BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61550.2
Length=2715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497409 jgi|Araly1|497409|fgenesh2_kg.365__1__AT5G61550.1 4047 0.0
Ahg496318 jgi|Araly1|496318|fgenesh2_kg.8__2134__AT5G61550.1 1943 0.0
> Ahg497409 jgi|Araly1|497409|fgenesh2_kg.365__1__AT5G61550.1
Length=2618
Score = 4047 bits (2191), Expect = 0.0
Identities = 2462/2595 (95%), Gaps = 9/2595 (0%)
Strand=Plus/Plus
Query 11 ACCAAACTTAGGGTTCTTCTTTGTTCTCTGCTTCAACAGAACTACAGGATTAAACAATGG 70
||||||| |||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1 ACCAAACATAGGGTTCTTGTTTGTTCTCTGCTTGAACAGAACTACAAGATTAAACAATGG 60
Query 71 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAACACCTATCACTACCTCCTCCACCATCTC 130
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAGCACCTATCACTACCTCCTCCACCATCTC 120
Query 131 CTTCTGTAGCGGTAGCCATCAACGGGAAGAAGAAGAGCAAATACGTCGTTTTTTGGGCTC 190
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 121 CTTCTGTAGCGGTAGCCATAAATGGGAAGAAGAAGAGCAAATACGTCGCTTTTTGGGCTC 180
Query 191 TTGAGAAGTTTATACCTGAAGGTTTCACTGATTTCAAATTGCTCTATGTTCGTCCTCCTG 250
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTGAGAAGTTCATACCTGAAGGTTTCACTGATTTCAAATTGCTTTATGTTCGTCCTCCTG 240
Query 251 TCTCTTACATCCCTACCCCAATGGGGATTGCGGTAGCGGTATCAGAGCTTAGAGAGGATG 310
|| ||||||||||||||||||||||| | || || |||||||||||||||| || || |
Sbjct 241 TCAGTTACATCCCTACCCCAATGGGGAATACGATATCGGTATCAGAGCTTAGGGACGACG 300
Query 311 TAGTATCAGCTTACAAACAAGAACTGGATTGGAGCGCAAACGAGATGCTTCGTCCTTACA 370
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 301 TAGTATCAGCTTACAAACAAGAAGTGGATTGGAGCACAAACGAGATGCTTCGTCCCTACA 360
Query 371 AGAAAATGTTTGAAAGGAGAAAGGTGCAAGTAGAGGTTTT-GTTGCTGGATTCACTTGAG 429
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 361 AGAAAATGTTTGAGAGGAGAAAGGTGCAAGTAGAGGTTTTGGTT-CTGGATTCAAACGAG 419
Query 430 CCTGCAGCCGCGATAGCGGAAGAGATTGCTGGAACTGGAGTCACAAAACTGGTAATAGGA 489
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CCTGCAGCTGCGATAGCGGAAGAGATTTCTGGAACTGGAGTCACAAAACTGGTAATAGGA 479
Query 490 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTTTGATCGCAACAGCT 549
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTATGATCGCAACAGCT 539
Query 550 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 599
Query 610 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 659
Query 670 ACTGATAGTCCTAGACTCCCTCCTGAGTACCAAGACTTTCTCTCCGCT-GTTTCGGAAGC 728
||||||||||| ||||| |||||||||||||||||||||||||| | | ||||||||||
Sbjct 660 ACTGATAGTCCAAGACTTCCTCCTGAGTACCAAGACTTTCTCTC-GTTTGTTTCGGAAGG 718
Query 729 ACAATCCCGAGTCTCTCCTTTTTCTCCTGCTCTGAAACATTCGATGGGAAGCAACGCAGT 788
|||||||||||||||||||||||| ||||||| |||| ||||| ||||||||| ||||||
Sbjct 719 ACAATCCCGAGTCTCTCCTTTTTCCCCTGCTCCGAAAAATTCGTTGGGAAGCAGCGCAGT 778
Query 789 GGCTCAGATGGATACGAGTTCGAGCGGGACGGACCAAGAGGAAGTATCTACGGGGAGAGG 848
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 779 GGTTCAGATGGATACGAGTTCTAGCGGGACGGACCAAGAGGAAGTATCTACTGGGAGAGG 838
Query 849 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 898
Query 909 TTCGTTCCCAATGGGTACAGAGGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 968
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCGTTCCCAATGGGAACGGAAGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 958
