BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61470.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496306 jgi|Araly1|496306|fgenesh2_kg.8__2122__AT5G61470.1 1229 0.0
> Ahg496306 jgi|Araly1|496306|fgenesh2_kg.8__2122__AT5G61470.1
Length=1081
Score = 1229 bits (665), Expect = 0.0
Identities = 977/1119 (87%), Gaps = 56/1119 (5%)
Strand=Plus/Plus
Query 1 ATGTATTCACTTCTCAAGAAAACAAAAATCTGTCAGGTGTGCAAGAAATCATTTTCAAAC 60
|||||||||||||||||| |||||||| ||||||| | ||||||| |||||||||||||
Sbjct 1 ATGTATTCACTTCTCAAGGCAACAAAAACCTGTCAGATTTGCAAGAGATCATTTTCAAAC 60
Query 61 GGGAAAGCTCTTGGTGGTCACATGAGAGCTCACACTTTGAAATTTTTCC-CTGGATCATC 119
|||||||||||||||||||||||||| ||||||||| |||| ||||| | ||||||||
Sbjct 61 GGGAAAGCTCTTGGTGGTCACATGAGGGCTCACACTCGGAAA-CTTTCCGCCGGATCATC 119
Query 120 TTCATCAACTGGCTCGATCACTCCATCACTACGATCATGCAACAACCTTGGAGCAAGCTT 179
|| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 ATCGTCAACTGGCTCGGTCACTCCATCACTACGACCATGCAACAACCTTGGAGCAAGCTT 179
Query 180 TAGAAGACCTAATGAAACAGTTCTGGCGAGATTTGTCCACACCAGTGAAGTTGTTGGTGG 239
| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 180 T---AGACCTCCTGAAACAGTTCTGGTGAGATCTGTCCACACCAGTGAAGTTGTTGGTGG 236
Query 240 TCCAAAGCCAGATCTAAACAAAGAAGCTGAGCAACGAACAACTGTCAAGA-AAA-AGA-T 296
||||||||||||| |||||| ||||| |||||| | || ||||| ||||| ||| | | |
Sbjct 237 TCCAAAGCCAGATTTAAACACAGAAGGTGAGCAGCAAATAACTGCCAAGAGAAAGATAGT 296
Query 297 CGTCGTGGATTTGGAAGAGGAAAATTCGATAGAGTCTGAAAGCGATATAACTATTGAAGA 356
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 297 CGTCGTGGATCTGGAAGAGGAAGATTCGACAGAGTCTGAAAGCGATATAACTATTGAAGA 356
Query 357 AAGTGCTTTATGTCTTTTACAAATGAAGGATGACAACATGTCAGAATATCTTCAGAATCT 416
||||||||||||||||||| |||||||| | | | || | |||||||| |||||||||
Sbjct 357 AAGTGCTTTATGTCTTTTAAAAATGAAG-A-G-CGACCCGACAGAATATTTTCAGAATCC 413
Query 417 GAAATCGATTGATAGTTTGGTATCAACTCGAAAAAGAAAAGATACTGAAAA-CTATATCG 475
|||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 414 AAAATCGATTGATAGTTTGGTATCAACTCGAAAAAAAAAAGATACTGAAAAGC-ATATCG 472
Query 476 AAATAGATTCTGATGAAAATCACGAAGATA-GTGATGATGAGTACGTTGTTGAAGATGAA 534
||||||||||||||| | || | || || || ||| | | || ||||||||
Sbjct 473 TAATAGATTCTGATGA---T---GA-G-TACGT--TGCTGA--A-GATG---AAGATGAA 516
Query 535 GATGAAGACAATGAAGATGACGATGTTAAGTCTCTCACTTCAGATGTGGAAAACCTAATA 594
||||||||| |||||||||| ||| |||||| ||||||||||||| ||| | |||||| |
Sbjct 517 GATGAAGACGATGAAGATGAAGATATTAAGTTTCTCACTTCAGATATGGGAGACCTAACA 576
Query 595 GGAGACAGCGATGAAGATGATGATGATTATGGTGATGAAAACGCATATTACGGTGGAAAA 654
|||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||
Sbjct 577 GGAGACAGCGATGAAGATGAAGACGATTATGATGATGAAAACGCATATTACGGTGGGAAA 636
Query 655 -AGGAAAAGGGGTAAGAAACAAAGTAAATATACGTGTGATACTTGTGGAAAAGTTTTACG 713
|| | |||||||||||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 637 GAG-AGAAGGGGTAAGAAACAAAGCAAATATACGTGTGATATTTGTGGACAAGTTTTACA 695
Query 714 TTCGTATCAGGCATTAGGTGGTCATCGAACGAGCCACA-AATACAAGCGATTGAAGATTT 772
||||||||| |||||||| ||||||||||| ||||||| || |||| |||||||||||||
Sbjct 696 TTCGTATCAAGCATTAGGCGGTCATCGAACTAGCCACAGAA-ACAAACGATTGAAGATTT 754
Query 773 CCGACAAGAATTATTTCGGGGAAGATGGGCCAATAGTTCGACGACAA-TACGAGTGTCAA 831
||||||||||| ||| || |||||||||||| | ||||||||| | ||||||||||||
Sbjct 755 CCGACAAGAATCATTCCGCCGAAGATGGGCCAGTGGTTCGACGA-AGCTACGAGTGTCAA 813
Query 832 ATTTGTAACAGAATGTTTGCATCTGGTCAAGCACTTGGTGGTCACAAAAAGATTCACTAT 891
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATTTGTAACAGAGTGTTTGCATCTGGTCAAGCACTTGGTGGTCACAAAAAGATTCACTAT 873
Query 892 ATGTTCC-TAGCTCCAGCCAAGTAACTTGTCGATTTCCACCAAGTGACCATAGAATCTAT 950
| ||||| | |||||| |||||||||||||||| |||||||||||||||||| || ||||
Sbjct 874 ACGTTCCAT-GCTCCACCCAAGTAACTTGTCGACTTCCACCAAGTGACCATATAAACTAT 932
Query 951 GAAGCGTACCTAGATTTGGGTGACTAGTTG-A----GATAAACAAATAATAAAAAGAAAC 1005
|||||||| |||||||||||||| || | |||||||||||||||||| |
Sbjct 933 GAAGCGTA----GATTTGGGTGACTA-TTCCATTCCGATAAACAAATAATAAAA-----C 982
Query 1006 ATGCT-T-TCTTTTCTTTCTGTTTTCCGACTAATAAAACATGTTCTATGTTTTTATGTTG 1063
||||| | |||||||||| ||||||||||| ||||||||||||||| | |||| ||||||
Sbjct 983 ATGCTCTCTCTTTTCTTTTTGTTTTCCGACGAATAAAACATGTTCTCTATTTTAATGTTG 1042
Query 1064 TTA-ACCCTTTTTAAGTTTATTTTCCTACATCAATAAAA 1101
|| |||||||||||||||||||||| | || |||||||
Sbjct 1043 TTGTACCCTTTTTAAGTTTATTTTCCAATATTAATAAAA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5