BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61455.1
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950479 jgi|Araly1|950479|scaffold_802366.1 193 2e-48
Ahg939397 jgi|Araly1|939397|scaffold_503588.1 178 6e-44
Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435 148 5e-35
Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693 135 4e-31
Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 130 2e-29
> Ahg950479 jgi|Araly1|950479|scaffold_802366.1
Length=211
Score = 193 bits (104), Expect = 2e-48
Identities = 158/183 (86%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 413 AGTCCCACATCGCTAACAATTTAAGAGGT-GAAGACAAG-ACG-AGTAGTATAAATAACG 469
|||||||||||| |||| |||||| || || ||| | | |||||||| ||||||
Sbjct 179 AGTCCCACATCGATAAC---TTAAGATGTCTTTGAGAAGTAAGTAGTAGTATTAATAACA 123
Query 470 AGGCCACGGCCA-CGAACAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 528
||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGGCC-TTGTGATCAAACAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 64
Query 529 TATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCATCGGCCCACACGATATTAACT 588
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 63 TATCTGTTCTTATCAGTTTAATATCTGGTATGTGGGTCATTGGCCCACACGATATTAACT 4
Query 589 CTA 591
|||
Sbjct 3 CTA 1
> Ahg939397 jgi|Araly1|939397|scaffold_503588.1
Length=376
Score = 178 bits (96), Expect = 6e-44
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 490 TCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAA 43
Query 550 TATCTGATATGTGGGCCATCGGCCCACACGATATTAACTCTA 591
||||||||||||||| |||||| |||||||||||||||||||
Sbjct 42 TATCTGATATGTGGGTCATCGGTCCACACGATATTAACTCTA 1
> Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435
Length=255
Score = 148 bits (80), Expect = 5e-35
Identities = 82/83 (99%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 486 CAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGT 545
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 CAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGT 24
Query 546 TTAATATCTGATATGTGGGCCAT 568
|||||||||||||||||||||||
Sbjct 23 TTAATATCTGATATGTGGGCCAT 1
> Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693
Length=552
Score = 135 bits (73), Expect = 4e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 496 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 14
Query 556 ATATGTGGGCCAT 568
|||||||||||||
Sbjct 13 ATATGTGGGCCAT 1
> Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220
Length=420
Score = 130 bits (70), Expect = 2e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 496 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 73 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATTTG 14
Query 556 ATATGTGGGCCAT 568
|||||||||||||
Sbjct 13 ATATGTGGGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5