCAAGAAGCTTGTGGAGCTGAA-AAACTACTCTG 253
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 181 GGAGTTTGGATCGATCCTGGTTTGCCCCAAGAAGCTTGTGGAGCT-AAGAAACTACTCTG 239
Query 254 TTCTGGTTCGTCCTGCTAATCTCAACCTCATCACGCCTCGGTCCGTGAAGTGCAACGGCA 313
| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 TCCTGGTTCGACCCGCTAATCTCAACCTCATCACGCCTCGCTCCGTGAAGTGCAACGGCA 299
Query 314 TCAAACGCGAAGACGTCGAATCAGCTCTTACCTTTGCAGATATCGCCGACACCGTCTACG 373
||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||||| ||||
Sbjct 300 TCAAACGAGAAGACGTTGAATCAGCTCCTACGTTTGCAGATATCGCCGATACCGTTTACG 359
Query 374 ATATTCTCCATGGAAGGATATGGGCAGGTCATAACATATTGAAGTTCGATTGTCCAAGGA 433
||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 360 ATATTCTTCATGGAAGGATATGGGCAGGTCACAATATATTGAAGTTTGATTGTCCAAGGA 419
Query 434 TAAGAGAAGCATTTGCTGAGATTGGACGAGATCCACCAGAGCCAAAGGGCACCATTGACT 493
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 TAAGAGAAGCATTTGCTGAGATTGGACGAGATCCACCAGAGCCAAAGGGCACTATTGACT 479
Query 494 CCTTGGCTTTGCTTACTCAAAGGTTTGGGAGAAGAGCTGGTGATATGAAGATGGCGACTT 553
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 480 CGTTGGCTTTGCTTACTCAAAGGTTTGGGAGGAGAGCTGGCGATATGAAGATGGCGACTT 539
Query 554 TGGCTACATACTTTGGACTTGGAAACCAGACGCATAGGAGTCTGGACGATGTAAGGATGA 613
||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 540 TGGCTGCATACTTTGGACTTGGCAACCAGACGCATAGGAGTCTGGACGATGTCAGGATGA 599
Query 614 ACTTCGAGGTTCTCAAGTATTGTGCCACTGTTTTGTTCTTGGAGTCAAGTCTTCCAGATG 673
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 ATTTCGAGGTTCTCAAGTATTGTGCCACTGTTTTGTTCTTGGAGTCAAGTCTTCCGGATG 659
Query 674 AACTTATAGAGAACTCGGTTACTACTACTACTCCTGAAACTAGTTCAAGAAGGCGTAGGA 733
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 660 AACTTATAGAGAACTCGGTTACTACTACTACTCCAGAAACAAGTTCAAGAAGGCGTAGGA 719
Query 734 CTATaaaaaaaTCTCCTCTGCAATCTCCCACTGATCAGCAGACAGGAGAGAACATG-ACA 792
||| |||| |||||||||||||||||| ||||||| |||||||||||||| | | |||
Sbjct 720 ATATCAAAACATCTCCTCTGCAATCTCCTGCTGATCATCAGACAGGAGAGAATA-GTACA 778
Query 793 ACTATACCTATTTTATCATTTGTTTCATCCGCAGAAGCTCAAACGGATCCATTTGATATG 852
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 779 ACTATACCTATTTTATCATTTGTTTCATCCGCAGAAGCTCCAACGGATCCGTTTGATATG 838
Query 853 AGCACTTTGAGGAACGAAATAGCCCCTGAAGTTCTTCAATCAGATGTTCCCATGGAAGAA 912
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 839 AGCACTTTGAGGAACGAAATAGCCCCAGAGGTTCTTCAATCAGATGTTCCCATGGAAGAA 898
Query 913 GAACAAAATCAGCAGTCTGAGACTGTTGCCTCTGAAGGTACCGGTGACCAGGAAGGATTC 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAACAAAATCAGCAGTCTGAGACTGTTGCCTCTGAAGGTACCGGTGACCAGGAAGGATTC 958
Query 973 ATGGAGCTAGATAAAATATCTGTTTCAAGTATCAGAGCAACTCATGTCCCGCTATATGAC 1032
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 959 TTGGAGCTAGATAAAATATCTATTTCAAGTATCAGAGCAACTCATGTCCCATTATATGAC 1018
Query 1033 GGGAGCCAAACAATGAAGCTGCAACTCTTCCTTGGGGACAGACCCCTTCAGCTCCATTGT 1092
|||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||
Sbjct 1019 GGGAGCCAAACAATGAAGGTACAGCTCTGCCTTGGGGACAGACCCCTTCAGCTCCATTGT 1078
Query 1093 CCTCGTCTGAAAGTACGGTTTGGAATCAATGGGAAATTTATGGATAAAGCTGGAAGACGG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 CCTCGTCTGAAAGTACGGTTTGGAATCAATGGGAAATTTATGGATAAAGCTGGGAGACGG 1138
Query 1153 AGGTTGAACTTTGTAATTGATCTGTATCCAAGTCTCTGCAACGTACTTCAAGAATGCGAC 1212
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1139 AGGTTGAACTTTGTAGTTGGTCTGTATCCAAGTCTCTGCAACGTACTTCAAGAATGTGAC 1198
Query 1213 AGTGCTGCACAGACAATATCTGTTGATTCAGGCAGTGGTTCTGACTGGAACCCTCTAGTC 1272
| ||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||
Sbjct 1199 AATGCTGCACAGACAATATCTGTTGATTCAGGCAGCGATTCTGACTGGAACCCTGTGGTC 1258
Query 1273 ATTCCAATGAAAGGATTTCTGAACTGTCCCACTGCAAGGATACATATACCCACAGAGTTA 1332
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 ATTCCAATGAAAGGATTTCTGAACTGTCCCACCGCAAGGATACATATACCCACAGAGTTA 1318
Query 1333 AATGGAGATATAGATCGGTACGCAGCTGAGATACACCAGAAAGAGTTCTCTGGAGCTACT 1392
||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 AATGGAGATGTAGACCGGTATGCAGCTGAGATACACCAGAAAGAGTTCTCTGGAGCTATT 1378
Query 1393 GCTACTCAGAAACTCATTTCTAGCAACCCCAAGGCTGAAGAGATTGAGTCTTTGTTGAAT 1452
|||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 1379 GCTACTCAGAAATTCATTTCAAGCAACCCGAAGGCTGGGGAGATTGAGTCTTTGTTGAAT 1438
Query 1453 CCGAGAACTGTTCTTGACGCTTTCTTGTCTCTGGAGCCATATGATTATCAGCAGAGAGCC 1512
||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCGGGAACTGTTCTCGATGCTTTCTTGTCTCTGGAGCCATATGATTATCAGCAGAGAGCT 1498
Query 1513 GGAATCCGTCTAGTTGCTAGAAAGCTTGTTATACATTAGTGGACCTTACTCAATAGCACC 1572
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1499 GGAATCCGTCTAGTTGCTAGAAAGCTTGTTATACATTAGTAAACCTTACTCAATAGC--- 1555
Query 1573 ACAGAGAATTAAAGAAATCAGAGTTTAGTGGACTGTAGAGATTTATTTATGTAGTCATGA 1632
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 --------T-AAAGAAATCAGAGTTTAGTGGACTGTAGAGATTTATTTATGTAGTCATGA 1606
Query 1633 AAGAAACACAGAACTGTTGTTCCTGACAGTAGATATACAGCTGATTATGTTCTTAGTTT 1691
|||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1607 AAGAAACACACAACTGCTGTTCCTGACAGTAGATATATAGCTGATTCTGTTCTTAGTTT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5