BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61460.1
Length=3646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496305 jgi|Araly1|496305|fgenesh2_kg.8__2121__AT5G61460.1 5705 0.0
Ahg487601 jgi|Araly1|487601|fgenesh2_kg.6__735__AT5G07660.1 2453 0.0
> Ahg496305 jgi|Araly1|496305|fgenesh2_kg.8__2121__AT5G61460.1
Length=3498
Score = 5705 bits (3089), Expect = 0.0
Identities = 3374/3511 (96%), Gaps = 22/3511 (1%)
Strand=Plus/Plus
Query 4 TCTCTTTCCCGCCCTAAGCAGTCGCATCAATGGAACTTGCTCTATTCTAATTTGTTTCAA 63
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1 TCTCTTTCCCGCCCTAAGCAGTCGCATCAATGGAACTTGATCTTTTCTAATTTGTTTCAG 60
Query 64 CCGAGTGAGAGAAGAAACCCTAGAACGCGAAAAGCCATGGTAAAATCTGGTGCTCGAGCC 123
||||||||||| | |||||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct 61 CCGAGTGAGAG-A-AAACCCTAGAACGCGATAAGCCATGGCAAAATCTGGGGCTCGAGCC 118
Query 124 AGTGATTCATTCATCAAACAACGTTCTGGGTCGGGTTCGATTCTGAGGATCAAAGTTGAG 183
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 119 AGTGATTCCTTCATCAAACAGCGTTCTGGGTCGGGTACGATTCTGAGGATCAAAGTTGAG 178
Query 184 AATTTCATGTGCCATAGTAATCTCCAGATTGAGTTTGGCGAGTGGGTTAATTTCATCACC 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 AATTTCATGTGCCATAGTAATCTCCAGATTGAATTTGGCGAGTGGGTTAATTTCATCACC 238
Query 244 GGCCAAAACGGAAGTGGTAAGAGTGCAATACTGACTGCACTATGTGTTGCATTTGGATGT 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 GGCCAAAACGGAAGTGGTAAGAGTGCAATACTGACTGCTCTATGTGTTGCATTTGGATGT 298
Query 304 CGAGCGAGAGGGACTCAGCGTGCTGCCACTCTAAAGGATTTCATTAAAACTGGATGCAGC 363
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGAGCCAGAGGCACTCAGCGCGCTGCCACTCTAAAGGATTTCATTAAAACTGGATGCAGC 358
Query 364 TATGCCGTTGTCCAAGTAGAAATGAAAAACAGTGGAGAGGATGCTTTTAAGCCTGAAATT 423
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 TATGCCGTTGTCCATGTAGAAATGAAAAACAATGGAGAGGATGCTTTTAAGCCTGAAATT 418
Query 424 TATGGTGGCGTTATAATTATCGAACGCAGGATAACTGAGTCTGCTACAGCTACTGTTCTC 483
||||||| ||||||||||||||||||||||||||||| ||| ||||| |||| ||||||
Sbjct 419 TATGGTGAAGTTATAATTATCGAACGCAGGATAACTGATTCTACTACATCTACCGTTCTC 478
Query 484 AAAGATTATCTAGGaaaaaaaGTAAGTAACAAAAGGGACGAGCTACGGGAACTTGTTGAA 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 AAAGATTATCTAGGAAAAAAAGTAAGTAACAAAAGGGAGGAGCTACGGGAACTTGTTGAA 538
Query 544 CATTTTAATATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAG 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 CATTTTAATATTGATGTTGAAAACCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAG 598
Query 604 TTCTTACATTCTGGAAATGACAAAGATAAATTCAAGTTCTTTTTTAAGGCAACCCTTCTT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTCTTACATTCTGGAAATGACAAAGATAAATTCAAGTTCTTTTTTAAGGCAACCCTTCTT 658
Query 664 CAGCAAGTCAATGATCTTCTCCAAAGTATCTACGAACACTTGACAAAA-GCAACTGCTAT 722
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 659 CAGCAAGTCAATGATCTTCTCCAAAGTATCTACGAACACTTGA-AAAATGCAACTGCTAT 717
Query 723 AGTCGATGAATTGGAGAACACAATTAAACCAATAGAAAAGGAGATCAGTGAGTTGCGTGG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTCGATGAATTGGAGAACACAATTAAACCAATAGAAAAGGAGATCAGTGAGTTGCGTGG 777
