BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61450.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496304 jgi|Araly1|496304|fgenesh2_kg.8__2120__AT5G61450.1 2268 0.0
> Ahg496304 jgi|Araly1|496304|fgenesh2_kg.8__2120__AT5G61450.1
Length=1523
Score = 2268 bits (1228), Expect = 0.0
Identities = 1434/1530 (94%), Gaps = 27/1530 (2%)
Strand=Plus/Plus
Query 55 AATTT-GAAGATGAAGGACAGAGAGGAATCATCATCGTCTTCTTCTTCAATG---ACAAC 110
||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1 AATTTGGAAGATGAAGGACAGAGAGGAATCATCATCGTCTAGTTCTTCAATGACAACAAC 60
Query 111 -a-aa-aaa-aa--CTAATGGAATAATCAACAACGGCGAACACGAACCTCGAGATATCAA 164
| || ||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 AACAACAAACAACCCTAATGGAATCATCAACAACGGCGAACACGAACCTCGAGATATCAA 120
Query 165 CATCCGATCATTCTCTTCTGTTCCTTCTTCTCCTCGTAACGCTTCTTCCAAATACGATTT 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATCCGATCATTCTCTTCTGTTCCTTCTTCTCCTCGTAACGCTTCTTCCAAATACGATTT 180
Query 225 CGTCAAGGTCAAAGTATGGCTTGGAGACAACGCAGATCACTACTATGTTCTGTCTCGATT 284
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 CGTCAAGGTGAAGGTATGGCTTGGAGACAACGCCGATCACTACTATGTTCTGTCTCGCTT 240
Query 285 CTTAGTCTGTAGAATGTTAACTGTTACTAAGATCCCAAATCATGAAGCTATAAAGATTTC 344
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 CTTAGTTTGTAGAATGTTAACTGTTACTAAGATCCCAAATCATGAGGCTATAAAGATTTC 300
Query 345 TCTTGAACTCAAGAAGCTTCTAATTGACAACAGTCTTCTTGATGTCTCTCAGTCTGATTT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTTGAACTCAAGAAGCTTCTAATTGACAACAGTCTTCTTGATGTCTCTCAGTCTGATTT 360
Query 405 GGAAACCAATTTGTTTAAGCTAATGGAGCGACGTGGTTATGGAGAAGAGTACATTAATCG 464
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 361 GGAAACCAATTTGTTTAAGCTAATGGAGCGACGTGGTTATGGAGAAGAATACATAAATCG 420
Query 465 TTATAACATGATGACAAAATTTCATCATCAAAGAGTACCTCTTGTCATACTCGTTTGCGG 524
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TTACAACATGATGACAAAATTTCATCATCAAAGAGTACCTCTTGTCATACTTGTTTGCGG 480
Query 525 AACAGCTTGTGTTGGCAAGTCCACTATAGCTACACAACTTGCTCAGAGACTTAACTTGCC 584
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 481 AACAGCTTGTGTTGGCAAGTCCACAATTGCTACACAACTTGCTCAGAGACTAAACTTGCC 540
Query 585 AAACGTTTTACAAACAGACATGGTTTATGAGCTGCTTCGAACAGCAACTGATGCTCCGTT 644
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 TAACGTCTTACAAACAGATATGGTATATGAGCTGCTTCGAACAGCAACTGATGCTCCGTT 600
Query 645 GACATCAACCCCTGTATGGACTCGAGAATTCGGCTCATCAGAAGAGTTGATTACTGAATT 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACATCAACCCCTGTATGGACTCGAGAATTCGGCTCATCAGAAGAGTTGATTACTGAATT 660
Query 705 CTGTAGAGAATGCAGAATTGTTCGGAAAGGACTTGGTGGTGATTTGAAGAAAGCAATGAA 764
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 661 CTGTAGAGAATGCAGAATTGTTCGAAAAGGACTTGGTGGTGATTTAAAGAAAGCAATGAA 720