Query 969 TCACGAGGATAGGAGAGAGATGAGGAGCTCTTCTTCGAGTAACAACCACGATCTAGTCAA 1028
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 959 TCACGAGGATAGGAGAGAGATCAGGAGCTCTTCTTCGAGCAACAACCACGATCTAGCCAA 1018
Query 1029 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATACTGCCTCTCA 1088
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1019 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATTGTGCCTCTAA 1078
Query 1089 CATGTCTGATGGACTCCTCAGTGTCCATTCTATTACCGATAATCAGGTGAATCTGAACTT 1148
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 CATGTCTGATGGACTCCTCAGTGTCCATTCCATTACCGATAATCAGGTGAATCTGAACTT 1138
Query 1149 TGAGATAGAGAAACTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1208
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGAGATAGAGAAGCTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1198
Query 1209 AACCGAGACTGTTGGTGCTTCAAAAAAGCTGACTGAGCTAAACCAGAGGCGGTTCGAGGA 1268
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 AACCGAGACTGTTGGTGCTTCACAAAAGCTGACTGAGCTAAACCAGAGGCGGTTCGAGGA 1258
Query 1269 ATCCGAGAAGCTTGTGGAACTGAAGGAAAAAGAAGAAGTAGCAAAAGATACAGCTTCAAA 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1259 ATCCGAGAAGCTTGTGGAACTGAAGGAAAAAGAAGAAGTAGCAAAAGATACAGCCTCAAA 1318
Query 1329 GGAGAAGCAAAGGTACGAA-GAGGCGATGAAGGAAGCAGAGAAGGTTAAAGAACTCATGA 1387
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGAGAAGCAAAGGTAC-AACGAGGCGATGAAGGAAGCAGAGAAGGTTAAAGAACTCATGA 1377
Query 1388 TGAAAGAGGCTTTACATAGAAGAGAAGCTGAGTTCAAAGCAGAGCGCGATGCTAGAGAGA 1447
||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1378 TGAGAGAGGCTTTACACAGAAGAGAAGCTGAGATCAAAGCAGAGCGCGACGCTAGAGAGA 1437
Query 1448 AAGATAAGCTCCAGGCTTCTCTCGTCTCTCCCGGGGTCCAATACCAACATTATACCTGGG 1507
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 AAGATAAGCTCCAGGCTTCTCTCGTCTCTCCCGGGATCCAATACCAACATTATACCTGGG 1497
Query 1508 AGGAAATCGCAGCCGCAACTTCTGACTTCGCAGAAAATCTCAAGATTGGAATCGGAGCCT 1567
|||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1498 AGGAAATCACAGCCGCGACTTCTGACTTCGCGGAAAATCTCAAGATTGGAATCGGAGCCT 1557
Query 1568 ATGGATCAGTCTACAAATGTAATCTACATCACACGACCGGTGCTGTCAAGGTCCTTCACG 1627
||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1558 ATGGAACCGTCTACAAATGTAATCTTCATCACACGACTGGTGCTGTCAAGGTCCTTCACG 1617
Query 1628 CTGGAGAAACTCAGCTCTCGAAACAGTTTGATCAAGAGCTTGAGATCTTAAGCAAAATTC 1687
| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 1618 CAGGAGAAACTCAGCTCTCTAAACAGTTTGATCAAGAGCTTGAGATCTTGAGCAAAATCC 1677
Query 1688 GACATCCTCACTTAGTCCTCCTACTAGGGGCGTGTCCCGAACGCGGCTGCCTTGTCTACG 1747
||||||||||| |||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 1678 GACATCCTCACCTAGTCCTCCTCCTTGGGGCATGTCCCGAACGAGGCTGCCTTGTCTACG 1737
Query 1748 AGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACGACACACCACCGA 1807
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1738 AGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACAACACACCACCGA 1797
Query 1808 TCCCTTGGTTTGAGCGTTTCAGGATCGCTTTAGAAGTCGCTTCAGCGCTTGTATTCCTCC 1867
|||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1798 TCCCTTGGTTCGATCGTTTCAGGATTGCATTAGAAGTCGCTTCAGCGCTTGTATTCCTCC 1857
Query 1868 ACAAATCCAAGCCTAGACCAATCATTCACCGTGACCTCAAACCAGGAAACATCTTGCTTG 1927
||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1858 ACAAATCAAAACCTAGACCCATCATTCACCGTGATCTCAAACCAGGAAACATCTTGCTTG 1917