Query 783 AAAGATAAAGAATATGGAACAAGTTGAAGAAATAGCTCAAAGGTTGCAGCAGTTGAAGAA 842
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 778 AAAGATAAAGAATATGGAACAAGTTGAAGAAATAGCTCAAAAGTTGCAGCAGTTGAAGAA 837
Query 843 GAAACTGGCTTGGTCATGGGTATATGATGTGGATAGGCAGCTCCAGGAACAGACTGAGAA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAACTGGCTTGGTCATGGGTATATGATGTGGATAGGCAGCTCCAGGAACAGACTGAGAA 897
Query 903 GATTGTGAAGCTTAAAGAACGTATACCGACTTGCCAAGCTAAAATAGATTGGGAACTGGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GATTGTGAAGCTTAAAGAACGTATACCGACTTGCCAAGCTAAAATAGATTGGGAACTGGG 957
Query 963 AAAAGTGGAATCATTAAGGGATACGTTGACCAAGAAGAAAGCTCAAGTTGCGTGTCTGAT 1022
||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 958 TAAAGTAGAATCGTTAAGGGATACATTGACCAAGAAGAAAGCTCAAGTTGCATGTCTGAT 1017
Query 1023 GGATGAATCAACTGCAATGAAGAGAGAGATAGAGAGTTTTCACCAATCAGCCAAGACGGC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 GGATGAATCAACTGCAATGAAGAGAGAGATAGAGAGTTTTCACCAATCAGCGAAGACGGC 1077
Query 1083 TGTACGAGAAAAAATTGCTCTACAAGAAGAATTCAATCATAAGTGCAATTATGTTCAAAA 1142
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGTACGAGAAAAGATTGCTCTACAAGAAGAATTCAATCATAAGTGCAATTATGTTCAAAA 1137
Query 1143 GATTAAGGATCGTGTTAGAAGGCTTGAACGGCAAGTTGGAGATATCAATGAACAGACAAT 1202
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 GATTAAGGATCGTGTTAGAAGGCTTGAACGGCAGGTTGGAGATATCAATGAACAGACAAT 1197
Query 1203 GAAGAACACACAGGCTGAACAATCTGAAATCGAGGAGAAACTAAAATATTTGGAGCAGGA 1262
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GAAAAACACACAGGCTGAACAATCTGAAATCGAGGAGAAACTAAAATATTTGGAGCAGGA 1257
Query 1263 GGTTGAGAAAGTTGAAACATTGCGTTCCAGATTGAAAGAGGAAGAGAACTGCTT-CTTGG 1321
|||||||||||||||||| |||| || ||||||||||||||||||||||||||| | |||
Sbjct 1258 GGTTGAGAAAGTTGAAACCTTGCTTTTCAGATTGAAAGAGGAAGAGAACTGCTTAC-TGG 1316
Query 1322 AAAAAGCGTTTGAAGGGAGGAAAAAGATGGAACACATCGAGGATATGATTAAAAACCATC 1381
||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1317 AAAAAGCGTTTGATGGGAGGAAAGAGATAGAACACATCGAGGATATGATTAAAAACCATC 1376
Query 1382 AAAAGAGGCAAAGATTCATAACCTCGAACATTAATGATCTGAAGAAACATCAAACAAATA 1441
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1377 AAAAGAGGCAAAGATTCGTAACGTCGAACATTAATGATCTGAAGAAACATCAAACAAACA 1436
Query 1442 AGGTTACTGCATTTGGAGGGGACAGAGTCATTAATCTTCTGCAGGCTATTGAGAGAAATC 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGGTTACTGCATTTGGAGGGGACAGAGTCATTAATCTTCTGCAGGCTATTGAGAGAAATC 1496
Query 1502 ATCGTAGATTTAGAAAACCACCAATTGGTCCTATTGGCTCCCATGTGACTTTAGTCAATG 1561
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATCGTAGATTCAGAAAACCACCAATTGGTCCTATTGGCTCCCATGTGACTTTAGTCAATG 1556
Query 1562 GCAATAAATGGGCTTCTTCAGTTGAACAAGCTCTTGGAACCCTATTAAATGCCTTCATTG 1621
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1557 GCAATAAATGGGCTTCTACAGTTGAACAAGCTCTTGGAAACCTATTAAATGCCTTCATTG 1616
Query 1622 TGACTGATCACAAAGATTCTCTCACTCTAAGAGGCTGTGCGAATGAAGCTAACTATAGAA 1681
|||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||
