BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61450.1 Length=1614 Score E Sequences producing significant alignments: (Bits) Value Ahg496304 jgi|Araly1|496304|fgenesh2_kg.8__2120__AT5G61450.1 2268 0.0 > Ahg496304 jgi|Araly1|496304|fgenesh2_kg.8__2120__AT5G61450.1 Length=1523 Score = 2268 bits (1228), Expect = 0.0 Identities = 1434/1530 (94%), Gaps = 27/1530 (2%) Strand=Plus/Plus Query 55 AATTT-GAAGATGAAGGACAGAGAGGAATCATCATCGTCTTCTTCTTCAATG---ACAAC 110 ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1 AATTTGGAAGATGAAGGACAGAGAGGAATCATCATCGTCTAGTTCTTCAATGACAACAAC 60 Query 111 -a-aa-aaa-aa--CTAATGGAATAATCAACAACGGCGAACACGAACCTCGAGATATCAA 164 | || ||| || |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 AACAACAAACAACCCTAATGGAATCATCAACAACGGCGAACACGAACCTCGAGATATCAA 120 Query 165 CATCCGATCATTCTCTTCTGTTCCTTCTTCTCCTCGTAACGCTTCTTCCAAATACGATTT 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CATCCGATCATTCTCTTCTGTTCCTTCTTCTCCTCGTAACGCTTCTTCCAAATACGATTT 180 Query 225 CGTCAAGGTCAAAGTATGGCTTGGAGACAACGCAGATCACTACTATGTTCTGTCTCGATT 284 ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 181 CGTCAAGGTGAAGGTATGGCTTGGAGACAACGCCGATCACTACTATGTTCTGTCTCGCTT 240 Query 285 CTTAGTCTGTAGAATGTTAACTGTTACTAAGATCCCAAATCATGAAGCTATAAAGATTTC 344 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 241 CTTAGTTTGTAGAATGTTAACTGTTACTAAGATCCCAAATCATGAGGCTATAAAGATTTC 300 Query 345 TCTTGAACTCAAGAAGCTTCTAATTGACAACAGTCTTCTTGATGTCTCTCAGTCTGATTT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTTGAACTCAAGAAGCTTCTAATTGACAACAGTCTTCTTGATGTCTCTCAGTCTGATTT 360 Query 405 GGAAACCAATTTGTTTAAGCTAATGGAGCGACGTGGTTATGGAGAAGAGTACATTAATCG 464 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 361 GGAAACCAATTTGTTTAAGCTAATGGAGCGACGTGGTTATGGAGAAGAATACATAAATCG 420 Query 465 TTATAACATGATGACAAAATTTCATCATCAAAGAGTACCTCTTGTCATACTCGTTTGCGG 524 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 TTACAACATGATGACAAAATTTCATCATCAAAGAGTACCTCTTGTCATACTTGTTTGCGG 480 Query 525 AACAGCTTGTGTTGGCAAGTCCACTATAGCTACACAACTTGCTCAGAGACTTAACTTGCC 584 |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 481 AACAGCTTGTGTTGGCAAGTCCACAATTGCTACACAACTTGCTCAGAGACTAAACTTGCC 540 Query 585 AAACGTTTTACAAACAGACATGGTTTATGAGCTGCTTCGAACAGCAACTGATGCTCCGTT 644 ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 541 TAACGTCTTACAAACAGATATGGTATATGAGCTGCTTCGAACAGCAACTGATGCTCCGTT 600 Query 645 GACATCAACCCCTGTATGGACTCGAGAATTCGGCTCATCAGAAGAGTTGATTACTGAATT 704 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AACATCAACCCCTGTATGGACTCGAGAATTCGGCTCATCAGAAGAGTTGATTACTGAATT 660 Query 705 CTGTAGAGAATGCAGAATTGTTCGGAAAGGACTTGGTGGTGATTTGAAGAAAGCAATGAA 764 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 661 CTGTAGAGAATGCAGAATTGTTCGAAAAGGACTTGGTGGTGATTTAAAGAAAGCAATGAA 720 Query 765 AGATGGGAAACCCATTATAATTGAGGGAAGACATTTAGATCCAAGCATATACTTAATGAA 