BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61540.1
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496317 jgi|Araly1|496317|fgenesh2_kg.8__2133__AT5G61540.1 1941 0.0
Ahg887411 jgi|Araly1|887411|Al_scaffold_0365_2 468 5e-131
> Ahg496317 jgi|Araly1|496317|fgenesh2_kg.8__2133__AT5G61540.1
Length=1286
Score = 1941 bits (1051), Expect = 0.0
Identities = 1149/1197 (96%), Gaps = 4/1197 (0%)
Strand=Plus/Plus
Query 36 GAGCTCACAGCCATGGCGAGAAGCGATGTTTTGATTTTTGTTTCTACTCTTCTTCTGTTT 95
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 GAGCTCACGGCCATGGCGAGAATCGATCTTTTGATTTTTGTTTCTACTCTTCTTCTGTTT 60
Query 96 CTGTCTCTGCTTACGGTAGCTGATGCGGAATTGGTGAAATCTGACAAGTTTCCGGTAGTG 155
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTGCCTCTACTTACGGTAGCTGATGCGGAATTGGTGAAATCTGAAAAGTTTCCGGTAGTG 120
Query 156 GTGAGTACTTGGCCTTTCCTTGAAGCTGTTAGAGCTGCTTGGAGAGCAGTTGATAATGGG 215
||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 121 GTGAGTACTTGGCCTTTCCTTGAGGCCGTTAGAGCTGCTTGGAGAGCAGTTGATAGTGGG 180
Query 216 AGCTCTGCAGTGGAAGCTGTTGTTGAAGGTTGTTCTGCTTGTGAAGAACTTCGTTGTGAC 275
|| |||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 181 AGTTCTGCAGTAGAAGCTGTTGTGGAAGGTTGTTCTGCTTGCGAGGAACTTCGTTGTGAC 240
Query 276 GGTACAGTTGGGCCTGGAGGAAGTCCGGATGAGAATGGTGAGACCATGATTGATGCTTTA 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTACAGTTGGGCCTGGAGGAAGTCCGGATGAGAATGGTGAGACCATGATTGATGCTTTA 300
Query 336 GTCATGGATGGGGTGACTATGGAGGTTGGAGCTGTTGCTGCAATGCGGTATGTTAAAGAC 395
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GTCATGGATGGGGTGACTATGGAGGTTGGAGCGGTTGCTGCAATGCGGTATGTTAAAGAC 360
Query 396 GGTATAAGAGCTGCACATCTAGTGATGAAATACTCTCAACACACGTTGCT-TGCCGGAGA 454
|||||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 361 GGTATAAGAGCTGCACTTCTAGTGATGAAATACTCTCAACACACATTGCTCT-CCGGAGA 419
Query 455 AGGAGCATCAGCATTTGCAATCTCCATGGGTCTCCCCGGACCCATGAACCTAAGCTCCCC 514
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AGGAGCATCAGCATTTTCAATCTCCATGGGTCTACCCGGACCCATGAACCTAAGCTCCCC 479
Query 515 TGAATCTGTAAAGAAGTGGTCGGACTGGAAAGAGAATCAGTGTCAACCCAATTTCAGGAA 574
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TGAATCTGTAAAGAAGTGGTCGGACTGGAAAGAGAATCAATGTCAACCCAATTTCAGGAA 539
Query 575 GAATGTAGTCCCCGCAAATGACTGTGGACCTTACAAGCCAAACAATAGTGCTATGAATGT 634
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 GAATGTAGTCCCTGCAAATGACTGTGGACCTTACAAGCCAAACAATGGTGCTATGAATGT 599
Query 635 TTTTGTAGACAAAAGCACTGAATCTTGCGAGATGGGGGCGATTGAGTATAAACCTCCTCT 694
|| || | ||||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 600 TTCTGGATACAAACGCACTGAATCTTGCGAGATGGGGGAGATTGAGTATAGACCTCCTCT 659
Query 695 TGTTGGTCCTCACAATCACGATACGATATCGATGGCTGTCATTGACAGAATGGGGCATAT 754
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 660 TGTTGGTCCTCACAATCACGATACCATATCGATGGCTGTCATTGACAAAATGGGGCATAT 719