Sbjct 1617 TGACTGATCATAAAGATTCGCTCACTCTAAGAGGCTGTGCAAATGAAGCCAATTATAGAA 1676
Query 1682 ATCTTAAGATTATCATCTATGACTTTTCGAGACCAAGGTTAAATATACCAAGGCACATGG 1741
| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1677 ACCTCAAGATTATCATCTATGACTTTTCGAGACCAAGGTTGAATATACCAAGGCACATGA 1736
Query 1742 TGCCTCAGACAGAACACCCAACTATATTCTCTGTCATAGACTCTGATAACCCAACCGTCC 1801
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1737 TTCCTCAGACAGAACACCCAACTATTTTCTCTGTCATACACTCTGATAACCCAACCGTCC 1796
Query 1802 TTAATGTCTTGGTGGATCAGAGTGGTGTTGAGAGGCAAGTGCTTGCAGAAAATTATGAGG 1861
||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1797 TTAATGTCTTGGTGGATGTGAGTGGTGTTGAGAGGCAAGTGCTTGCAGAGAACTATGAGG 1856
Query 1862 AGGGAAAGGCGGTTGCATTTGGGAAAAGGCTCTCAAATCTGAAGGAGGTTTACACTTTAG 1921
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1857 TGGGAAAGGCGGTTGCATTTGGGAAAAGGCTCTCAAATCTGAAGGATGTTTACACTTTAG 1916
Query 1922 ACGGATACAAAATGTTTTTTCGTGGGCCAGTTCAGACTACTCTTCCTCCTCTTTCTCGTA 1981
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1917 ACGGATACCGAATGTTTTTTCGTGGGCCAGTTCAGACTACTCTTCCTCCTCTTCCTCGTA 1976
Query 1982 GACCTTCGCGACTCTGTGCTTCTTTTGATGACCAGATCAAGGATCTTGAAATAGAGGCTT 2041
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1977 GATCTTCGCGACTCTGTGCTTCTTTTGATGACCAGATCAAGGATCTTGAAATAGAAGCCT 2036
Query 2042 CAAAAGAACAAAACGAGATAAATCAATGCATGAGACGTAAGAGGGAGGCAGAGGAGAATC 2101
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2037 CAAAAGAACAAAACGAGATAAATCAATGCATTAGACGTAAGAGAGAGGCAGAGGAGAATC 2096
Query 2102 TTGAGGAACTTGAGTTGAAAGTGCGCCA-ACTGAAGAAGCACCGCAGCCAAGCAGAGAAG 2160
| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2097 TCGAGGAACTTGAGTCGAAAGTGCG-CACACTGAAGAAGCACCGCAGCCAAGCAGAGAAG 2155
Query 2161 GTTTTGACGACAAAGGAACTTGAGATGCACGATTTGAAGAATACAGTCGCTGCTGAGATC 2220
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2156 GTTTTGACGACAAAGGAACTTGAGATGCAGGATTTGAAGAATACAGTCGCTGCTGAGACC 2215
Query 2221 GAAGCATTACCTTCTTCAAGTGTTAATGAGCTTCAACGTGAAATCATGAAAGACCTAGAA 2280
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2216 GAAGCATCACCTTCTTCAAGTGTTAATGAGCTTCAACTTGAAATCATGAAAGACCGAGAA 2275
Query 2281 GAGATAGATGAGAAAGAAGCTTTCCTTGAGAAGCTCCAAAACTGCTTGAAAGAAGCTGAG 2340
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2276 GAGATAGATGAGAAAGAAGCTTTGCTTGAGAAGCTCCAAAACTGCTTGAAAGAAGCTGAG 2335
Query 2341 CTAAAGGCTAATAAACTTACAGCTTTATTTGAGAACATGCGTGAGTCAGCCAAGGGTGAA 2400
|| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 2336 CTTAAGGCTCATAAACTTACAGCTTCATTTGAGAACTTGCGTGAGTCAGCCAAGGGTGAA 2395
Query 2401 ATTGATGCCTTTGAGGAAGCAGAGAATGAGCTAAAGAAGATTGAGAAAGACCTTCAGTCT 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 ATTGATGCCTTTGAGGAAGCAGAGAATGAGCTAAAGAAGATTGAGAAAGACCTTCAGTCT 2455
Query 2461 GCCGAAGCGGAGAAAATCCATTACGAGAACATAATGAAAAACAAGGTCCTACCTGATATT 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2456 GCCGAAGCGGAGAAAATCCATTACGAGAACATAATGAAAAACAAGGTCCTACCTGATATT 2515
Query 2521 AAGAATGCTGAGGCTAACTACGAGGAGCTTAAAAATAAGCGAAAGGAAAGTGACCAGAAG 2580
