BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61430.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496302 jgi|Araly1|496302|fgenesh2_kg.8__2118__AT5G61430.1 2106 0.0
Ahg487602 jgi|Araly1|487602|fgenesh2_kg.6__736__AT5G07680.1 859 0.0
Ahg477665 jgi|Araly1|477665|fgenesh2_kg.3__366__AT3G04060.1 254 2e-66
> Ahg496302 jgi|Araly1|496302|fgenesh2_kg.8__2118__AT5G61430.1
Length=1426
Score = 2106 bits (1140), Expect = 0.0
Identities = 1348/1443 (93%), Gaps = 35/1443 (2%)
Strand=Plus/Plus
Query 1 Attttcctcttcatcttcctaacctttctccctaacttctctgttcatctttttctctct 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATTTTCCTCTCCATCTTCCTAACCTTTCTCCCTAACTTCTCTGTTCATCTTTTTC-CTCT 59
Query 61 ttATTTATAAATTTATCTGCATAGTACT-CTCTGAATCTATATCTTCaaaaaaaaaaaaC 119
||||||||||||||| | ||||||| | || || ||| || ||||| |||||| |
Sbjct 60 CTATTTATAAATTTATTTACATAGTATTCCT-TGGATCCATCTCTTC-----AAAAAACC 113
Query 120 GTCCAAGATCAAATCAAGAAA--C-C-C-A---T-T-aa--a-aaaaaaaa-TCAGGTTT 165
| |||||||||||||||||| | | | | | | || | |||||||| | | ||||
Sbjct 114 TTTCAAGATCAAATCAAGAAACCCACACAAGTTTCTAAATCAGAAAAAAAATTTAAGTTT 173
Query 166 TGGTTTCAGTTTTAAGGGTTTAAGGTTTCTTGGGGAAGAAACGATGGAGACTTTTTGTGG 225
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 174 TGGTTTCAATTTTAAGGGTTTAAGGTTTCTTGGGAAAGAAACGATGGAGACTTTTTGTGG 233
Query 226 GTTTCAAAAGGAGGAAGAGCAGATGGATTTACCTCCTGGGTTCAGGTTTCATCCAACAGA 285
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 234 GTTTCAGAAGGAAGAAGAGCAGATGGATTTACCTCCAGGGTTCAGGTTTCATCCAACAGA 293
Query 286 TGAAGAACTCATAACTCACTATCTCCATAAGAAGGTTCTTGACACCAGCTTCTCAGCTAA 345
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 294 TGAAGAACTCATAACTCACTATCTCCATAAGAAGGTTCTTGACATCAGCTTCTCAGCTAA 353
Query 346 AGCTATCGGTGAAGTTGATTTAAACAAATCAGAGCCATGGGAGTTACCATGGATGGCAAA 405
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 354 AGCTATTGGTGAAGTTGATTTAAACAAATCGGAGCCATGGGAGTTACCATGGATGGCAAA 413
Query 406 AATGGGTGAGAAAGAATGGTATTTTTTCTGTGTGAGAGACAGAAAGTATCCCACCGGTTT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AATGGGTGAGAAAGAATGGTATTTTTTCTGTGTGAGAGACAGAAAGTATCCCACCGGTTT 473
Query 466 AAGAACTAACCGAGCAACTGAAGCCGGTTATTGGAAGGCGACCGGGAAGGATAAAGAGAT 525
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 AAGGACTAACCGAGCAACTGAAGCCGGTTATTGGAAGGCCACCGGGAAGGATAAAGAGAT 533
Query 526 ATACCGAGGCAAATCACTTGTTGGGATGAAGAAGACACTTGTTTTCTATAGAGGAAGAGC 585
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 534 ATACCGAGGCAAATCGCTTGTTGGGATGAAGAAGACACTTGTTTTCTATAGAGGACGAGC 593
Query 586 TCCTAAAGGTCAGAAAACCAACTGGGTGATGCATGAGTACAGGCTTGAAGGAAAATTCTC 645
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 TCCTAAAGGTCAGAAAACCAACTGGGTGATGCATGAGTATAGGCTTGAAGGAAAATTCTC 653
Query 646 TGCCCATAACTTGCCGAAAACCGCAAAGAATGAATGGGTGATATGCAGGGTGTTCCAAAA 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CGCCCATAACTTGCCGAAAACCGCAAAGAATGAATGGGTGATATGCAGGGTGTTCCAAAA 713
