BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61520.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950909 jgi|Araly1|950909|scaffold_802796.1 2375 0.0
> Ahg950909 jgi|Araly1|950909|scaffold_802796.1
Length=1564
Score = 2375 bits (1286), Expect = 0.0
Identities = 1451/1531 (95%), Gaps = 9/1531 (1%)
Strand=Plus/Plus
Query 107 AGAAGAAGCAAGAAAAGAAGCCATGGCTAAATCAGTATCTGGCGGGAAGATTACTTATTT 166
|||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||
Sbjct 7 AGAAGAAGCAAGAAAACAAGCCATGGCTAAATCAGAATCTGGCGGGAAGATAACGTATTT 66
Query 167 TGTGGTGGCTTCATGTGTCATGGCCGCCATGGGCGGTGTCATCTTCGGCTACGACATCGG 226
||||||||| ||||||||||||||||||||||| |||||| | || ||||||||||||||
Sbjct 67 TGTGGTGGCATCATGTGTCATGGCCGCCATGGGAGGTGTCCTATTTGGCTACGACATCGG 126
Query 227 GGTTTCAGGTGGAGTGATGTCAATGGGGCCATTTCTAAAAAGATTTTTCCCAAAAGTGTA 286
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 127 GGTTTCAGGTGGAGTGATGTCAATGGGGCCATTTCTGAAAAGATTTTTCCCAAAAGTGTA 186
Query 287 TAAGCTCCaagaagaagatagaagaagaagaGGCAATAGCAATAACCACTACTGCCTTTT 346
||||||||||||||||||||||||||||||| || | |||||||| || || |||||
Sbjct 187 TAAGCTCCAAGAAGAAGATAGAAGAAGAAGA---AACATTAATAACCATTATTGTCTTTT 243
Query 347 CAATAGCCAACTTCTTACATCCTTCACATCTTCTCTATACGTTTCCGGTC-TCATCGCTA 405
|||||||||||||||||| |||||||||||||||||||||||||| || | |||||||||
Sbjct 244 CAATAGCCAACTTCTTACGTCCTTCACATCTTCTCTATACGTTTCTGG-CTTCATCGCTA 302
Query 406 CTCTGTTAGCTTCGTCCGTGACTCGTTCATGGGGTCGCAAGCCCTCTATATTTCTTGGCG 465
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 303 CTCTGTTGGCTTCGTCCGTGACTCGTTCTTGGGGTCGCAAGCCCTCTATATTTCTCGGTG 362
Query 466 GTGTGTCCTTTCTCGCCGGCGCTGCTCTTGGTGGCTCTGCTCAAAACGTTGCTATGCTCA 525
| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GCGTGGCCTTTCTCGTCGGCGCTGCTCTTGGTGGCTCTGCTCAAAACGTTGCTATGCTCA 422
Query 526 TTATTGCGCGTCTCTTGCTCGGCGTAGGAGTTGGATTCGCTAACCAGTCGGTTCCTCTGT 585
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCATTGCACGTCTCTTGCTCGGCGTAGGAGTTGGATTCGCTAACCAGTCGGTTCCTCTGT 482
Query 586 ATCTCTCCGAGATGGCGCCGGCAAAATACAGAGGAGCAATCAGCAATGGTTTCCAGCTCT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATCTCTCCGAGATGGCGCCGGCAAAATACAGAGGAGCAATCAGCAATGGTTTCCAGCTCT 542
Query 646 GTATCGGAATTGGATTTCTATCTGCAAATGTAATAAACTACGAAACCCAAAATATCAAAC 705
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 543 GTATCGGAATTGGATTTCTATCTGCAAATATAATAAACTACGAAACCCAAAAGATCAAAC 602
Query 706 ATGGTTGGAGAATCTCTTTAGCCACAGCTGCAATACCTGCTTCAATCCTCACTTTAGGAT 765
| |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| |
Sbjct 603 ACGGTTGGAGAATCTCTTTAGCCACAGCCGCAATTCCGGCTTCAATACTCACTTTAGGCT 662
Query 766 CACTGTTTCTCCCGGAAACGCCGAATAGTATCATCCAGACCACCGGAGATGTTCACAAGA 825
|||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 663 CACTATTTCTCCCGGAAACGCCAAACAGTATCATCCAGACAACCGGAGATGTTCACAAGA 722