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2516 AAGAATGCTGAGGCTAACTACGAGGAGCTTAAAAATAAGCGGAAGGAAAGTGACCAGAAG 2575
Query 2581 GCCTCTGAAATTTGTCCTGAGAGTGAGATAGAATCTTTGGGTCCCTGGGATGGGAGTACT 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 GCCTCTGAAATTTGTCCTGAGAGTGAGATAGAATCTTTGGGTCCCTGGGATGGGAGTACT 2635
Query 2641 CCTGAGCAACTCAGTGCTCAGATTACCAGAATGAATCAGAGACTTCATCGAGAGAATCAG 2700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 CCTGAGCAACTCAGTGCTCAGATTACCAGAATGAATCAGAGACTTCATCGAGAGAATCAG 2695
Query 2701 CAGTTTTCTGAATCAATTGATGACCTTAGGATGATGTATGAGAGCCTAGAACGAAAGATT 2760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2696 CAGTTTTCTGAATCAATTGATGACCTTAGGATGATGTATGAGAGCCTAGAACGAAAGATT 2755
Query 2761 GCAAAGAAGCGCAAATCCTATCAAGACCATCGAGAAAAACTCATGGCCTGCAAAAATGCT 2820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2756 GCAAAGAAGCGCAAATCCTATCAAGACCATCGAGAAAAACTCATGGCCTGCAAAAATGCT 2815
Query 2821 CTAGATTCACGGTGGGCCAAATTTCAAAGAAATGCATCTCTTCTTCGGCGCCAGTTAACA 2880
|||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2816 TTAGATTCACGTTGGGGCAAGTTTCAAAGAAATGCATCTCTTCTTCGGCGCCAGTTAACA 2875
Query 2881 TGGCAATTCAACGCTCACTTGGGAAAGAAAGGTATCAGCGGACACATCAAAGTCAGTTAT 2940
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2876 TGGCAATTCAACTCTCACTTGGGAAAGAAAGGTATCAGCGGACACATCAAAGTCAGTTAT 2935
Query 2941 GAAAATAAAACTTTGTCCATAGAGGTTAAAATGCCTCAAGACGCAACAAGCAATGTCGTT 3000
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 2936 GAAGATAAAACTTTGTCCATAGAGGTTAAGATGCCTCAAGACGCAACAAGCAATGCCGTT 2995
Query 3001 CGAGACACCAAAGGTCTTTCAGGCGGAGAACGTTCTTTCTCAACTTTATGTTTTGCACTA 3060
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 2996 CGAGACACCAAAGGTCTTTCAGGCGGAGAACGTTCTTTCTCGACTTTATGTTTTGCATTA 3055
Query 3061 GCTCTTCACGAGATGACAGAAGCCCCGTTTCGAGCAATGGATGAGTTTGATGTGTTTATG 3120
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 3056 GCTCTTCACGAAATGACGGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATG 3115
Query 3121 GATGCAGTCAGTCGGAAAATTAGCTTGGACGCACTGGTGGATTTTGCAATTGGAGAAGGA 3180
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 3116 GATGCAGTCAGCCGGAAAATCAGCTTGGACGCACTGGTGGATTTTGCAATTGGACAAGGA 3175
Query 3181 TCGCAGTGGATGTTCATCACCCCTCATGATATCAGCATGGTGAAGTCGCACGAGAGGATA 3240
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3176 TCGCAGTGGATGTTCATTACCCCTCATGATATCAGCATGGTCAAGTCGCACGAGAGGATA 3235
Query 3241 AAGAAACAGCAAATGGCTGCTCCTCGTTCTTGAAAACaaaaaaaaaCTCTCCTTGTATAG 3300
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 3236 AAGAAGCAGCAAATGGCTGCTCCTCGTTCTTGAAAACAAAATAAC-CTCTCCTTGTATAG 3294
Query 3301 CTCCATAAAGGGCATCCTCGGCTTTGAGTCAATACTACGACGAGCTGATGGGAAGTTTGA 3360
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 3295 CTCCATAAAGGGCATCCTCGGCTTAGAGTCAATACTACAACGAGCTGATGGGAAGTTAGA 3354
Query 3361 GAAGAGCTTTGTCATCCATGGTC-ATGGTGTATTGATTTGAATTTACAGGTGCTGAGTGA 3419
|||||||||||| || | || ||||||||||||||||| ||||||||||||||||||
Sbjct 3355 GAAGAGCTTTGTG--CC--G-TCCATGGTGTATTGATTTGATTTTACAGGTGCTGAGTGA 3409