Query 1928 ACCACAACTTCGTCAGCAAACTCGGCGATGTTGGTCTCTCAACAATGGTTAACCAAGACG 1987
|||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 1918 ACCACAACTTCGTCAGCAAACTTGGAGACGTTGGTCTGTCAACAATGGTTAACCAAGACG 1977
Query 1988 ATGTTTCATCTAG---AACTATCTTCAAGCAAACCAGTCCCGTGGGCACGCTCTGTTACA 2044
||| |||||| | ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1978 ATGATTCATCCAATCTAACCATCTTCAAGAAAACCAGTCCCGTGGGCACGCTCTGTTACA 2037
Query 2045 TTGACCCTGAGTATCAGCGAACCGGGATTATCTCACCTAAATCGGATGTGTACTCCCTCG 2104
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2038 TCGACCCTGAGTATCAGCGTACCGGGATTATCTCACCTAAATCAGATGTGTACTCCCTCG 2097
Query 2105 GAGTTGTGATTCTGCAGCTAATAACCGCGAAACCCGCCATAGCGATTACTCATATGGTGG 2164
|| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||
Sbjct 2098 GAATTGTGATTCTGCAGCTATTAACAGCGAAACCCGCGATAGCGATTACTCATATGATGG 2157
Query 2165 AAGAAGCTATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGGGTCTT 2224
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 AAGAAGCGATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGGGTCTT 2217
Query 2225 GGCCCATCAGTGATACTCGTGAGTTAGCCGCTTTGGGACTGTGTTGTACAGAAATGAGAC 2284
||||||||||||| || ||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 2218 GGCCCATCAGTGAGACCCGTGAGTTAGCCGCTTTGGGATTGTGTTGCACGGAAATGAGAC 2277
Query 2285 GCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAGGAAAG 2344
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2278 GCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAAGAAAG 2337
Query 2345 TCGCCGACAAAGCTCAAAACTTGCTTTCGAGAACTCCGTCTGGTCCTCCATCTCATTTCA 2404
| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 2338 TTGCCGACAAAGCTCAAAACTCGCTCTCGAGAACTCCATCTGGTCCTCCATCTCATTTCA 2397
Query 2405 TTTGCCCACTTTTGAAGGGAGTAATGAACGAGCCGTGCGTGGCTGCGGATGGGTACACGT 2464
|||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2398 TTTGCCCACTCGTAAAGGGAGTGATGAACGAGCCGTGCGTGGCTGCGGATGGGTATACGT 2457
Query 2465 ACGATCGGGAAGCTATAGAGGAATGGCTGAGACAGAAAGATACATCACCGGTGACGAATC 2524
|||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||| |
Sbjct 2458 ACGATCGGGAAGCTATAGAGGAATGGCTGAGAGAGAATGATACTTCACCAGTGACGAACC 2517
Query 2525 TTCCATTGCCTAACAAGAACCTTATTGCTAATTACACTCTTTACTCAGCAATCATGGAGT 2584
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2518 TTCCATTGCCTAACAAGAACCTTCTTGCTAATTACACTCTTTACTCAGCAATCATGGAGT 2577
Query 2585 GGAAATCTAATAAAC 2599
|||||||||||||||
Sbjct 2578 GGAAATCTAATAAAC 2592
> Ahg496318 jgi|Araly1|496318|fgenesh2_kg.8__2134__AT5G61550.1
Length=2432
Score = 1943 bits (1052), Expect = 0.0
Identities = 1170/1228 (95%), Gaps = 4/1228 (0%)
Strand=Plus/Plus
Query 11 ACCAAACTTAGGGTTCTTCTTTGTTCTCTGCTTCAACAGAACTACAGGATTAAACAATGG 70
||||||| |||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1 ACCAAACATAGGGTTCTTGTTTGTTCTCTGCTTGAACAGAACTACAAGATTAAACAATGG 60
Query 71 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAACACCTATCACTACCTCCTCCACCATCTC 130
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAGCACCTATCACTACCTCCTCCACCATCTC 120
Query 131 CTTCTGTAGCGGTAGCCATCAACGGGAAGAAGAAGAGCAAATACGTCGTTTTTTGGGCTC 190
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 121 CTTCTGTAGCGGTAGCCATTAATGGGAAGAAGAAGAGCAAATACGTCGCTTTTTGGGCTC 180
Query 191 TTGAGAAGTTTATACCTGAAGGTTTCACTGATTTCAAATTGCTCTATGTTCGTCCTCCTG 250
