BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61420.2
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950898 jgi|Araly1|950898|scaffold_802785.1 1735 0.0
Ahg487604 jgi|Araly1|487604|fgenesh2_kg.6__738__AT5G07690.1 427 1e-118
Ahg892702 jgi|Araly1|892702|Al_scaffold_0006_698 411 1e-113
Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1 134 2e-30
Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2 67.6 2e-10
> Ahg950898 jgi|Araly1|950898|scaffold_802785.1
Length=1156
Score = 1735 bits (939), Expect = 0.0
Identities = 1074/1137 (94%), Gaps = 18/1137 (2%)
Strand=Plus/Plus
Query 2 AATGTCAAGAAAGCCATGTTGCGTCGGAGAAGGCTTGAAGAAAGGAGCATGGACCACCGA 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 AATGTCAAGAAAGCCATGTTGCGTCGGAGAAGGCTTGAAGAAAGGAGCATGGACCACCGA 82
Query 62 GGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACAT 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 83 GGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGAGAGGGAGGCTGGCGCGACAT 142
Query 122 TCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACTA 181
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 143 TCCCCAAAAAGCTGGCTTGAAGCGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAATTA 202
Query 182 CCTTAAACCTGAGATCAAAAGAGGCGAGTTTAGTTCAGAGGAAGAGCAGATTATCATCAT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CCTTAAACCTGAGATCAAAAGAGGCGAGTTTAGTTCAGAGGAAGAGCAGATTATCATCAT 262
Query 242 GCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAGAAC 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 263 GCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTAATAGCGAGACATTTACCTAGAAGAAC 322
Query 302 AGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGAACAGGG 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 323 AGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATCGAACAGGG 382
Query 362 TATTGATCCCGTGACTCACAAGCCACTGGCTTCTAGTTCCAACCCTACGGTCGATGAGAA 421
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 383 TCTTGATCCCGTGACTCACAAGCCACTAGCTTCTAGTTCCAACCCTACGGTTGATGAGAA 442
Query 422 TTTGAATTCCCCAAATGCCTCTAGTTCCGACAAGCAATACTCCCGATCGAGCTCAATGCC 481
||| ||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct 443 TTTAAATTCCCTAAATGACTCTAGTTCCGACAAGCAGTACTCCCGGTCGAGCTCAATGCC 502
Query 482 TTTTCTGTCTCGTCCTCCTCCATCCAGTTGCAACATGGTTTCCAAGGTCTCCGAGCTTAG 541
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 503 TACTCTGTCTCGTCCTCTTCCATCCAGTTGCAACATGGTTTCCAAGGTCTCCGAGATTAG 562
Query 542 CAGCAATGATGGGACACCGATTCAAGGCAGTTCCTTGAGTTGCAAGAAACGTTTCAAGAA 601
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 563 CAGCAATGATGGGACACCGGTGCAAGGTAGTTCCTTGAGTTGCAAGAAACGTTTCAAGAA 622
Query 602 ATCAAGTTCTACATCAAGGCTCTTGAACAAAGTTGCGGCTAAGGCCACTTCCATCAAAGA 661
||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 623 ATCGAGTTCTACGTCAAGGCTATTGAACAAAGTTGCTGCTAAGGCCACTTCCATCAAAGA 682
Query 662 TATATTGTCGGCTTCCATGGAAGGTAGCTTGAGTGCTACTACAATATCACATGCAAGCTT 721
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 683 TATATTGTCGGCTTCCATGGAAGGTAGCTTGAGTGCTACTACCATGTCACATGCAAGCTT 742
Query 722 TTTTAATGGCTTCACTGAGCAGATTCGCAATGAAGAGGATAGTTCTAACACATCCCTGAC 781
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 743 CTTTAATGGCTTCACTGAGCAGATTCGCAATGGAGAGGATAGTTCTAACACATCCCTGAC 802
