BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61510.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496310 jgi|Araly1|496310|fgenesh2_kg.8__2126__AT5G61510.1 1978 0.0
> Ahg496310 jgi|Araly1|496310|fgenesh2_kg.8__2126__AT5G61510.1
Length=1284
Score = 1978 bits (1071), Expect = 0.0
Identities = 1200/1262 (95%), Gaps = 10/1262 (1%)
Strand=Plus/Plus
Query 56 tcatcgtcatcaCTCGTGTCTTCAAGCGTCTGGACATCTGTCACGTCGTCTATATCACCG 115
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 TCATCATCAACACTCGTGTCTTCAAGCGTCTGGACATCTGTCACGTCGTCTATATCACCC 83
Query 116 AATATTCTCGAGCTTTCCACGAAATCCCGTCAAAGATCTCAACTTTCGTCTAAGTCTTGC 175
|||||||||||||||| ||||||||| ||||||||||||||||||||||||| || | |
Sbjct 84 AATATTCTCGAGCTTTTCACGAAATCATGTCAAAGATCTCAACTTTCGTCTAAATCCTAC 143
Query 176 CGATTTCTCGAGTTTTTCTTTATCTACACGTGGCACTGTGTTTGCTGTAAGAGCTCTGAG 235
||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 144 CGATTTCTCGATTTTTTCTTTGTCTACACGCGGCACTGTGTTTGCTGTAAGAGCTCTGAG 203
Query 236 T---ACAGTCGCGGTAGAAGAGTCGTCC---G-AGAAGAAGATGGTGAAAGGGATTAGGG 288
| ||||||| ||| ||||||||| || | |||||||||||||||||||||||||||
Sbjct 204 TACAACAGTCGTGGTTGAAGAGTCG-CCGGAGAAGAAGAAGATGGTGAAAGGGATTAGGG 262
Query 289 TTTATGAGCATGGCGGTCCTGAGGTTCTGAAATGGGAAGATGTGGAAGTAGGGGAACCAA 348
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 263 TTTACGAGCATGGCGGTCCTGAGGTTCTGAAATGGGAAGATGTGGAAGTTGGGGAACCAA 322
Query 349 AGGAGGGTGAGATACGTGTGAAGAACAAGGCTATCGGGCTTAACTTTATTGATGTTTACT 408
|||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 323 AGGAGGGTGAGATACGAGTGAAGAATAAGGCGATCGGGCTTAACTTCATTGATGTTTACT 382
Query 409 TCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAGGTATGGAGGCTGTTG 468
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 383 TCAGGAAAGGTGTTTACAAGCCAGCTTCAATGCCCTTCACACCAGGTATGGAGGCTGTTG 442
Query 469 GAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTT 502
Query 529 ATGCTGGAAATCCGATGGGTGCGTATGCTGAGGAACAAATCCTTCCAGCGGATAAAGTGG 588
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 503 ACGCTGGAAATCCGATGGGTGCGTATGCTGAGGAACAAATTCTTCCAGCGGATAAAGTGG 562
Query 589 TTCCTGTTCCTTCATCTATTGATCCTATCGTTGCAGCATCAATCATGCTCAAGGGTATGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TTCCTGTTCCTTCATCTATTGATCCTATCGTTGCAGCATCAATCATGCTCAAGGGTATGA 622
Query 649 CTGCACAGTTTCTCCTTCGCCGTTGCTTCAAGGTCGAACCTGGGCACACAATCCTTGTTC 708
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 623 CTGCACAGTTTCTCCTTCGCCGTTGCTTCAAGGTCGAACGTGGGCACACAATCCTTGTTC 682
Query 709 ATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCA 768
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 683 ATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCGAATGCGCTCGGAGCCA 742
Query 769 CTGTGATTGGAACTGTCTCGACCAATGAGAAAGCGGCTCAAGCCAAAGAAGATGGATGCC 828
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 743 CTGTCATTGGAACTGTCTCGACCAATGAGAAAGCGGCTCAAGCCAAAGAAGATGGATGTC 802
Query 829 ACCATGTTATTATGTACAAGAACGAGGATTTTGTTTCCCGAGTCAATGACATTACATCGG 888
||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 803 ACCATGTTATTTTGTACAAGAATGAGGATTTCGTTTCCCGGGTCAATGACATTACATCGG 862
Query 889 GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGGGATCGTTAG 948
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 863 GTAAAGGAGTTAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGGGATCATTAG 922
Query 949 CATGTTTGAAGAGCCGAGGATACATGGTGAGCTTTGGACAATCCTCAGGATCTCCAGATC 1008
||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 923 CATGTTTAAAAAGCCGGGGATACATGGTGAGCTTTGGACAGTCCTCGGGATCTCCAGATC 982
Query 1009 CGATTCCATTATCTGATCTTGCTCCAAAGTCGCTCTTCTTGACAAGACCTTCCATGATGC 1068
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 983 CGATTCCATTATCTGATCTTGCTCCAAAATCTCTCTTCTTGACAAGACCTTCCATGATGC 1042
Query 1069 ATTACAATGAAACTCGAGATGAGCTCTTGGAATGTGCAGGAGAGGTTTTCGCTAATGTTA 1128
| |||||||||||||| || |||||||||||||||||||||||||||||||| ||| | |
Sbjct 1043 AATACAATGAAACTCGGGACGAGCTCTTGGAATGTGCAGGAGAGGTTTTCGCCAATATAA 1102
Query 1129 CCTCCGGCATCTTAAAGGCTCGTGTGAATCACAAGTACCCGTTGTCTCGAGTCGCTGACG 1188
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1103 CATCCGGCATCTTAAAGGCTCGTGTGAATCACAAGTACCCGTTGTCTCGAGTCGCTGATG 1162
Query 1189 CCCACGCAGATCTTGAGAATAGGATCACCTCTGGCTCCGTTGTGCTCTTGCCATGAAAAC 1248
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1163 CCCATGCAGATCTTGAGAATAGGATCACCTCTGGCTCCGTTGTGCTCTTGCCGTGAAAAC 1222
Query 1249 ATATACAATGATGTTAGTATCT-TT-CAATAAGGGCAATGAGATTCCTTTGTGATGGAAA 1306
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1223 ATATACAATGATGGTAGTATCTCTTTCAATAAGGGCAATGAGATTCCTTTGTGATGGAAA 1282
Query 1307 GA 1308
||
Sbjct 1283 GA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5