BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61440.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496303 jgi|Araly1|496303|fgenesh2_kg.8__2119__AT5G61440.1 1308 0.0
> Ahg496303 jgi|Araly1|496303|fgenesh2_kg.8__2119__AT5G61440.1
Length=899
Score = 1308 bits (708), Expect = 0.0
Identities = 841/905 (93%), Gaps = 9/905 (1%)
Strand=Plus/Plus
Query 23 TTGATGTCGAGAGGTCAATAAAGTGATGAGCTTTTTGTGATTTTTTCCTCATTCAAAATC 82
||||| ||||||||||||||||||||| | |||||||||| ||||| |||||||||||||
Sbjct 1 TTGATATCGAGAGGTCAATAAAGTGATAAACTTTTTGTGA-TTTTT-CTCATTCAAAATC 58
Query 83 TTTGCACTTTTTCACTCTCCTTCAATCTCAAATTTCTGAGTCTTTCTTGGTTCACTTTCC 142
||||||| |||||| | |||| ||||||||||||||||||||||||||| ||| |||| |
Sbjct 59 TTTGCACATTTTCAATTTCCTCCAATCTCAAATTTCTGAGTCTTTCTTGCTTCGCTTT-C 117
Query 143 TT-AAACACGATTTGACATGGATGCAATTTCATCTCTTGGAACCAATTGTGTTCTTTCTG 201
|| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 118 TTAAAACAAGATTTGACATGGATGCAATTTCATCTCTTGGAACCAATCATGTTCTTTGTG 177
Query 202 GGGTTTCTCCATTTTCACAAGAGAATCAATCAAAATCGAAACTTTCTCCGTTTATGAGTC 261
|| ||||||||||||| || ||||||| ||||||||||||||||| |||| |||||||||
Sbjct 178 GGTTTTCTCCATTTTCTCAGGAGAATCCATCAAAATCGAAACTTTGTCCGGTTATGAGTC 237
Query 262 TTGATTTGAAGGAACATCCAATGGCTTCAGCAGATTTCACCAACCAAACCTTAACCGCTT 321
| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 238 TCGATTTGAAGGAACATCCCATGGTTTCAACAGATTTCACCAACCAAACCTTAACCGCTT 297
Query 322 TCTCTTCTTCCTCTGCGTCTCCTTTTCAGGCAAAGACATCATCGATTGGTATGAGTAGAG 381
||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 298 TCTCTTCTTCCTCTGTGACTCCTTTTCAGGCAAAGACATCATCAATTGGTAAGAGTAGAG 357
Query 382 GAATGAGATGGTGGGAGAAGTCAACAAATCACAACATGTTAGAGATTCAATCTGCCAATC 441
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 358 GAATGAGATGGTGGGAAAAGTCAACGAATCACAACATGTTAGAGATTCAATCTGCAAATC 417
Query 442 ATCTTGTTGACTCTTTGTTAAACGCTGGAGATAGATTGGTTGTTCTTGATTTCTACTCTC 501
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCTAGTTGACTCTTTGTTAAATGCTGGAGATAGATTGGTTGTTCTTGATTTCTACTCTC 477
Query 502 CTGGTTGTGGTGGCTGCAAATCTCTCCACCCAAAGATATGTCAATTGGCAGAAACAAACC 561
||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 478 CTGCTTGTGGTGGCTGCAAATCTCTCCACCCAAAGGTATGTCAATTGGCTGAATCAAACC 537
Query 562 CAAATGTGATGTTTCTGAAAGTGAATCAAGAAGAGCTTAGAACAATGTGTCATGGTCTAA 621
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 538 CAAATGTCATGTTTCTGAAAGTGAATCAAGAAGAGCTAAGAACAATGTGTCATGGTCTTA 597
Query 622 ACGTTCATGTGCTGCCTTTCTTTAAGTTCTATAGAGGAGCAGAGGGTAAAGTCTGTAGCT 681
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 ACGTTCATGTGCTTCCTTTCTTTAAGTTGTATAGAGGAGCAGAGGGTAAAGTCTGTAGCT 657
Query 682 TCAGCTGCACTATTGCAACTATCAATAAGTTCAAGAAAGCGTTGGATAAGCACGGTAGTG 741
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 658 TCAGCTGCACTATTGCAACCATCAATAAGTTCAAGAAAGCGTTGGATAAGCACGGTAGCG 717
Query 742 AAAGATGCAGCCTCGGGG-ATGCAAAGGGATTAGACGAGAAGGAACTCGCGGCTTTGGCA 800
|| |||||||||||||| | |||||||||||| ||||||| ||||| ||||||||||||
Sbjct 718 AACGATGCAGCCTCGGGCCA-GCAAAGGGATTAAACGAGAAAGAACTTGCGGCTTTGGCA 776
Query 801 TCGGTTGGTGAACTGAAAATGAATTCTTTAACAATGCATCAAGCTAGCAACATTGGTTAT 860
|||||||| |||||||||||||||||||||||| |||||||| |||||| | ||||||||
Sbjct 777 TCGGTTGGGGAACTGAAAATGAATTCTTTAACATTGCATCAAACTAGCATCGTTGGTTAT 836
Query 861 AAAACAGAGGAGCAATATCAAACGATGGTGTTATAAA-GAGATGACTTTTTTCATTAAGG 919
|||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||
Sbjct 837 AAAACAGAGGAGCAATATCAAACGATGGTGCTATAAAAGAGATGA-TTTTT-CATTAGGG 894
Query 920 TTCTT 924
|||||
Sbjct 895 TTCTT 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5