Query 755 AGCTGTTGGGACATCGACCAATGGAGCCACATATAAAATTCCTGGAAGGGTTGGTGATGG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCTGTTGGGACATCGACCAATGGAGCCACATATAAAATTCCTGGAAGGGTTGGTGATGG 779
Query 815 GCCTATCGTCGGTTCATCAGCCTACGCTGATGATGAAGTAGGTGGATGTGGTGCAACTGG 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCCTATCGTCGGTTCATCAGCCTACGCTGATGATGAAGTAGGTGGATGTGGTGCAACTGG 839
Query 875 AGATGGTGACACCATGATGCGCTTCCTCCCTTGTTACCAAGTTGTGGAGAGCATGAGACA 934
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGATGGGGACACCATGATGCGCTTCCTCCCTTGTTACCAAGTTGTGGAGAGCATGAGACA 899
Query 935 AGGAATGAAACCAGAAGAAGCTGCTAAAGATGCAATCTCGAGAATCGCAAGGAAGTTTCC 994
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 AGGAATGAAACCAGAAGAAGCTGCTAAAGACGCAATCTCGAGAATCGCAAGGAAGTTTCC 959
Query 995 AGATTTCGTGGGAGCAGTTGTGGCTGTTGACAAGAACGGATCTCACGCAGGAGCTTGCTA 1054
||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 960 AGATTTCGTGGGAGCCGTTGTGGCTGTTGACAAGAACGGGTCTCACTCAGGAGCTTGCCA 1019
Query 1055 TGGCTGGACGTTTCAGTACTCAGTCCAAAACCCTGACATGAACGATGTTCAAGTCTTTAC 1114
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 1020 TGGCTGGACGTTTCAGTACTCAGTCCAGAACCCTGACATGGACGATGTTCAAGTCTTCAC 1079
Query 1115 AGTTCTTCCATGAAAC-AGGATCATAGGATTGAAGGTGTCTAAAAGTGATTGTAGTAACA 1173
||| |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 AGTGCTTCCATGAAACCAG-ATCATAGGATTGAAGGTTTCTAAAAGTGATTGTAGTAACA 1138
Query 1174 ACAATGAAACGGCAAGAAGTTCATGTCTGGAAATACGGAATGGCAAGCTCGTTTGGA 1230
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1139 ACAAAGAAACGGCACGAAGTTCATGTCTGGAAATATGGAATGGCAAGCTCGTTTGGA 1195
> Ahg887411 jgi|Araly1|887411|Al_scaffold_0365_2
Length=321
Score = 468 bits (253), Expect = 5e-131
Identities = 304/327 (93%), Gaps = 9/327 (3%)
Strand=Plus/Plus
Query 804 GTTGGTGATGGGCCTATCG--TCGGTTCATCAGC-CTACGCTGATGATGAAGTAGGTGGA 860
||||||||||||| ||||| | | || | | | |||||||||||||||||| ||||||
Sbjct 1 GTTGGTGATGGGCTTATCGACACCG-TC-T-ACCACTACGCTGATGATGAAGTCGGTGGA 57
Query 861 TGTGGTGCAACTGGAGATGGTGACACCATGATGCGCTTCCTCCCTTGTTACCAAGTTGTG 920
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 58 TGTGGTGCAACTGGAGATGGTGACACCATGATGCGCTTCCTCCC---TTACCAAGTTGTG 114
Query 921 GAGAGCATGAGACAAGGAATGAAACCAGAAGAAGCTGCTAAAGATGCAATCTCGAGAATC 980
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 115 GAGAGCATGAGACAAGGAATGAAACCAGAAGAAGCTGCTAAAGACGCAATCTCGAGAATC 174
Query 981 GCAAGGAAGTTTCCAGATTTCGTGGGAGCAGTTGTGGCTGTTGACAAGAACGGATCTCAC 1040
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 175 GCAAGGAAGTTTCCAGATTTCGTGGGAGCCGTTGTGGCTGTTGACAAGAACGGGTCTCAC 234
Query 1041 GCAGGAGCTTGCTATGGCTGGACGTTTCAGTACTCAGTCCAAAACCCTGACATGAACGAT 1100
||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 235 TCAGGAGCTTGCCATGGCTGGACGTTTCAGTACTCAGTCCAGAACCCTGACATGGACGAT 294
Query 1101 GTTCAAGTCTTTACAGTTCTTCCATGA 1127
||||||||||| ||||| |||||||||
Sbjct 295 GTTCAAGTCTTCACAGTGCTTCCATGA 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5