Query 706 GAGTGCTGGAGGGAAGAAGATCCCGATTTCGAGTCTAATCCGAATCGGTTCACTCGGAAC 765
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 714 GAGTGCTGGAGGGAAGAAGATCCCGATTTCGAGTCTAATCCGAATTGGTTCACTTGGAAC 773
Query 766 CGACTTTAACCCTTCGCTTTTGCCCTCTTTAACCGATTCTTCGCCTTACAACGATAAAAC 825
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 774 CGATTTTAACCCTTCGCTTTTGCCCTCTTTAACCGATTCTTCGCCTTACAATGACAAAAC 833
Query 826 CAAAACAGAACCGGTCTACGTGCCCTGCTTCTCCAACCAAACGGATCAAAACCAAGGAAC 885
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CAAGACAGAACCCGTCTACGTGCCCTGCTTCTCCAACCAAACGGATCAAAACCAAGGAAC 893
Query 886 CACACTCAATTGCTTCAGCAGCCCTGTTCTTAACTCGATCCAAGCCGACATTTTTCACAG 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 CACACTCAATTGCTTCAGCAGCCCTGTTCTTAACTCGATCCAAGCCGACATTTTCCACAG 953
Query 946 GATTCCACTCTATCAAACTCAGTCCCTCCAGGTTTCTATGAATCTACAGAGCCCGGTTCT 1005
|||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||
Sbjct 954 GATTCCACTCTATCAAACTCAGTCTCTCCAGGTTTCCACGAATCTACAGAGCCCGATTCT 1013
Query 1006 CACGCAAGAACACTCAGTTCTACATGCTATGATCGAGAACAACAGAAGACAAAGTCTCAA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 CACGCAAGAACACTCAGTTCTACATGCTATGATCGAGAACAACAGAAGACAGAGTCTCAA 1073
Query 1066 AACGATGAGTGTCTCACAAGAAACCGGAGTTTCAACTGACATGAACACTGATATCTCATC 1125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 AACGATGAGTGTCTCACAAGAAACCGGAGTTTCGACTGACATGAACACTGATATCTCATC 1133
Query 1126 GGATTTTGAATTTGGTAAGAGACGGTTTGATTCTCAAGAAGATCCGTCTTCCTCTACTGG 1185
|||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1134 GGATTTTGAATTCGGTAAGAGACGATTTGATTCTCAAGAAGATCCATCTTCCTCCACAGG 1193
Query 1186 ACCGGTTGATCTTGAACCTTTCTGGAATTACTGAAGATGATTCAAGATTCTCATGTCCAT 1245
||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||||
Sbjct 1194 ACCGGTTGATCTTGAACCTTTCTGGAATTACTGAAGAAGATTCAAGAGTCACATGCCCAT 1253
Query 1246 TAATTTACTGTGGTGTGTTAAAGTTTGTATAGGCTATTGTCATATACTCTCATATCAACT 1305
|||||||||||||||||||||||||||||||| ||| || || || || ||||||
Sbjct 1254 TAATTTACTGTGGTGTGTTAAAGTTTGTATAG---ATT---AT-TA-TC--ATCTCAACT 1303
Query 1306 TCCACTATATATTATAA-CAATTTAAAGAAACTTAAAAATATGATTTGATATATGACTAA 1364
|||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1304 TCCACTATTTATTATACTCAATTTAAAGAAACTTAAAAATATGATTTGATATTTGACCAA 1363
Query 1365 AGTATTATA--ATACAATTTTGTACCTCTACGATGTTTATAATCAAATGTATATTTTAGA 1422
| ||||| | |||||||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 1364 AATATTACACTATACAATTTTGTACCTGTACGATGTTCATAATTAAATGTATATTTTAGA 1423
Query 1423 ACT 1425
|||
Sbjct 1424 ACT 1426
> Ahg487602 jgi|Araly1|487602|fgenesh2_kg.6__736__AT5G07680.1
Length=1368
Score = 859 bits (465), Expect = 0.0
Identities = 898/1096 (82%), Gaps = 73/1096 (7%)
Strand=Plus/Plus
Query 156 aaTCAGG-TTTTG-GTTTCAGTTTTAAGGGTTTAAGGTTTCTTGGGGAAGAAACGATGGA 213
||||||| ||||| |||| |||| |||||||||||||| || ||| || ||||||