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TTGAGAAGTTCATACCTGAAGGTTTCACTGATTTCAAATTGCTTTATGTTCGTCCTCCTG 240
Query 251 TCTCTTACATCCCTACCCCAATGGGGATTGCGGTAGCGGTATCAGAGCTTAGAGAGGATG 310
|| ||||||||||||||||||||||| | || || |||||||||||||||| || || |
Sbjct 241 TCAGTTACATCCCTACCCCAATGGGGAATACGATATCGGTATCAGAGCTTAGGGACGACG 300
Query 311 TAGTATCAGCTTACAAACAAGAACTGGATTGGAGCGCAAACGAGATGCTTCGTCCTTACA 370
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 301 TAGTATCAGCTTACAAACAAGAAGTGGATTGGAGCACAAACGAGATGCTTCGTCCCTACA 360
Query 371 AGAAAATGTTTGAAAGGAGAAAGGTGCAAGTAGAGGTTTT-GTTGCTGGATTCACTTGAG 429
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 361 AGAAAATGTTTGAGAGGAGAAAGGTGCAAGTAGAGGTTTTGGTT-CTGGATTCAAACGAG 419
Query 430 CCTGCAGCCGCGATAGCGGAAGAGATTGCTGGAACTGGAGTCACAAAACTGGTAATAGGA 489
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCTGCAGCTGCGATAGCGGAAGAGATTGCTGGAACTGGAGTCACAAAACTGGTAATAGGA 479
Query 490 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTTTGATCGCAACAGCT 549
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTATGATCGCAACAGCT 539
Query 550 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 599
Query 610 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 659
Query 670 ACTGATAGTCCTAGACTCCCTCCTGAGTACCAAGACTTTCTCTCCGCT-GTTTCGGAAGC 728
||||||||||| ||||| |||||||||||||||||||||||||| | | ||||||||||
Sbjct 660 ACTGATAGTCCAAGACTTCCTCCTGAGTACCAAGACTTTCTCTC-GTTTGTTTCGGAAGG 718
Query 729 ACAATCCCGAGTCTCTCCTTTTTCTCCTGCTCTGAAACATTCGATGGGAAGCAACGCAGT 788
|||||||||||||||||||||||| ||||||| |||| ||||| ||||||||| ||||||
Sbjct 719 ACAATCCCGAGTCTCTCCTTTTTCCCCTGCTCCGAAAAATTCGTTGGGAAGCAGCGCAGT 778
Query 789 GGCTCAGATGGATACGAGTTCGAGCGGGACGGACCAAGAGGAAGTATCTACGGGGAGAGG 848
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 779 GGTTCAGATGGATACGAGTTCTAGCGGGACGGACCAAGAGGAAGTATCTACTGGGAGAGG 838
Query 849 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 898
Query 909 TTCGTTCCCAATGGGTACAGAGGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 968
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCGTTCCCAATGGGAACGGAAGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 958
Query 969 TCACGAGGATAGGAGAGAGATGAGGAGCTCTTCTTCGAGTAACAACCACGATCTAGTCAA 1028
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 959 TCACGAGGATAGGAGAGAGATCAGGAGCTCTTCTTCGAGCAACAACCACGATCTAGCCAA 1018
Query 1029 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATACTGCCTCTCA 1088
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1019 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATTGTGCCTCTAA 1078
Query 1089 CATGTCTGATGGACTCCTCAGTGTCCATTCTATTACCGATAATCAGGTGAATCTGAACTT 1148
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 CATGTCTGATGGACTCCTCAGTGTCCATTCCATTACCGATAATCAGGTGAATCTGAACTT 1138
Query 1149 TGAGATAGAGAAACTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1208
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGAGATAGAGAAGCTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1198
Query 1209 AACCGAGACTGTTGGTGCTTCAAAAAAG 1236
|||||||||||| ||||||||| |||||
Sbjct 1199 AACCGAGACTGTGGGTGCTTCACAAAAG 1226
Score = 1755 bits (950), Expect = 0.0
Identities = 1091/1160 (94%), Gaps = 5/1160 (0%)
Strand=Plus/Plus
Query 1444 GAGAAAGATAAGCTCCAGGCTTCTCTCGTCTCTCCCGGGGTCCAATACCAACATTATACC 1503
