BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61400.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950896 jgi|Araly1|950896|scaffold_802783.1 2704 0.0
> Ahg950896 jgi|Araly1|950896|scaffold_802783.1
Length=2241
Score = 2704 bits (1464), Expect = 0.0
Identities = 1827/1994 (92%), Gaps = 58/1994 (3%)
Strand=Plus/Plus
Query 1 ATGTTGAAGCTTCTGCTTCCCCAACAT---AGAA---CATCAGTTTACTTGTTCAAGTTT 54
|||||||||| |||| ||| ||||||| |||| | |||| |||||| | |||||||
Sbjct 100 ATGTTGAAGCATCTGTTTCTCCAACATAGAAGAACTTCTTCAGCTTACTTCTACAAGTTT 159
Query 55 CAATTTTTCAACTTTAGATTCTTATCTCAATCTCCTTCTCTGTCAAATTCGGCA------ 108
|||||||||| ||||||||| || ||||| || |||| |||| ||||||| |||
Sbjct 160 CAATTTTTCACCTTTAGATTGTTCTCTCAGTCACCTTATCTGCCAAATTCAGCATCTTCG 219
Query 109 -T-CT-TC----T--T--TC-TCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 156
| || || | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 220 TTGCTCTCTTTGTCGTCGTCTTCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 279
Query 157 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGAGATCTCGAG-TCTCCAAGTC 215
|||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| |
Sbjct 280 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGATTTCTCG-GCTCTCGAAGAC 338
Query 216 AAACG-ATCTTCAATCTTTTTCGGCAGTGATTCATGTTTTAACCGGAGCTCACAAGTATA 274
|| || |||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 339 AA-CGGATCTCCAATCTTTTTCAGCTGTAATTCATGTTTTAACCGGAGCTCACAAGTATA 397
Query 275 CGCTCGCCAGATGTTTGATAAAAAGCCTCATAGAACGTCTGAAACGCCACAGTGAGCCGA 334
|||||||||| ||||||||||||||||||||||| ||||| | ||| ||||||||||||
Sbjct 398 CGCTCGCCAGGTGTTTGATAAAAAGCCTCATAGAGCGTCTCAGGCGCTACAGTGAGCCGA 457
Query 335 GTAACATGTCTCATAGACTTTTCAATGCTCTGGAAGATATTCAGAGTCCAAAATTCAGTA 394
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 458 CTAACATTTCTCATAGACTTTTCAATGCTCTTGAAGATATTCAGAGTCCAAAATTCAGTA 517
Query 395 TCGGAGTGTTTAGTCTATTGATTATGGAGTTTCTGGAGATGGGTTTGTTTGAAGAAGCTC 454
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct 518 TCGGAGTGTTTAGTCTATTGATCATGGAGTTTTTGGAGATGGGTTTGTTTGAAGATGCTC 577
Query 455 TTTGGGTGAGTCGAGAGATGAAATGTTCACCGGATTCAAAAGCTTGTCTTTCGATTTTGA 514
||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||
Sbjct 578 TTTGGGTGAGTCGAGAGATGAGATGTTCACCGGATTCGAAAGCTTGTCTTGCCATTTTGA 637
Query 515 ATGGCTTGGTTAGAAGGAGACGGTTTGATTCAGTTTGGGTTGATTACCAACTTATGATCT 574
|||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 638 ATGGATTGGTTAGAAGGAGAAGGTTTGATTCTGTCTGGGTTGATTACCAACTTATGATCT 697
Query 575 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTTTGTTTTGTTTCAATGCTGTTTCAAGC 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 698 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTCAGTTTTGTTTCAATGCTGTTTCAAGC 757
Query 635 AAGGTCTTTAC-TCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGATCAAG 693
||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 758 AAGGT-TTTCCCTCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGGTCAAG 816
Query 694 CCGAATGTTTATATCTATACCATATATATCCTTGATCTCTGTAGGGATAATAAGATGGAG 753
|| |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 817 CCAAATGTTTATATCTATACCATATATATCCGTGATCTGTGTAGGGAAAATAAGATGGAA 876
Query 754 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTCTTCCAAACTTGTATACT 813
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 877 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTGTTCCAAACTTGTATACT 936
Query 814 TACAGTGCAATGATTGATGGTTACTGCAAGACCGGTAACGTGAGACAAGCTTACGGATTG 873
||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||
Sbjct 937 TACAGTGCAATGATTGATGGTTATTGTAAGACCGGTAACCTGAGACAAGCTTACGGCTTG 996
Query 874 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGTACATTGGTC 933
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 997 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGCACATTGGTC 1056