Query 3420 GACCCtttttt----gttttctctcatttctttttATGACATTTA-TATATTGTCAAACT 3474
||||||||||| |||||||||||||||| |||||||| ||| | ||||||||||||
Sbjct 3410 GACCCTTTTTTTTTTGTTTTCTCTCATTTCTGTTTATGACGGTTAGT-TATTGTCAAACT 3468
Query 3475 TTGATTTTAAAACTGTATTATATATCATTTT 3505
|||||| |||| |||||||||||||||||||
Sbjct 3469 TTGATTATAAA-CTGTATTATATATCATTTT 3498
> Ahg487601 jgi|Araly1|487601|fgenesh2_kg.6__735__AT5G07660.1
Length=3192
Score = 2453 bits (1328), Expect = 0.0
Identities = 2583/3175 (81%), Gaps = 142/3175 (4%)
Strand=Plus/Plus
Query 179 TTGAGAATTTCATGTGCCATAGTAATCTCCAGATTGAGTTTGGCGAGTGGGTTAATTTCA 238
||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||
Sbjct 80 TTGAGAATTTCATGTGCCACAGTAATCTCGAGATTGAGTTTGGCGATTGGGTCAATTTCA 139
Query 239 TCACCGGCCAAAACGGAAGTGGTAAGAGTGCAATACTGACTGCACTATGTGTTGCATTTG 298
|||| |||||||||||||||||||||||||| || ||||||| ||||||||||| ||||
Sbjct 140 TCACTGGCCAAAACGGAAGTGGTAAGAGTGCGATTTTGACTGCTCTATGTGTTGCCTTTG 199
Query 299 GATGTCGAGCGAGAGGG-ACTCAGCGTGCTGCCACTCTAAAGGATTTCATTAAAACTGGA 357
|||||||||| || ||| |||||||| || || || ||||| ||||||||||||| ||||
Sbjct 200 GATGTCGAGCCAG-GGGAACTCAGCGCGCCGCTACGCTAAAAGATTTCATTAAAAATGGA 258
Query 358 TGCAGCTATGCCGTTGTCCAAGTAGAAATGAAAAA-CAGTGGAGAGGATGCTTTTAAGCC 416
||||| |||||| |||| || || ||| ||||||| || ||||||||||||||||||||
Sbjct 259 TGCAGTTATGCCCTTGTTCATGTCGAACTGAAAAACCA-AGGAGAGGATGCTTTTAAGCC 317
Query 417 TGAAATTTATGGTGGCGTTATAATTATCGAACGCAGGATAACTGAGTCTGCTAC-AG-CT 474
|||||| ||||||| | | ||||| |||||||||||| |||| | | |||| || |
Sbjct 318 TGAAATATATGGTGATACTCTGATTATTGAACGCAGGATATCTGA-T-T-CTACTAGTTT 374
Query 475 -ACTGTTCTCAAAGATTATCTAGGaa-aaaaaGTAAGTAACAAAAGGGACGAGCTACGGG 532
|| |||||||| ||| ||| ||||| ||||| || || | ||| || |||||||||
Sbjct 375 AACGGTTCTCAAGGATCATCAAGGAAGAAAAA-TATCTAGCCGAAGAGAGGAGCTACGGC 433
Query 533 AACTTGTTGAACATTTTAATATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACA 592
||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 434 AACTTGTTGAACATTATAATATTGATGTTGAGAATCCCTGTGTGATAATGAGTCAAGACA 493
Query 593 AAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGTTCTTTTTTAAGG 652
| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
Sbjct 494 AGAGCAGGGAGTTCTTACATTCTGGAAACGACAAAGACAAATTCAAGTTCTTTTATAAAG 553
Query 653 CAACCCTTCTTCAGCAAGTCAATGATCTTCTCCAAAGTATCTACGAAC--ACTTGACAA- 709
|||||||||| ||||||||| |||||||||| |||||||| | | || | |||| ||
Sbjct 554 CAACCCTTCTCCAGCAAGTCGATGATCTTCTTCAAAGTAT-T-GGCACTAAGTTGA-AAT 610
Query 710 AAGCAACTGCT-ATAGTCGATGA-ATTGGAGAACACAATTAAACCAATAGAAAAGGAGAT 767
|||| |||| || | ||||| | ||||||| || || ||||||||| ||||||||||
Sbjct 611 CTGCAAATGCTCTTA-TGGATGAGA-TGGAGAAGACCATAAAACCAATACAAAAGGAGAT 668
Query 768 CAGTGAGTTGCGTGGAAAGATAAAGAATATGGAACAAGTTGAAGAAATAGCTCAA-AGGT 826
|||||| |||| || ||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 669 CAGTGAATTGCTTGAAAAGATAAAGAATATGGAACATGTTGAAGAAATAACTCAACAGGT 728
Query 827 TGCAGCAGTTGAAGAAGAAACTGGCTTGGTCATGGGTATATGATGTGGATAGGCAGCTCC 886
