BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G61412.1

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917892 jgi|Araly1|917892|Al_scaffold_0008_2643                    182    2e-45


> Ahg917892 jgi|Araly1|917892|Al_scaffold_0008_2643
Length=237

 Score =  182 bits (98),  Expect = 2e-45
 Identities = 181/218 (83%), Gaps = 18/218 (8%)
 Strand=Plus/Plus

Query  49   ATGAGT-GGAAAACGCAGCAATGTCGGTGGAGGAAAGAGCGGTGGCGCTGGAGGTAAGAG  107
            |||||| |||||| |||| |  | |||||||||||||||||| |||| |||||| || ||
Sbjct  1    ATGAGTGGGAAAA-GCAGTAGCGGCGGTGGAGGAAAGAGCGGCGGCGGTGGAGG-AA-AG  57

Query  108  TGGTGGTGGCGGACAA-AGCAGTGG---CGGAGGAAAAAGCGGCGGCGGAG-GAGCAGGA  162
              | || |||||  ||  | |||||   |||||||||||| ||  | | || | |||  |
Sbjct  58   -AGCGGCGGCGG-TAATGGAAGTGGCAACGGAGGAAAAAGTGG-TG-GAAGTG-GCA--A  110

Query  163  GCAGGTAATATGGTAGCACCAGGGACAAATGGGGGTGCTTACATCTCAAGAGGTGGATTC  222
             | ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| 
Sbjct  111  -C-GGTAACATGGTAGCACCAGGGACAAATGGGGCTGCTTACATTTCAAGAGGTGGATTT  168

Query  223  GAGAGTAACCCTCAAGGTTACTTTAGTAACTTGCATGG  260
            ||||||||||||||||||||||||||||||||||||||
Sbjct  169  GAGAGTAACCCTCAAGGTTACTTTAGTAACTTGCATGG  206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10073075496


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5