Query 826 CCGAGCTTATGCTTCGCCGTGTCCGTGGAACTAACGACGTTCAAGATGAGCTTACTGATC 885
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 723 CCGAGCTTATGCTTCGCCGTGTCCGTGGAACAAACGACGTTCAAGACGAGCTTACTGATC 782
Query 886 TCGTTGAAGCGAGTTCTGGTTCTGATACAGATTCAAACGCGTTTTTGAAACTGCTTCAAA 945
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 783 TCGTTGAAGCGAGTTCTGGTTCTGATACAGATTCAAACGCGTTTGCGAAACTGCTTCAAA 842
Query 946 GAAAATATAGGCCTGAGTTAGTGATGGCTTTGGTGATACCTTTCTTTCAGCAAGTTACTG 1005
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 843 GAAAATATAGGCCTGAGTTAGTGATGGCTTTGGCGATACCTTTCTTTCAGCAAGTTACTG 902
Query 1006 GAATCAATGTTGTTGCTTTCTACGCACCGGTTTTGTATAGAACCGTTGGGTTTGGAGAGA 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAATCAATGTTGTTGCTTTCTACGCACCGGTTTTGTATAGAACCGTTGGGTTTGGAGAGA 962
Query 1066 GTGGTTCGTTGATGTCGACCCTCGTGACTGGAATCGTGGGAACCTCGTCGACGTTGTTGT 1125
|||||||||||||||| || |||||||| ||||||||||||||| |||||||||| ||||
Sbjct 963 GTGGTTCGTTGATGTCCACGCTCGTGACCGGAATCGTGGGAACCACGTCGACGTTCTTGT 1022
Query 1126 CGATGCTTGTCGTTGACAGAATCGGTAGAAAGACTCTGTTTTTGATTGGAGGGTTACAGA 1185
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CGATGCTTGTTGTAGACAGAATCGGTAGAAAGACTCTGTTTTTGATTGGAGGGTTACAGA 1082
Query 1186 TGCTCGTGTCGCAAGTTACCATTGGTGTGATCGTTATGGTGGCTGATGTTCA-CGACGGT 1244
|||| ||||||||||||||||| ||||||||| ||||||| ||||| || || |||||||
Sbjct 1083 TGCTTGTGTCGCAAGTTACCATCGGTGTGATCATTATGGTTGCTGACGT-CAACGACGGT 1141
Query 1245 GTGATCAAGGAAGGGTATGGTTACGCGGTTGTGGTTTTGGTGTGTGTCTACGTGGCCGGG 1304
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1142 GTGATCAAGGAGGGGTATGGTTACGCGGTTGTGGTTTTGGTGTGTGTCTACGTGGCGGGG 1201
Query 1305 TTTGGTTGGTCTTGGGGTCCATTAGGATGGCTTGTACCGAGTGAGATTTTTCCGTTGGA- 1363
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTTGGTTGGTCGTGGGGTCCATTAGGATGGCTTGTACCGAGTGAGATTTTTCCGTTGGAT 1261
Query 1364 GATAAGATCGGTGGCGCAGAGTGTAACTGTGGCAGTGAGTTTTGTGTTTACTTTTGCGGT 1423
| ||||||||| |||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1262 G-TAAGATCGGCGGCGCAGAGTGTGACGGTAGCAGTGAGTTTTGTGTTTACTTTTGCGGT 1320
Query 1424 GGCTCAAAGTGCACCACCGATGTTGTGTAAGTTTCGAGCTGGGATTTTCTTCTTTTATGG 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGCTCAAAGTGCACCACCGATGTTGTGTAAGTTTCGAGCTGGGATTTTCTTCTTTTATGG 1380
Query 1484 AGGGTGGTTGGTGGTAATGACGGTAGCGGTGCAGCTGTTTTTGCCGGAGACTAAGAATGT 1543
||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1381 AGGGTGGTTGGTGGTGATGACTGTGGCAGTGCAGCTGTTTTTGCCGGAGACTAAGAATGT 1440
Query 1544 TCCAATCGAGAAGGTGGTTGGACTTTGGGAGAAGCATTGGTTTTGGAGGAGAATGACGAG 1603
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TCCGATCGAGAAGGTGGCTGGACTTTGGGAGAAGCATTGGTTTTGGAGGAGAATGACGAG 1500
Query 1604 CAAGCGTGATATCCAAGAAACCACCATTCTT 1634
|||||||||||||||| |||||||||| |||
Sbjct 1501 CAAGCGTGATATCCAATAAACCACCATACTT 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5