BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61455.1 Length=831 Score E Sequences producing significant alignments: (Bits) Value Ahg950479 jgi|Araly1|950479|scaffold_802366.1 193 2e-48 Ahg939397 jgi|Araly1|939397|scaffold_503588.1 178 6e-44 Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435 148 5e-35 Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693 135 4e-31 Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 130 2e-29 > Ahg950479 jgi|Araly1|950479|scaffold_802366.1 Length=211 Score = 193 bits (104), Expect = 2e-48 Identities = 158/183 (86%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 413 AGTCCCACATCGCTAACAATTTAAGAGGT-GAAGACAAG-ACG-AGTAGTATAAATAACG 469 |||||||||||| |||| |||||| || || ||| | | |||||||| |||||| Sbjct 179 AGTCCCACATCGATAAC---TTAAGATGTCTTTGAGAAGTAAGTAGTAGTATTAATAACA 123 Query 470 AGGCCACGGCCA-CGAACAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 528 ||||| | | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 AGGCC-TTGTGATCAAACAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAG 64 Query 529 TATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCATCGGCCCACACGATATTAACT 588 ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| Sbjct 63 TATCTGTTCTTATCAGTTTAATATCTGGTATGTGGGTCATTGGCCCACACGATATTAACT 4 Query 589 CTA 591 ||| Sbjct 3 CTA 1 > Ahg939397 jgi|Araly1|939397|scaffold_503588.1 Length=376 Score = 178 bits (96), Expect = 6e-44 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 490 TCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAA 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 TCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAA 43 Query 550 TATCTGATATGTGGGCCATCGGCCCACACGATATTAACTCTA 591 ||||||||||||||| |||||| ||||||||||||||||||| Sbjct 42 TATCTGATATGTGGGTCATCGGTCCACACGATATTAACTCTA 1 > Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435 Length=255 Score = 148 bits (80), Expect = 5e-35 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 486 CAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGT 545 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83 CAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGT 24 Query 546 TTAATATCTGATATGTGGGCCAT 568 ||||||||||||||||||||||| Sbjct 23 TTAATATCTGATATGTGGGCCAT 1 > Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693 Length=552 Score = 135 bits (73), Expect = 4e-31 Identities = 73/73 (100%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 496 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 14 Query 556 ATATGTGGGCCAT 568 ||||||||||||| Sbjct 13 ATATGTGGGCCAT 1 > Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 Length=420 Score = 130 bits (70), Expect = 2e-29 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 496 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 555 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 73 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATTTG 14 Query 556 ATATGTGGGCCAT 568 ||||||||||||| Sbjct 13 ATATGTGGGCCAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30727071102 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5