Query 934 GATGGATTTTGCAAAGCTCGCGAATTGGTAACTGCGAGGAGCCTTTTCGTGCATATGGTG 993
||||| |||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1057 GATGGTTTTTGCAAAGCTCGCGAATTGGTAGCTGCAAGAAGCCTTTTCGTGCATATGGTG 1116
Query 994 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACATTGCAAA 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1117 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACAGTGCAAA 1176
Query 1054 TCAGGGAACATGTTGGAAGCAGTGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TCAGGGAACATGTTGGAAGCAATGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1236
Query 1114 CCTGATGTATTCACTTACACTATACTTATCAACGGGCTATGTATTGAAGATCAGG-TAGC 1172
||||||||||||||||| ||||||||||||||||||||||||| |||||| | || ||||
Sbjct 1237 CCTGATGTATTCACTTATACTATACTTATCAACGGGCTATGTACTGAAGAGC-GGCTAGC 1295
Query 1173 AGAAGCAAATCGATTATTTCAGAAGATGAAGAATGAGAGAATTTTTCCGAGCTCTGCGAC 1232
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1296 AGAAGCAAATCGATTATTTCAGAGGATGAAGAATGAGAGAATTTTTCCGAGCTCTGTGAC 1355
Query 1233 TTACAACTCGCTGATTCATGGGTATTGTAAAGAATACAATATGGAGCAAGCTCTGGATTT 1292
|||||| |||||||||||||||| ||||||||| |||||||| ||| |||||||||||||
Sbjct 1356 TTACAATTCGCTGATTCATGGGTTTTGTAAAGAGTACAATATAGAGAAAGCTCTGGATTT 1415
Query 1293 GTGCTCTGAGATGACAGCAAGTGGTGTAGAACCCAACATCATAACCTTTTCTACTTTGAT 1352
|||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1416 GTGCTCTGAGATGACATCAAGTGGGGTAGAACTCAACATCATAACCTTTTCTACTTTGAT 1475
Query 1353 CGATGGTTACTGCAATGTGAGAGACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1412
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1476 CGACGGTTACTGCAAAGTGAGAAACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1535
Query 1413 CATCAAAGGTATAGTTCCTGATGTTGTGACCTACACAGCTTTGATTGATGCACATTTCAA 1472
||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1536 CATTAAAGGTATAGTTCCTGATGTTGTGACCTACACAACTTTGATTGATGCGCATTTCAA 1595
Query 1473 GGAGGCCAACATGAAAGAAGCACTCAGGCTGTATAGTGACATGCTAGAGGCAGGAATCCA 1532
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 1596 GGAGGCCAACATGAAAGAAGCACTCAGACTGTACAGTGACATGCTAGAGGCTGGAATTCA 1655
Query 1533 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGACGACTCTC 1592
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1656 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGGCGACTCTC 1715
Query 1593 TGTTGCCATCGATTTTTATCAAGAAAACAATCAA-C---A---G--A------------- 1630
|| ||||||||||||||||| ||||||||||||| | | | |
Sbjct 1716 TGATGCCATCGATTTTTATCTAGAAAACAATCAAGCTGCAACCGGTAAATCCATTTTCCA 1775
Query 1631 G-G-AGCTGTTGGAA-TCATGTGGGGTTTACATGCTTGATTGAAGGGTTGTGTCAGAACG 1687
| | ||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1776 GAGGAGCTGCTGGAAAT-ATGTGGGGTTTACATGCTTGATTGAAGGGTTATGTCAGAACG 1834
Query 1688 GCTACATTCTTAGAGCTAGCAGATTCTTCTCAGACATGAGATCCTGCGGGATAACCCCTG 1747
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1835 GCTACATTCTTAGAGGTAGCAGATTCTTCTCAGACATGAGATCCGGCGGGGTAACCCCTG 1894
Query 1748 ACATATGCAGTTACGTTTCAATGTTAAAGGGCCACCTCCAAGAAAAGCGTATTACTGATA 1807
||||||| |||||||| || |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 1895 ACATATGGAGTTACGTATCGATGTTAAAGGCCCACCTCCGAGAAAAGCGTATTACAGATA 1954
Query 1808 CAATGATGTTGCAGTGTGACATGATCAAAACTGGGATATTGCCAAACCTTTTGGTGAATC 1867
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1955 CAATGATGTTGCACTGTGACATGATCAAAACTGGGATATTGCCAAACCTTATGGTGAATC 2014
Query 1868 AATTGCTAGCCAGGTTTTACCAAGCGAATGGATATGTAAAATCAGCTTGTTTTTTGACCA 1927
|||||||||||| |||||| |||| |||||||||| ||| |||||||||||| |||||||
Sbjct 2015 AATTGCTAGCCATGTTTTATCAAGAGAATGGATATCTAAGATCAGCTTGTTTCTTGACCA 2074
Query 1928 ATTCAAGTCGTTTG 1941
||||||||||||||
Sbjct 2075 ATTCAAGTCGTTTG 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5