| | ||| ||||| || ||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 729 T-CTGCATTTGAAAAATAAACTAGCTTGGTCATGGGTATATGATGTGAATAGGCAGCT-C 786
Query 887 A-GGAACAGACTGAGAAGATTGTGAAGCTTAAAGAACGTA-TACCGACTTGCCAAGCTAA 944
| ||| |||| ||||||||| ||||| || | |||||| | | || ||||| ||| |||
Sbjct 787 ATGGAGCAGAATGAGAAGATCGTGAAACTCAGAGAACG-AGTGCCTACTTGTCAAAATAA 845
Query 945 AATAGATTGGGAACTGGGAAAAGTGGAATCATTAAGGGATACG-TTGACCAAGAAGAAAG 1003
||| ||| || ||||||| | ||||| || ||||||| || | |||||| |||||||||
Sbjct 846 AATTGATCGGAAACTGGGTGAGGTGGAGTCTTTAAGGG-TAAGCTTGACCGAGAAGAAAG 904
Query 1004 CTCAAGTTGCGTGTCTGATGGATGAATCAACTGCAATGAAGAGAGAGATAGAGAGTTTTC 1063
|||||||||| || ||||| |||||||||||||| |||||||||||| ||||| |||| |
Sbjct 905 CTCAAGTTGCCTGCCTGATAGATGAATCAACTGCGATGAAGAGAGAGCTAGAGTGTTTGC 964
Query 1064 ACCAATCAGCCAAGACGGCTG-TACGAGAAAAAATTGCTCTACAAGAAGAATTCAATCAT 1122
|||||| |||| ||||| || |||| || |||||| || ||||||||| | |||||
Sbjct 965 GGCAATCAATGAAGAAGGCTGCTA-GAGAGAAGATTGCTTTAGAAGAAGAATACCATCAT 1023
Query 1123 AAGTGCAATTATGTTCAAAAGATTAAGGATCGTGTTAGAAGGCTTGAACGGCAAG-TTGG 1181
||||||||| | |||| |||||||||||||||||||| ||||||||||| | || ||||
Sbjct 1024 AAGTGCAATAACATTCAGAAGATTAAGGATCGTGTTAGGAGGCTTGAACGAC-AGATTGG 1082
Query 1182 AGATATCAATGAACA-GACAATGAAGAA-CACACAGGCTGAACAATCTGAAATCGAGGAG 1239
|||||| |||||| | ||| || ||||| |||||||| |||||||||||||||||| ||
Sbjct 1083 AGATATTAATGAA-ATGACTAT-AAGAAGCACACAGGTTGAACAATCTGAAATCGAAGAA 1140
Query 1240 AAACTAAAATATTTGGA-GC-AGGAGGTTGAGAAAGTTGAAACATTGCGTTCCAGATTGA 1297
||||| || | || || || | ||||||||||| | |||| |||||| ||| || ||||
Sbjct 1141 AAACTGAAGCAATT-GATGCTA-GAGGTTGAGAAGGCTGAATCATTGCTTTCTAGTTTGA 1198
Query 1298 AAGAGGAAGAGAAC-TGCTTCTTGGAAAAAGCGTTTGAAGGGA-GGAAAAAGATGGAACA 1355
||||||| |||||| || | | |||||||| | | ||| |||| ||| ||||||
Sbjct 1199 AAGAGGAGGAGAACATG-ATAATAGAAAAAGCATCAG-CCGGAGGGAAGGAGAAGGAACA 1256
Query 1356 CATCGAGGATATGATTAAAAACCATCAAAAGAGGCAAAGATTCATAACCTCGAACATTAA 1415
||| ||| ||||||||| | ||||| |||||| ||||||| ||||| | || |||| ||
Sbjct 1257 CATAGAGCATATGATTAGAGACCATGAAAAGAAGCAAAGAAACATAAACGCGCACATCAA 1316
Query 1416 TGATCTGAAGAAACATCAAACAAATAAGGTTACTGCATTTGGAGGGGACAGAGTCATTAA 1475
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 TGATCTGAAGAAACATCAAACAAATAAGGTTACCGCATTTGGAGGGGACAGAGTCATTAA 1376
Query 1476 TCTTCTGC-AGGCTATTGAGAGAAATCATCGTAGATTTAGAAAA-CCACCAATTGGTCCT 1533
|||| ||| || | ||||||||| |||| || ||||||| ||| ||||| ||||||||
Sbjct 1377 TCTTTTGCGAG-CGATTGAGAGACATCACCGCAGATTTA-AAATGCCACCGATTGGTCCG 1434
Query 1534 ATTGG-C---TC----C-CATGTGACTTTAGTCAATGGCAATAAATGGGCTTCTTCAGTT 1584
||||| | | | |||||||| || |||||||| |||| |||||||||| |||||
Sbjct 1435 ATTGGTCCGATTGGTGCTCATGTGACATTGGTCAATGGTAATAGATGGGCTTCTGCAGTT 1494
Query 1585 GAACAAGCTCTTGG-AACCCTATTAAATGCCTTCATTGTGA-CTGATCACAAAGATTCTC 1642
|||||||||||||| |||| | | |||||||| ||||||| | ||||||||||||| |
Sbjct 1495 GAACAAGCTCTTGGCAACC-TCCTGAATGCCTTTATTGTGAAC-GATCACAAAGATT-TA 1551
Query 1643 -TCACTCTAAGAGGCTGTGCGAATG-AAGCTAACTATAGA-AATCTTAAGATTATCATCT 1699
| ||| | ||| ||||| ||| | |||| || |||| | ||||| |||||||||||||