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGATGGGAAACCCATTATAATTGAGGGAAGACATTTAGATCCAAGCATATACTTAATGAA 780 Query 825 TGATGAGAACAAAACTCCATCAAATGATCCCGAGAAGAGCAGCAGCGAAACAAACTCTTC 884 |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| Sbjct 781 TGATGAGAACAAAACTCCATCAAATGATACCGAGAAGAACAGTAGCGAAACAAACTCTTC 840 Query 885 GAA-AGA-TCTAACCTCGGACAAAAATCCCGAGGCAAGTTCTTCAAACACGAAAGAAACC 942 || ||| | ||||||||||||| |||| ||||||| | |||||||||| |||||||||| Sbjct 841 -AAGAGAGT-TAACCTCGGACAAGAATCTCGAGGCAGGGTCTTCAAACATGAAAGAAACC 898 Query 943 GACAATAGTGCTGTGAAACCCCATTCTCATGAGGAAGCTGTGGCATCTGTAGAAGCGAAC 1002 ||||||||||||||||||||| ||||||| || ||||| | |||||||||| |||| | | Sbjct 899 GACAATAGTGCTGTGAAACCCGATTCTCAGGATGAAGCCGCGGCATCTGTAAAAGCTATC 958 Query 1003 AACCTCTCAGAAAAAGTTACACAATGTACAATCGACGCTGAAAGTTCAAAAGATGCTGAA 1062 |||| |||||||||||||||||||||| |||| || |||||||||||||||||||||| Sbjct 959 GACCTATCAGAAAAAGTTACACAATGTAAAATCAACCCTGAAAGTTCAAAAGATGCTGAG 1018 Query 1063 AAGAAAAGCAAATCTGCAGATGGAAGTGGAAAGACGAAATCTGGCCCTGAACCAATAGTC 1122 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1019 AAGAAAAGCAAATCTGCAGATAGAAGTGGAAAGACGAAATCTGGCCCCGAACCAATAGTC 1078 Query 1123 ATATCTATTGTGTTAAAGATGTCTGAATTCGATCATAAGGCTTTGCTAGAGGAGTGGATC 1182 |||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1079 ATATCTATAGTTTTAAAGATGGCTGAATTCGATCATAAGGCTTTGCTAGAGGAGTGGATC 1138 Query 1183 TCTTCCCGTACATCTGGAGAGAAATATACCA-CTAAGGAGAAAGATAGACTAATAACAAA 1241 |||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||| Sbjct 1139 TCTTCCCGTAAATCTGGAGAGAAATATAC-ATCTAAGGAGAAAGATAGACTAATTACAAA 1197 Query 1242 CCTAAAGACCATTGAAGACTACCTTTGTTCCTTTAATTCACAGGGGGTGACTGTTGTAAA 1301 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1198 CCTAAAGACCATTGAAGACTACCTTTGTTCCTTCAATTCACAGGGAGTGACTGTTGTAAA 1257 Query 1302 TATATCGGCCACCACATTCCCACAGACACTAGATTGGCTTCACAACTATCTTCTTCAGCG 1361 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 1258 TATATCGGCCACCACATTCCCGCAGACACTAGATTCGCTTCACAACTATCTTCTTCAGCG 1317 Query 1362 TATTGAGGAAGGGATTCGATCATCAGAGAACGAGGCTCCGAAGTGAGACACATGCAAAAG 1421 |||||||||||||||||||||||||||||| ||||| || |||||| | |||||| ||| Sbjct 1318 TATTGAGGAAGGGATTCGATCATCAGAGAATGAGGCGCCAAAGTGA--CGCATGCAGAAG 1375 Query 1422 AAGTCTTAAGGAGGCTAAAGTCACCTTCTATA----CCTCAGAAACTATA-A-TAGTTAA 1475 ||||||||||||||||| ||||| ||||| || |||||||||||||| | ||||||| Sbjct 1376 AAGTCTTAAGGAGGCTAGAGTCATCTTCTCTAAATGCCTCAGAAACTATATAATAGTTAA 1435 Query 1476 AACAATTGAGATTAGCGAG-TTATGTATTCTATAGTGTCAGCTATCACTCGTTATaaaaa 1534 |||||||||||||||| || || |||||||||||||||||||| ||||||| ||| |||| Sbjct 1436 AACAATTGAGATTAGCCAGCTT-TGTATTCTATAGTGTCAGCTGTCACTCGCTATCAAAA 1494 Query 1535 aaCAAAGAGAATTTCTTGCATGAACTAATA 1564 | ||||||||| |||||||||||||||||| Sbjct 1495 A-CAAAGAGAAGTTCTTGCATGAACTAATA 1523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60487309060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5