Sbjct 165 AATCAGGTTTTTGCTTTTC--TTTT-AGGGTTTAAGGTTT-TT-TTAAAG-AA-GATGGA 217
Query 214 GACTTTTTGTGGGTTTCAAAAGG-AG--GAAGAGCAGATGGATTTACCTCCTGGGTTCAG 270
||||| ||| |||||| |||| || || |||||||||||||| |||||||| || ||
Sbjct 218 AACTTTCGGTGTGTTTCACAAGGAAGATGATGAGCAGATGGATTTGCCTCCTGGTTTTAG 277
Query 271 GTTTCATCCAACAGATGAAGAACTCATAACTCACTATCTCCATAAGAAGGTTCTTGACAC 330
||||||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 278 GTTTCATCCAACAGACGAAGAACTCATAACCCACTATCTTCACAAGAAGGTTCTCGACAT 337
Query 331 CAGCTTCTCAGCTAAAGCTATCGGTGAAGTTGATTTAAACAAATCAGAGCCATGGGAGTT 390
||| ||| | ||||||||||| ||||| |||||||| |||||| | ||||||||||||||
Sbjct 338 CAGTTTCGCGGCTAAAGCTATTGGTGAGGTTGATTTGAACAAAGCTGAGCCATGGGAGTT 397
Query 391 ACCATGGATGGCAAAAATGGGTGAGAAAGAATGGTATTTTTTCTGTGTGAGAGA-CAGAA 449
|||| | |||||||||||||||||||||||||| |||||||||||||| || | |||
Sbjct 398 GCCATATAAAGCAAAAATGGGTGAGAAAGAATGGTACTTTTTCTGTGTGAGGGATC-GAA 456
Query 450 AGTATCCCACCGGTTTAAGAACTAACCGAGCAACTGAAGCCGGTTATTGGAAGGCGACCG 509
||||||| |||||| | || ||||||||||||||| |||||||||||||||||||||| |
Sbjct 457 AGTATCCAACCGGTCTGAGGACTAACCGAGCAACTCAAGCCGGTTATTGGAAGGCGACAG 516
Query 510 GGAAGGATAAAGAGATATACCGAGGCAAATCACTTGTTGGG-ATGAAGAAGACACTTGTT 568
|||||||||| || || | |||||| ||||| |||| |||| |||||||| |||||||||
Sbjct 517 GGAAGGATAAGGAAATCTTCCGAGGTAAATCGCTTG-TGGGTATGAAGAAAACACTTGTT 575
Query 569 TTCTATAGAGGAAGAGCTCCTAAAGGTCAGAAAACCAACTGGGTGATGCATGAGTACAGG 628
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||
Sbjct 576 TTCTATAGAGGAAGAGCTCCTAAAGGCCAGAAAACAAATTGGGTGATGCATGAGTATAGG 635
Query 629 CTTGAAGGAAAATTCTCTGCCCATAACTTGCCGAAAACCGCAAAGAATGAATGGGTGATA 688
|| || || ||| |||| || || |||||||| |||||||| ||||||||||||||||||
Sbjct 636 CTAGATGGGAAACTCTCAGCTCACAACTTGCCTAAAACCGCTAAGAATGAATGGGTGATA 695
Query 689 TGCAGGGTGTTCCA-AAAGAGTGCTGGAGGGAAGAAGATCCCGATTTCGAGTCT-AATCC 746
|||||||| || || ||| | |||||| || ||||||||||||||||||| || |||||
Sbjct 696 TGCAGGGTATTTCATAAA-ACTGCTGGTGGTAAGAAGATCCCGATTTCGAC-CTTAATCC 753
Query 747 GAATCGGTTCACT-CGGAACCGACTTTAACCCTTCGCTTTTGCC-CTCTTTAACCGATTC 804
|||||||||| | |||||||| | || | ||| || | |||||||||||||
Sbjct 754 GAATCGGTTCT-TACGGAACCGGGT----CCA---G-TTTA-CCAC-CTTTAACCGATTC 802
Query 805 TTCGCCTTACAACGATAAAACCAAAACAGAACCGGTCTACGTGCCCTGCTTCTCCAACCA 864
||| || ||||| || |||||||| || ||||| || |||||||||||||||||||||||
Sbjct 803 TTCACCATACAATGACAAAACCAAGACTGAACCAGTTTACGTGCCCTGCTTCTCCAACCA 862
Query 865 AACGGATCAAAACCA-AGGAACCACACTCAATTGCTTCAGCAGCCCTGTTC-TTAACTCG 922
|| | ||| | | |||||| | |||||||||||| |||| |||| | | ||| ||||
Sbjct 863 --CGC-TGAAA-CTAGAGGAACAATACTCAATTGCTTTAGCAACCCT-TCCCTTAGCTCG 917
Query 923 ATCCAAGCCGACATTTT-TCACAG--GATTCCACTCTATCAAACTCAGTCCCTCCAGGTT 979
||||| || | ||||| || ||| |||||||||||| ||| |||| || ||| | ||
Sbjct 918 GTCCAA-CC-AGATTTTCTC-CAGATGATTCCACTCTACCAACCTCAATCTCTCAACATT 974
