BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61500.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496309 jgi|Araly1|496309|fgenesh2_kg.8__2125__AT5G61500.1 2222 0.0
Ahg947485 jgi|Araly1|947485|scaffold_703714.1 475 3e-133
> Ahg496309 jgi|Araly1|496309|fgenesh2_kg.8__2125__AT5G61500.1
Length=1403
Score = 2222 bits (1203), Expect = 0.0
Identities = 1349/1417 (95%), Gaps = 19/1417 (1%)
Strand=Plus/Plus
Query 2 AAATTTGACGGAATCTATAAGATAATTTTCTCCCTAGGGATTAGGGCT-CACAATCTCAA 60
|||||||||||||||||| | || ||| | |||||||||||| | | ||| || |
Sbjct 1 AAATTTGACGGAATCTAT---A-AA---TCTGCTTAGGGATTAGGG-TCCGCAA--TCGA 50
Query 61 ATCTCTGA--TTCTTCGATACGATAAATTCTTCCTCGATATAGAAACCACTGATTAGATC 118
||||| | ||| ||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 51 ATCTCAAATTTTCGCCGATACGATAAATCCTTCCTCGATAT--AAACCATTGATTAGATC 108
Query 119 CTAATTCGTCGCCTAGCTCAAAAGATGGTGCTTTCGCAAAAGCTTCATGAAGCATTTAAA 178
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 109 CTAATTCATCG-CTAGCTCAAAAGATGGTGCTTTCACAAAAGCTTCATGAAGCATTTAAA 167
Query 179 GGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTT 227
Query 239 CTCAGCGTCAGCGAGTTCGTACTTGCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGG 298
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 228 CTCAGCGTCAGCGAGTTCGTACTCGCCGGAGATAATCTCGTCTCCAAGTGTCCTACCTGG 287
Query 299 TCTTGGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTT 358
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCCTGGGAATCTGGTGACCCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTT 347
Query 359 TTGATTACTAGAAATGTACCTTGTCTACGGAGAGCTGCTTCTGTGGCAGAGGATTATGAA 418
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 348 TTGATTACTAGAAATGTACCTTGTCTACGGAGAGCTGCATCTGTGGCAGAGGATTATGAA 407
Query 419 GCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 408 GCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCGACACAT 467
Query 479 GGGAAACCGAAAGATAAAGGCAAGGAAGAGGATAACTTACCATCCATGGATGCCTTGGAT 538
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 468 GGGAAACCGAAAGATAAAGGCAACGAAGATGAAAACTTACCATCCATGGATGCCTTGGAC 527
Query 539 ATAAACGAGAAAAATACTATCCAATCAATACCTACGTATTTTGGAGGTGAGGAGGATGAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 ATAAACGAGAAAAATACTATCCAATCAATACCTACGTATTTTGGAGGTGAGGAGGATGAT 587
Query 599 GATATTCCAGACATGGAGGAGTTCGATGAGGCTGACAATGTGGTAGAAAATGATCCGGCA 658
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 588 GATATTCCAGACATGGAGGAGTTTGATGAGGCTGACAATGTGGTAGAAAATGACCCGGCA 647
Query 659 ACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACT 707
Query 719 CGGACATATGATCTCAGCATAACGTATGATAAGTATTACCAAACTCCTCGTGTTTGGCTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CGGACATATGATCTCAGCATAACGTATGATAAGTATTACCAAACTCCTCGTGTTTGGCTG 767
Query 779 ACCGGTTATGATGAGTCAAGGATGCTGCTGCAACCTGAACTTGTAATGGAGGATGTTAGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ACCGGTTATGATGAGTCAAGGATGCTGCTGCAACCTGAACTTGTAATGGAGGATGTTAGC 827
Query 839 CAAGACCATGCTCGTAAAACGGTCACAATCGAAGATCATCCACACTTGCCTGGTAAACAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CAAGACCATGCTCGTAAAACGGTCACAATCGAAGATCATCCACACTTGCCTGGTAAACAT 887
Query 899 GCTTCAGTTCATCCATGTCGGCATGGAGCTGTTATGAAGAAAATCATTGATGTATTAATG 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 888 GCTTCAGTTCATCCCTGTCGGCATGGAGCTGTTATGAAGAAAATCATTGATGTGTTAATG 947
