BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61490.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332390 jgi|Araly1|332390|fgenesh1_pm.C_scaffold_8001733 865 0.0
> Ahg332390 jgi|Araly1|332390|fgenesh1_pm.C_scaffold_8001733
Length=786
Score = 865 bits (468), Expect = 0.0
Identities = 573/622 (92%), Gaps = 14/622 (2%)
Strand=Plus/Plus
Query 163 GAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTGTTACGGATAAAGCT 222
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTATTACGGATAAAGCT 237
Query 223 CCGGAACTTGACGAAGTTGATGATGCTTTCTCTGCACTTCAATTGATGTTCAATGATGAT 282
|||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 238 CCGGAACTTGAC---------GACGCTTTCTCTGCACTTCAGTTGATGTTCAATGATGAT 288
Query 283 GATGACGAAGAATCAGGAGACCAACTTTCAGAGTCAGAGTTTGTGGATTGGATTGAGCCT 342
|| | |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 289 GA--A-GAAGAATCAGGAGACCAAGTTTCAGAGTCGGAGTTTGTGGATTGGATTGAGCCT 345
Query 343 TCGTTGCAGCTTTGCAATACTAGCCTTCTACAGCCTTTTATGCTGGACAGACTCTATGAC 402
| |||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| |||
Sbjct 346 CCATTGCAGCTCTGCAATACTAGACTTCTACAGCCTTATATGCTTGACAGACTCTACGAC 405
Query 403 GCCTTTCATGTGTTTCAGACCGACCCATCTGTTCAGAGAATGGTTATGTCATTGACTTCA 462
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 406 GCCTTTCATGTGTTTCAGACCGATCCATCTGTTCAGAGAATGGTTATGTCCTTGACTTCA 465
Query 463 GACAAGGCTGTTTGGGATGCGGTGATGAACAATGAGGTTGTCCGGGAGCTTATAAGCAAC 522
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 466 GACAAGGCTGTTTGGGGTGCGGTGATGAGTAATGAGGTTGTCCGGGAGCTCATAAGTAAA 525
Query 523 GCTGAGAGGTCAGAAGAAGACTCTGGTTCAGCCGCAAATTTCTTAAGAAGGTTGTTTGAG 582
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 526 GCTGAGAGGTCAGAAGAAGACTCTGGTTCAGCCGCAAATTGCTTGAGAAGGTTGTTTGAG 585
Query 583 AGAAGTGCCGTCAAAATCATGGACGCAATGGAGAGAGTCACAAAGTATGTCACTGACCTT 642
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 586 AGAAGTGCCGTCAAAATCATGGACGCAATGGAGAGAGTCACAAAGTACGTCACTGAACTC 645
Query 643 TTCAACGTTGTTCCTGGAGATGAGACGGTTGTGTTAGCCTCAGGTGCTGCGCCTAAGATG 702
||||| |||||||||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 646 TTCAATGTTGTTCCTGGAGATGAGACTGTTGTGTTAGCCTCAGGTGCTGTGCCTGTGATG 705
Query 703 GAGAAGCTTCAAATGACGGTTCTGCTCGCCATTGTTGTCCTGCTTATCGTGTTAGTTACA 762
||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
Sbjct 706 GAGAAGCTTCAGATGACTGTTCTGCTCGCCATTCTTGTCCTGCTTATCGTGTTAGTTAAA 765
Query 763 CGAGTAACAAG-GTGTAGATAG 783
|||||||| || | ||||||||
Sbjct 766 CGAGTAACGAGAG-GTAGATAG 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5