Query 782 AAATACTCTTGCTGAATTTGATCCCTTCTCCCCATCATCGTTGTACCCCGAACATGAGAT 841
|||||||||||| ||||| || ||||| |||||||| ||||||||||| || ||||||||
Sbjct 803 AAATACTCTTGCCGAATTCGACCCCTTATCCCCATCCTCGTTGTACCCTGAGCATGAGAT 862
Query 842 CAATGCTACTTCTGATCTCAACATGGACCAAGATTACGATTTTTCACAATTTTTCGAAAA 901
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 863 CAATGCTACTTCTGATCTCAACATGGACCAAGATTTCGATTTTTCACAATTTTTCGAAAA 922
Query 902 ATTCGGAGGAGATAACCACAATGAGGAGAACAGTATGAATG-A---T-C--TC-----CT 949
| |||||||||||||||||||||| |||||||||||||||| | | | || ||
Sbjct 923 ACTCGGAGGAGATAACCACAATGAAGAGAACAGTATGAATGTAGAGTACAGTCATGATCT 982
Query 950 --TA-TGTCCGATGTTTCCCAAGAAGTCTCATCAACTAGCGTTGATGATCAAGACAATAT 1006
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CCTTCTGTCCGATGTTTCCCAAGAAGTCTCATCAACTAGCGTTGATGATCAAGACAATAT 1042
Query 1007 GGTAGGAAACTTCGAGGGATGGTCAAATTATCTTCTTGACCATACCAATTTTATGTATGA 1066
|||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct 1043 GGTAGGAAACTTCGAGGGGTGGTCAAATTATCTT---GACCATACCGATTTTATGTATGA 1099
Query 1067 CACCGACTCAGACTCGCTTGAAAAGCATTTCATATGAGTCTTCATATCCAAACAGAA 1123
||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1100 CACCGACTCGGACTCGCTCGAAAAGCATTTCATATGACTCTTCATATCCAAACAGAA 1156
> Ahg487604 jgi|Araly1|487604|fgenesh2_kg.6__738__AT5G07690.1
Length=1417
Score = 427 bits (231), Expect = 1e-118
Identities = 339/391 (87%), Gaps = 8/391 (2%)
Strand=Plus/Plus
Query 2 AATGTCAAGAAAGCCATGTTGCGTCGGAGAA-GGCTTGAAGAAAGGAGCATGGACCACCG 60
||||||||||||||||||||| || |||||| ||| |||||||||||||||||| | |||
Sbjct 210 AATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGGC-TGAAGAAAGGAGCATGGATCGCCG 268
Query 61 AGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACA 120
| || ||||||||||||||||||||||| || || ||||| || ||||||||||| ||||
Sbjct 269 AAGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACA 328
Query 121 TTCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACT 180
| |||||||||||||| | ||||| |||||||||||||||||| |||||||| | ||||
Sbjct 329 TCCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACT 388
Query 181 ACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGCAGATTATCAT 238
| || |||||||| ||||| ||||| | |||||||| | ||||| || |||||||||||
Sbjct 389 A-TTTGAAACCTGATATCAAGAGAGGAGGGTTTAGTT-ACGAGGAGGAACAGATTATCAT 446
Query 239 CATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAG 298
||||||||| || ||||| |||||||||||||| ||||||||||||||||| || | |||
Sbjct 447 CATGCTTCACGCCTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAG 506
Query 299 AACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGA-AC 357
|||||| |||||||| ||||||||||||||||||||||||||||| || |||| || |
Sbjct 507 AACAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCGCCTGATCGATA- 565
Query 358 AGGGTATTGATCCCGTGACTCACAAGCCACT 388
|||| || ||||||||| | |||||||||||
Sbjct 566 AGGGAATCGATCCCGTGGCCCACAAGCCACT 596
> Ahg892702 jgi|Araly1|892702|Al_scaffold_0006_698
Length=1017
Score = 411 bits (222), Expect = 1e-113
Identities = 340/397 (86%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 3 ATGTC-AAGAAAGCCATGTTGCGTCGGAGAAGGCTTGAAGAAAGGAGCATGGACCACCGA 61
||||| |||| | | |||||| |||||||||| |||||||||||||||||||| | ||