Query 980 TCT--ATGAATCTACAGAG--CC---C-GGTTCTCACGCAAGAACACTCAGTTCTACATG 1031
| | | |||||||||||| || | |||||| ||||||| || |||||| |||| |
Sbjct 975 T-TGGA-GAATCTACAGAGTTCCAATCCGGTTCTTTCGCAAGACCAATCAGTTTTACAAG 1032
Query 1032 CTATGATCGAGAACAACAGAAGACA-AAGTCTCAAAACGAT-GAGTGTCTCACAAGAAAC 1089
| ||| | || ||||||||||| || || | ||||||| || ||| |||| || |||||
Sbjct 1033 CGATGGTGGAAAACAACAGAAGGCAGAACT-TCAAAAC-ATTGAGCATCTCGCAGGAAAC 1090
Query 1090 CGGAGTTTCAACTGACATGAACACTGATA-TCTCATCGGATTTTGAATTTGGTAAGAGAC 1148
|| |||||| || || | | | |||| | ||||||| |||||||||||| | || ||
Sbjct 1091 CGAAGTTTC----GA-AT-A-C-C-GATAAT-TCATCGGTTTTTGAATTTGGGAGGAAAC 1140
Query 1149 GGTTTGATTC-TCAAGAAGATCCGTCTTCCTCTACTGGACCGGTTGATCTTGAACCTTTC 1207
| |||||| | |||||||| ||| ||||||||| | || |||||||||||||||||||||
Sbjct 1141 GATTTGAT-CATCAAGAAGTTCCATCTTCCTCTTCCGGTCCGGTTGATCTTGAACCTTTC 1199
Query 1208 TGGAATTACTGAAGAT 1223
||||| ||||||||||
Sbjct 1200 TGGAACTACTGAAGAT 1215
> Ahg477665 jgi|Araly1|477665|fgenesh2_kg.3__366__AT3G04060.1
Length=1488
Score = 254 bits (137), Expect = 2e-66
Identities = 368/476 (77%), Gaps = 29/476 (6%)
Strand=Plus/Plus
Query 249 TGGATTTACCTCCTGGG-TTCAGGTTTCATCCAACAGATGAAGA-ACTCATAACTCACTA 306
||||||| ||||| ||| ||| ||||||| ||||| |||||||| | | |||||||||||
Sbjct 278 TGGATTTGCCTCCAGGGTTTC-GGTTTCACCCAACTGATGAAGAGA-TAATAACTCACTA 335
Query 307 TCTCCATA-AGAAGGTTCTT-GACA-CCAGCTTCTCAGCTAAAGCTATCGGTGAAGTTGA 363
|| || | |||||| |||| ||| || | ||| | || ||| || ||| ||| ||
Sbjct 336 CCT-CAAAGAGAAGG-TCTTCAACATCC-GATTCACCGCGGCAGCGATTGGTCAAGCCGA 392
Query 364 TTTAAACAA-ATCAGAGCCATGGGAGT-TACCATGGATGGCAAAAATGGGTGAGAAAGAA 421
| ||||| | | ||||||||||| | ||||| || ||||| ||||| ||||| ||
Sbjct 393 CCTCAACAAGAAC-GAGCCATGGGA-TCTACCAAAAATTGCAAAGATGGGAGAGAAGGAG 450
Query 422 TGGTATTTTTTCTGTGTGAGAGA-CAGAAAGTATCCCACCGGTTTAAGAACTAACCGAGC 480
| || |||||||| ||| || | | |||||||| ||||| | || || ||||| ||
Sbjct 451 TTTTACTTTTTCTGCCAGAGGGATC-GGAAGTATCCGACCGGGATGAGGACGAACCGTGC 509
Query 481 AACTGAAG-CCGGTTATTGGAAGGCGACCGGGAAGGATAAAGAGATATACCGAGGCAAA- 538
|| | | | ||||||||||||||||| |||||||| || ||||| | ||||||||
Sbjct 510 GACCG-TGTCTGGTTATTGGAAGGCGACTGGGAAGGACAAGGAGATCTTTAGAGGCAAAG 568
Query 539 --TCACTTGTTGGGATGAAGAAGACACTTGTTTTCTATAGAGGAAGAGCTCCTAAAGGTC 596
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 569 GTTGTCTTGTTGGGATGAAGAAAACACTTGTTTTCTATAGAGGAAGAGCTCCTAAAGGTG 628
Query 597 AGAAA-ACCAACTGGGTGATGCATGAGTA-CAGGCTTGAAGG-AAA-ATTCTCTGCCCAT 652
| ||| ||||| ||||| |||||||| || | | ||||| || ||| ||||| | | ||
Sbjct 629 A-AAAGACCAATTGGGTTATGCATGAATATC-GTCTTGATGGCAAATATTCT-TATC-AT 684
Query 653 AACTTGCCGAAAACCGCAAAGAATGAATGGGTGATATGCAGGGTGTTCCAAAAGAG 708
||| | || |||||||||| | ||||||||||| | || ||||| || || |||||
Sbjct 685 AACCTCCCCAAAACCGCAAGGGATGAATGGGTGGTGTGTAGGGTTTTTCACAAGAG 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5