Sbjct 1552 GTTACTTTGCGAGACTGTG-GAAAGGAAGCAAATTATA-ACAATCTAAAGATTATCATCT 1609
Query 1700 ATGACTTTTCGAGACCAAGGTTAAATATACCAAGGCACATGGTGCCTCAGACAGAACACC 1759
|||||||||| ||||||||||||| |||||||||||||||| | ||||| ||||||||||
Sbjct 1610 ATGACTTTTCAAGACCAAGGTTAACTATACCAAGGCACATGATTCCTCAAACAGAACACC 1669
Query 1760 CAACTATAT-TCTCTGTCATAG-ACTCTGATAACCCAACCGTCCTTAATGTCTTGGTGGA 1817
||||||| | |||||||| | | |||| || || | || || ||||| |||||||||||
Sbjct 1670 CAACTAT-TCTCTCTGTCTT-GCACTCAGAGAATACTACTGTTCTTAACGTCTTGGTGGA 1727
Query 1818 TCAGAGTGGTGTTGAGAGGCAAGTGCTTGCAGAAAATTATGAGGAGGGAAAGGCGGTTGC 1877
| ||||||||| ||| ||| |||||||||||| |||||||| | || ||| | ||||
Sbjct 1728 TGTGAGTGGTGTAGAGCGGCGAGTGCTTGCAGAGAATTATGAAGTTGGCAAGACCATTGC 1787
Query 1878 ATTTGGGAAAAGGCTCTCAAATCTGAAGGAGGTTTACACTTTAGACGGATACAAAATGTT 1937
|||| || |||||| || ||||||| || |||| |||| |||| |||||| ||||||
Sbjct 1788 CTTTGAGAGAAGGCTTTCGCATCTGAATGATGTTTTCACTATAGATGGATACCGAATGTT 1847
Query 1938 TTTTCGTGGGCCAGTTCAGACTACTCTTCCTCCTCTTTCTCGTAGACCTTCGCGACTCTG 1997
|| |||||||| |||||||| || |||||||| | ||| || |||||| | ||| | ||
Sbjct 1848 TTCCCGTGGGCCTGTTCAGACAACCCTTCCTCCCCGTTCCCGGAGACCTACTCGATTGTG 1907
Query 1998 TGCTTCTTTTGATGACCAGATCAAGGATCTTGAAATAGAGGCTTCAAAAGAACAAAACGA 2057
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1908 TGCTTCTTTTGATGACCAAATCAAGGATCTTGAAATAGAGGCCTCAAAAGAACAAAGTGA 1967
Query 2058 GATAAATCAATGCATGAGACGTAAGAGGGAGGCAGAGGA-GAATCTTGAGGAACTTGAGT 2116
|||| | |||||| | ||| |||||||||||||| | |||||| |||| ||||| |
Sbjct 1968 GATACAGGAATGCAGGGGACAAAAGAGGGAGGCAGAA-ATGAATCTCGAGGGTCTTGAAT 2026
Query 2117 TGA-AAGTGCGCCA-ACTGAAGAAGCACCGCAGCCAAGC-AGAGAAGGTTTTGACGACAA 2173
| || |||| | |||||||||||| | || |||| | |||||| | |||||| | |
Sbjct 2027 CAACAA-TGCGT-AGACTGAAGAAGCAACACACCCAA-CTAGAGAAAGATTTGACAAGGA 2083
Query 2174 AGGAACTTGAGATGCACGATTTGAAGAATACAGTCGCTGCTGAGATCGAAGCATTACCTT 2233
||||| |||| ||||| ||| |||| ||| |||||||| |||| | | ||| || ||||
Sbjct 2084 AGGAAATTGAAATGCAGGATCTGAAAAATTCAGTCGCTTCTGAAACCAAAGTATCACCTA 2143
Query 2234 CTTCAAGTGTTAATGAGCTTCAACGT-GAAATCATGAAAGACCTAGAAGAGATAGATGAG 2292
|||||||||||||||||||||| | | || ||||||||| || |||||||||||| |||
Sbjct 2144 CTTCAAGTGTTAATGAGCTTCATC-TAGATATCATGAAATTCCAAGAAGAGATAGAGGAG 2202
Query 2293 AAAGAAGCTTTCCTTGAGAAGCTCCAAAACTGCTTGAAAGAAGCTGAGCTAAAGGCTAAT 2352
|||||| | || || || || || ||| ||| |||||| |||||||| |||||||||||
Sbjct 2203 AAAGAATCCTTGCTAGAAAAACTTCAAGACTCCTTGAAGGAAGCTGAAATAAAGGCTAAT 2262
Query 2353 AAACTTACAGCTTTATTTGAGAACATGCGTGAGTCAGCCAAGGGTGAAATTGATGCCTTT 2412
|||||| ||||| || ||| || || | | | | ||| |||||||| ||| ||
Sbjct 2263 GAACTTAAAGCTTCATATGAAAA-AT---T-A-T-AT----GGG-GAAATTGAAGCCCTT 2310
Query 2413 GAGGAAGCAGAGAATGAGCTAAAGAAGATTGA-GAAAGACCTTCAGTCTGCCGAAGCGGA 2471
||| |||| ||| ||||||||||| ||| || ||| || || || || || ||| ||||
Sbjct 2311 GAGAAAGCTGAGGATGAGCTAAAGGAGAAAGAAGAA-GAACTCCAATCCGCAGAAACGGA 2369
Query 2472 GAA-AATCCATTACGAGAACATAATGAAAAACAAGGTCCTACCTGATATTAAGA-ATGCT 2529
||| || |||||| ||| | |||||||| |||||||| |||| || ||||| | | |||