Query 959 TCGCGTGGAGTAGAACCTGAAGTCGACAAGTACCTCTTCCTGTTCTTGAAGTTCATGGCA 1018
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 948 TCGCGTGGAGTAGAACCTGAAGTTGACAAGTACCTCTTCCTGTTCTTGAAGTTCATGGCA 1007
Query 1019 TCAGTTATTCCAACAATTGAGTACGATTACACAATGGACTTTGATCTCGGTAGCTCAAGC 1078
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1008 TCAGTTATTCCAACAATTGAGTATGATTACACGATGGACTTTGATCTCGGTAGCTCAAGC 1067
Query 1079 ACCTAATATCAGATTTAAACAAGTATGTGCTCGTGAATCCGGGAAACAAGT-A-TGGTCT 1136
|||||||| |||||||| |||||||||||||||||||||| |||| ||| | | ||||||
Sbjct 1068 ACCTAATACCAGATTTATACAAGTATGTGCTCGTGAATCCTGGAAGCAA-TCACTGGTCT 1126
Query 1137 CATGGATGGCTGGATGGCTCTGCACTGTACATAAAACAGAGTCCTCACTTTCATTTCTCT 1196
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1127 CATGGATGGCTGGATGGCTCTGCACTGTACATAAATCAGAGTCCTCACTTTCATTTCTCT 1186
Query 1197 CCAAGATAAACTTTAAGGTGTTGTGGTTTAATCACTCGTTTATCTAAAGTTTACGCTGAT 1256
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CCAAAAGAAACTTTAAGGTGTTGTGGTTTAATCACTCGTTTATCTAAAGTTTACGCTGAT 1246
Query 1257 GAATAGTAATTTGTGACAAAACTCTGAAAACGGGTATTTGATCAAAACTGATTCGGTGTG 1316
||||| |||||||||| | |||| |||||||||||||||||||||||||||||| |||
Sbjct 1247 GAATACTAATTTGTGATGATACTCGGAAAACGGGTATTTGATCAAAACTGATTCGTTGTA 1306
Query 1317 GTTCAAAAAACAGAATGTGATTTAGTGTGTTTAATACACTCTTGCTTTGGAGAAGTTGGG 1376
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1307 GTTCAAAAAACAGAATGTGATTTAGTGTGTTTGGTACACTCTTGCTTTGGAGAAGTTGGG 1366
Query 1377 CTTAATATTTAAAATGACAAATCACTATATTCTTATT 1413
|||||| ||| ||||| || |||||||||||||||||
Sbjct 1367 CTTAATGTTTGAAATGTCATATCACTATATTCTTATT 1403
> Ahg947485 jgi|Araly1|947485|scaffold_703714.1
Length=750
Score = 475 bits (257), Expect = 3e-133
Identities = 301/323 (93%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 332 CCATACTTGCCCTCGGACAAACAGTTTTTGATTACTAGAAATGTACCTTGTCTACGGAGA 391
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CCATACTTGCCCTCAGACAAACAGTTTTTGATTACTAGAAATGTACCTTGTCTACGGAGA 288
Query 392 GCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAA 451
||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 289 GCTGCATCTGTGGCTGAGGAATATGAAGCTGCTGGAGGTGAAGTATTGGTTGATGATGAA 348
Query 452 GATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGATAAAGGCAAGGAAGAGGAT 511
||||||||||||||||| || |||||||||||||||||||||||||| || ||||| ||
Sbjct 349 GATAATGATGGTTGGCTAGCGACACATGGGAAACCGAAAGATAAAGGAAACGAAGATGAA 408
Query 512 AACTTACCATCCATGGATGCCTTGGATATAAACGAGAAAAATACTATCCAATCAATACCT 571
||||| ||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct 409 AACTTGCCATCAATGGATGTCTTGGATATAAACGAGAGAAACGCTATCCAATCAATACCC 468
Query 572 ACGTATTTTGGAGGTGAGGAGGATGATGATATTCCAGACATGGAGGAGTTCGATGAGGCT 631
|||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct 469 ACGTATTTTGGAGGTGAGGAAGATGATGATATTCCAGACATGGAAGAGTTTGACGAGGCT 528
Query 632 GACAATGTGGTAGAAAATGATCC 654
|||||||||||||||||||||||
Sbjct 529 GACAATGTGGTAGAAAATGATCC 551
Score = 102 bits (55), Expect = 6e-21
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 173 TTTAAAGGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAG 232
|||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTAAAGGGACAGTGGAGAGAATGACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAG 60
Query 233 GGAGTTCTCA 242
||||| ||||
Sbjct 61 GGAGTACTCA 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5