BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61410.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950897 jgi|Araly1|950897|scaffold_802784.1 1448 0.0
Ahg950896 jgi|Araly1|950896|scaffold_802783.1 211 1e-53
> Ahg950897 jgi|Araly1|950897|scaffold_802784.1
Length=886
Score = 1448 bits (784), Expect = 0.0
Identities = 852/885 (96%), Gaps = 3/885 (0%)
Strand=Plus/Plus
Query 250 TTGAGTCTTTGATTAGGGACATGTCAACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCC 309
|||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2 TTGAATCTTTGATT-CGGACATGTCGACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCC 60
Query 310 AGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCCTTTT 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGGTCAATGGGTTTGGTCTTAGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCGTTTT 120
Query 370 CTTTCTCCAGAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTT 429
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 121 CTTTCTCCAGAAGGAGAAGTCATGGAATTGTCAAGGCCTCAGCTCGGGTTGATAAGTTTT 180
Query 430 CGAAAAGTGATATCATTGTTTCTCCCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCG 489
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CCAAAAGTGATATCATTGTTTCTCCCTCAATTCTCTCGGCTAATTTCGCCAAATTAGGCG 240
Query 490 AGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACG 549
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 241 AGCAGGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTGATGGATG 300
Query 550 GTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGA 360
Query 610 CAGATCTTCCTTTGGATGTTCATCTGATGATAGTGGAACCCGAGCAGAGAGTACCGGATT 669
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 CAGATCTTCCGTTGGATGTTCATCTTATGATAGTGGAACCCGAGCAGAGAGTACCGGATT 420
Query 670 TCATCAAAGCAGGTGCAGATATTGTCAGTGTACATTGTGAACAGCAATCCACCATCCATT 729
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 421 TCATCAAAGCAGGTGCAGATATAGTCAGTGTACATTGTGAACAGCAATCGACTATCCATT 480
Query 730 TGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTTCTAAACC 789
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TGCATCGTACCGTCAATCAAATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTCCTAAACC 540
Query 790 CTGGAACCCCATTGAGTGCAATAGAATATGTCTTGGATATGGTGGATCTGGTCTTGATCA 849
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 541 CTGGAACCCCATTGACTGCAATAGAATATGTCTTGGATGTTGTGGATCTGGTCTTGATCA 600
Query 850 TGTCGGTCAACCCTGGTTTTGGTGGACAGAGCTTTATTGAAAGCCAAGTAAAGAAAATCT 909
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 TGTCGGTCAACCCCGGTTTTGGTGGACAGAGCTTTATCGAAAGCCAAGTAAAGAAAATCT 660
Query 910 CGGACTTGAGGAAAATGTGTGCAGAGAAGGGAGTAAACCCATGGATTGAAGTTGATGGTG 969
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 CGGACTTGAGAAAAATGTGTGCAGAAAAGGGAGTAAACCCATGGATTGAAGTTGATGGTG 720
Query 970 GTGTCACTCCAGCGAATGCGTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTG 1029
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGTCACTCCAGCGAACGCTTACAAGGTTATTGAGGCTGGAGCAAATGCTCTAGTGGCTG 780
Query 1030 GATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGCTATAAAAGGAATTAAGGCCAGCA 840
Query 1090 A-ACGACCAGCAGCTGTAGCTGTGTAATGTGAAGCAACAGCAAGC 1133
| | | |||| ||||||||||||||||||||||| |||| |||||
Sbjct 841 AGAGG-CCAGAAGCTGTAGCTGTGTAATGTGAAGAAACAACAAGC 884
> Ahg950896 jgi|Araly1|950896|scaffold_802783.1
Length=2241
Score = 211 bits (114), Expect = 1e-53
Identities = 134/143 (94%), Gaps = 4/143 (3%)
Strand=Plus/Minus
Query 1233 AAGAATCAAACTCA-ATATCTTCAAAGTAGGCTCCTCTATACTATTCTGTACCATTGTCT 1291
||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2238 AAGAATCAATCT-ATATATCTACAAAGTAGGCTCCTCTATACTATTCTGTACCATTGTCT 2180
Query 1292 TGTAAATTGAGGATATGCAGATTCCATACATTTTGCAATGAAACACTGTGATAAGAAATA 1351
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 2179 TGTAAATTGAGGATATGCAGATTCCATACATTTTGCAATGAAACTCTGTAATAAGAAATA 2120
Query 1352 TGTTGTTACATATGTGTTTTTGA 1374
|| |||||||| ||||||||||
Sbjct 2119 TGCTGTTACAT--GTGTTTTTGA 2099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5