Sbjct 2370 GAAGAA-CCATTATGAGGATATAATGAAGGACAAGGTCTTACCCGAGATTAA-ACAGGCT 2427
Query 2530 GAGGCTAACTACGAGGAGCTTAAAAATAAGCGAAAGGAAAGTGACCAGAAGGCCTCTGA- 2588
|||||||| || ||||| ||||||| ||||| |||||||| || |||||||||| |
Sbjct 2428 GAGGCTAAATATGAGGAACTTAAAACGAAGCGGCAGGAAAGTAACGAGAAGGCCTCC-AT 2486
Query 2589 AATTTGTCCTGAGAGTGA-GATA-GAATCTTTGGGTCCCTGGGATGGGAGT-ACTCCTGA 2645
|||||||||||||||| | |||| || |||||||||| ||||||||| | ||||||
Sbjct 2487 AATTTGTCCTGAGAGT-ACGATAAGAG-CTTTGGGTCCTTGGGATGGG-GCCACTCCTTT 2543
Query 2646 GCAACTCAGTGCTCAGATTACCAGAATGAATCAGAGACTTCATCGAGAGAATCAG----- 2700
||| || ||||||||||||| || ||| ||||| ||||| | ||||||||| ||
Sbjct 2544 GCAGCTTAGTGCTCAGATTAACAAAATAAATCATAGACTGAAGCGAGAGAATGAGAAGTG 2603
Query 2701 C--A-GTTT-T---C-T-GAAT-C--AAT---T-GATGACCTTAGGATGATGTATGAGAG 2744
| | |||| | | | | || | ||| | |||||||| ||||| ||| | ||| |
Sbjct 2604 CTTAAGTTTCTGTGCCTTGTATTCTGAATCAATCGATGACCTCAGGATTATGCACGAG-G 2662
Query 2745 CCTA-GAAC-GAAAGATTGCAAAGAAGCGCAAATCCTATCAAGACCAT-CGAGAAAAACT 2801
| |||| ||| ||||| ||||| |||||| | || ||| | | | |||||||||||
Sbjct 2663 AAAAAGAACAGAA-GATTGGGAAGAAACGCAAAACTTA-CAAAAGCTTTCGAGAAAAACT 2720
Query 2802 CATGGCCTGCAAAAATGCTCTAGATTCACGGTGGGCCAAATTTCAAAGAAATGCATCTCT 2861
|| || ||||||| |||| |||| ||||||||| ||| | ||||||||| | |||
Sbjct 2721 CAAGGTCTGCAAAGATGCAGTAGACTCACGGTGGAACAAGCTCCAAAGAAATAAAGATCT 2780
Query 2862 TCTTCGGCGCCAGTTAACATGGCAATTCAACGCTCACTTGGGAAAGAAAGGTATCAGCGG 2921
||| || ||| ||||| |||||||| ||| |||| || ||||||||||||||||| ||
Sbjct 2781 TCTGAAGCCCCAATTAACTTGGCAATTTAACTCTCATTTAGGAAAGAAAGGTATCAGTGG 2840
Query 2922 ACACATCAAAGTCAGTTATGAAAATAAAACTTTGTCCATAGAGGTTAAAATGCCTCAAGA 2981
| | |||| |||| ||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 2841 AAATATCAGAGTCTCTTATGAAGACAAAACTTTGTCCATAGAGGTTAAGATGCCTCAAGA 2900
Query 2982 CGCAACAAGCAATG-TCGTTCGAGACACCAAAGGTCTTTCAGGCGGAGAACGTTCTTTCT 3040
||||||| || || | |||||||| || | ||| |||||||| || ||||| |||||||
Sbjct 2901 TGCAACAAACAGTGCT-GTTCGAGATACTAGAGGGCTTTCAGGTGGGGAACGATCTTTCT 2959
Query 3041 CAACTTTATGTTTTGCACTAGCTCTTCACGAGATGACAGAAGCCCCGTTTCGAGCAATGG 3100
| ||||||||||| ||| | ||||||||| | ||||| |||||||| ||||||||||||
Sbjct 2960 CGACTTTATGTTTCGCATTGGCTCTTCACAATATGACTGAAGCCCCAATTCGAGCAATGG 3019
Query 3101 ATGAGTTTGATGTGTTTATGGATGCAGTCAGTC-GGAAAATTAGCTTGGACGCACTGGTG 3159
| |||||||||||||||||||| ||||| || | ||||||| ||||| ||| || ||||
Sbjct 3020 ACGAGTTTGATGTGTTTATGGACGCAGTTAG-CAGGAAAATCAGCTTAGACACATTGGTT 3078
Query 3160 GATTTTGCAATTGGAG-AAGGATCGCAGTGGATGTTCATCACCCCTCATGATATCAGCAT 3218
||||| ||| ||||| |||| || ||||||||||||||||| ||||||||||| || ||
Sbjct 3079 GATTTCGCA-TTGGAACAAGGTTCACAGTGGATGTTCATCACTCCTCATGATATAAGTAT 3137
Query 3219 GGTGAAGTCGCACGAGAGGATAAAGAAACAGCAAATGGCTGCTCCTCGTTCTTGA 3273
||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 3138 GGTAAAGTCACACGAGAAGATAAAGAAGCAACAAATGGCTGCTCCTCGTTCTTGA 3192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137730356687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5