Query 765 AGATGGGAAACCCATTATAATTGAGGGAAGACATTTAGATCCAAGCATATACTTAATGAA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGATGGGAAACCCATTATAATTGAGGGAAGACATTTAGATCCAAGCATATACTTAATGAA 780
Query 825 TGATGAGAACAAAACTCCATCAAATGATCCCGAGAAGAGCAGCAGCGAAACAAACTCTTC 884
|||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 781 TGATGAGAACAAAACTCCATCAAATGATACCGAGAAGAACAGTAGCGAAACAAACTCTTC 840
Query 885 GAA-AGA-TCTAACCTCGGACAAAAATCCCGAGGCAAGTTCTTCAAACACGAAAGAAACC 942
|| ||| | ||||||||||||| |||| ||||||| | |||||||||| ||||||||||
Sbjct 841 -AAGAGAGT-TAACCTCGGACAAGAATCTCGAGGCAGGGTCTTCAAACATGAAAGAAACC 898
Query 943 GACAATAGTGCTGTGAAACCCCATTCTCATGAGGAAGCTGTGGCATCTGTAGAAGCGAAC 1002
||||||||||||||||||||| ||||||| || ||||| | |||||||||| |||| | |
Sbjct 899 GACAATAGTGCTGTGAAACCCGATTCTCAGGATGAAGCCGCGGCATCTGTAAAAGCTATC 958
Query 1003 AACCTCTCAGAAAAAGTTACACAATGTACAATCGACGCTGAAAGTTCAAAAGATGCTGAA 1062
|||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 959 GACCTATCAGAAAAAGTTACACAATGTAAAATCAACCCTGAAAGTTCAAAAGATGCTGAG 1018
Query 1063 AAGAAAAGCAAATCTGCAGATGGAAGTGGAAAGACGAAATCTGGCCCTGAACCAATAGTC 1122
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 AAGAAAAGCAAATCTGCAGATAGAAGTGGAAAGACGAAATCTGGCCCCGAACCAATAGTC 1078
Query 1123 ATATCTATTGTGTTAAAGATGTCTGAATTCGATCATAAGGCTTTGCTAGAGGAGTGGATC 1182
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATATCTATAGTTTTAAAGATGGCTGAATTCGATCATAAGGCTTTGCTAGAGGAGTGGATC 1138
Query 1183 TCTTCCCGTACATCTGGAGAGAAATATACCA-CTAAGGAGAAAGATAGACTAATAACAAA 1241
|||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 1139 TCTTCCCGTAAATCTGGAGAGAAATATAC-ATCTAAGGAGAAAGATAGACTAATTACAAA 1197
Query 1242 CCTAAAGACCATTGAAGACTACCTTTGTTCCTTTAATTCACAGGGGGTGACTGTTGTAAA 1301
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1198 CCTAAAGACCATTGAAGACTACCTTTGTTCCTTCAATTCACAGGGAGTGACTGTTGTAAA 1257
Query 1302 TATATCGGCCACCACATTCCCACAGACACTAGATTGGCTTCACAACTATCTTCTTCAGCG 1361
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 TATATCGGCCACCACATTCCCGCAGACACTAGATTCGCTTCACAACTATCTTCTTCAGCG 1317
Query 1362 TATTGAGGAAGGGATTCGATCATCAGAGAACGAGGCTCCGAAGTGAGACACATGCAAAAG 1421
|||||||||||||||||||||||||||||| ||||| || |||||| | |||||| |||
Sbjct 1318 TATTGAGGAAGGGATTCGATCATCAGAGAATGAGGCGCCAAAGTGA--CGCATGCAGAAG 1375
Query 1422 AAGTCTTAAGGAGGCTAAAGTCACCTTCTATA----CCTCAGAAACTATA-A-TAGTTAA 1475
||||||||||||||||| ||||| ||||| || |||||||||||||| | |||||||
Sbjct 1376 AAGTCTTAAGGAGGCTAGAGTCATCTTCTCTAAATGCCTCAGAAACTATATAATAGTTAA 1435
Query 1476 AACAATTGAGATTAGCGAG-TTATGTATTCTATAGTGTCAGCTATCACTCGTTATaaaaa 1534
|||||||||||||||| || || |||||||||||||||||||| ||||||| ||| ||||
Sbjct 1436 AACAATTGAGATTAGCCAGCTT-TGTATTCTATAGTGTCAGCTGTCACTCGCTATCAAAA 1494
Query 1535 aaCAAAGAGAATTTCTTGCATGAACTAATA 1564
| ||||||||| ||||||||||||||||||
Sbjct 1495 A-CAAAGAGAAGTTCTTGCATGAACTAATA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5