Sbjct 1 ATGTCAAAGAGA-CTATGTTGTATCGGAGAAGGATTGAAGAAAGGAGCATGGACTATAGA 59
Query 62 GGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACAT 121
||||| ||||||||||||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct 60 AGAGGATAAGAAACTCATCTCTTATATCCACGAGCACGGTGAAGGAGGCTGGCGTGACAT 119
Query 122 TCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACTA 181
||| ||||||||||| |||||||||||||||||||||||||| | || ||||| |||||
Sbjct 120 TCCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTA 179
Query 182 CCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGCAGATTATCATC 239
|| ||||| || ||||| ||||| |||||||| | | |||||||||||||||||||||
Sbjct 180 -TTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCT-ATGAGGAAGAGCAGATTATCATC 237
Query 240 ATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAGA 299
||||||||||| ||||||||||| |||||||| |||||| |||||||| || | ||||
Sbjct 238 ATGCTTCATGCCTCTCGTGGCAATAAGTGGTCCACCATAGCAAGACATTTGCCAAAAAGA 297
Query 300 ACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGA-ACA 358
|| || |||||| |||||||||| |||||||| |||||||| ||||||||||| || | |
Sbjct 298 ACGGATAACGAGGTCAAGAACTATTGGAACACACATCTCAAGAAACGTTTGATCGATA-A 356
Query 359 GGGTATTGATCCCGTGACTCACAAGCCACTGGCTTCT 395
|| |||||||||||||| ||||||||||| | ||||
Sbjct 357 TGGCATTGATCCCGTGACACACAAGCCACTAGATTCT 393
> Ahg477416 jgi|Araly1|477416|fgenesh2_kg.3__117__AT3G01140.1
Length=1412
Score = 134 bits (72), Expect = 2e-30
Identities = 271/363 (75%), Gaps = 30/363 (8%)
Strand=Plus/Plus
Query 36 TTGAAGAAAGGAG-CATGGACCACC-GAGGAGGA-CAAGAAACTCATCTCTTACATCCAC 92
||||||||||| | | |||| |||| || ||||| | ||||||| | |||| || |
Sbjct 310 TTGAAGAAAGG-GCCTTGGA-CACCAGAAGAGGATC-AGAAACTTTTGGCTTATATTGAA 366
Query 93 GACCACGGCGAGGGAGGCTGGCGCGACATT-CCCCAAAAAGCTGGGT-T-GAAACGGTGT 149
|| || ||| | ||| ||||||| | || || | ||||| ||| | ||| | ||
Sbjct 367 GAACATGGCCATGGAAGCTGGCG-TTCTTTGCCTGAGAAAGC-CGGTCTCCAAA-GATGC 423
Query 150 GGAAAGAGTTGTAGACTGC-GATGGACCAACTACCTTAA-ACCTGAGATCAAAAGAGGCG 207
||||||||||| ||||| | ||||||| ||||||| ||| |||||| ||||| ||||||
Sbjct 424 GGAAAGAGTTGCAGACT-CAGATGGACTAACTACC-TAAGACCTGACATCAAGAGAGGCA 481
Query 208 AGTTTA--GTTCAGAGGAAGAGCAGATTATCA-TCATGCTTCATGCTTCTCGT-GGCAAC 263
| || | || || | ||||| || | |||| ||| || ||||| |||| | || |||
Sbjct 482 AATTCACTGTACA-A-GAAGAACAAACCATCATTCA-ACTCCATGC-TCTCCTCGGAAAC 537
Query 264 AAGTGGTCGGTC-ATAGCGAGACATTTACCTAGAAGAACAGACAACGAGATCAAGAACTA 322
| |||||| | | || || | || ||||| | ||| |||||||||||||||||||||||
Sbjct 538 AGGTGGTCAG-CAATTGCAACTCACTTACCCAAAAGGACAGACAACGAGATCAAGAACTA 596
Query 323 CTGGAACACGCATCTCAAA-AAACGTTTGATGGAACA-GGGTATTGATCCCGTGACTCAC 380
||||||||| || || || |||||| || | || | ||| || ||||| ||||| |||
Sbjct 597 CTGGAACACACA-CTTGAAGAAACGTCTGGTCAAA-ATGGGGATAGATCCAGTGACCCAC 654
Query 381 AAG 383
|||
Sbjct 655 AAG 657
> Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2
Length=1723
Score = 67.6 bits (36), Expect = 2e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 288 TTACCTAGAAGAACAGACAACGAGATCAAGAACTACTGGAACACG 332
||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 384 TTACCGGGAAGAACAGACAACGAGATCAAGAACTATTGGAACACG 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5