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1248 GAGAAAGATAAGCT-CAGGCTTCTCTCGTCTCTCCCGGGATCCAATACCAACATTATACC 1306
Query 1504 TGGGAGGAAATCGCAGCCGCAAC-TTCTGACTTCGCAGAAAATCTCAAGATTGGAATCGG 1562
|||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 1307 TGGGAGGAAATCACAGCCGCGACTTTCTGACTTCGCGGAAAATCTCAAGATTGGAATCGG 1366
Query 1563 AGCCTATGGATCAGTCTACAAATGTAATCTACATCACACGACCGGTGCTGTCAAGGTCCT 1622
|||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1367 AGCCTATGGAACCGTCTACAAATGTAATCTTCATCACACGACTGGTGCTGTCAAGGTCCT 1426
Query 1623 TCACGCTGGAGAAACTCAGCTCTCGAAACAGTTTGATCAAGAGCTTGAGATCTTAAGCAA 1682
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1427 TCACGCAGGAGAAACTCAGCTCTCTAAACAGTTTGATCAAGAGCTTGAGATCTTGAGCAA 1486
Query 1683 AATTCGACATCCTCACTTAGTCCTCCTACTAGGGGCGTGTCCCGAACGCGGCTGCCTTGT 1742
||| |||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 1487 AATCCGACATCCTCACCTAGTCCTCCTCCTTGGGGCATGTCCCGAACGAGGCTGCCTTGT 1546
Query 1743 CTACGAGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACGACACACC 1802
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1547 CTACGAGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACAACACACC 1606
Query 1803 ACCGATCCCTTGGTTTGAGCGTTTCAGGATCGCTTTAGAAGTCGCTTCAGCGCTTGTATT 1862
||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1607 ACCGATCCCTTGGTTCGATCGTTTCAGGATTGCATTAGAAGTCGCTTCAGCGCTTGTATT 1666
Query 1863 CCTCCACAAATCCAAGCCTAGACCAATCATTCACCGTGACCTCAAACCAGGAAACATCTT 1922
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1667 CCTCCACAAATCCAAACCTAGACCCATCATTCACCGTGATCTCAAACCAGGAAACATCTT 1726
Query 1923 GCTTGACCACAACTTCGTCAGCAAACTCGGCGATGTTGGTCTCTCAACAATGGTTAACCA 1982
||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 1727 GCTTGACCACAACTTCGTCAGCAAACTTGGAGACGTTGGTCTGTCAACAATGGTTAACCA 1786
Query 1983 AGACGATGTTTCAT-C--TAGAACTATCTTCAAGCAAACCAGTCCCGTGGGCACGCTCTG 2039
|||||||| ||||| | | ||| ||||||||| |||||||||||||||||||||||||
Sbjct 1787 AGACGATGATTCATCCAATCTAACCATCTTCAAGAAAACCAGTCCCGTGGGCACGCTCTG 1846
Query 2040 TTACATTGACCCTGAGTATCAGCGAACCGGGATTATCTCACCTAAATCGGATGTGTACTC 2099
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1847 TTACATCGACCCTGAGTATCAGCGTACCGGGATTATCTCACCTAAATCAGATGTGTACTC 1906
Query 2100 CCTCGGAGTTGTGATTCTGCAGCTAATAACCGCGAAACCCGCCATAGCGATTACTCATAT 2159
||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 1907 CCTCGGAATTGTGATTCTGCAGCTATTAACAGCGAAACCCGCGATAGCGATTACTCATAT 1966
Query 2160 GGTGGAAGAAGCTATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGG 2219
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GATGGAAGAAGCGATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGG 2026
Query 2220 GTCTTGGCCCATCAGTGATACTCGTGAGTTAGCCGCTTTGGGACTGTGTTGTACAGAAAT 2279
|||||||||||||||||| || ||||||||||||||||||||| ||||||| || |||||
Sbjct 2027 GTCTTGGCCCATCAGTGAGACCCGTGAGTTAGCCGCTTTGGGATTGTGTTGCACGGAAAT 2086
Query 2280 GAGACGCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAG 2339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 GAGACGCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAA 2146
Query 2340 GAAAGTCGCCGACAAAGCTCAAAACTTGCTTTCGAGAACTCCGTCTGGTCCTCCATCTCA 2399
|||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 2147 GAAAGTTGCCGACAAAGCTCAAAACTCGCTCTCGAGAACTCCATCTGGTCCTCCATCTCA 2206
Query 2400 TTTCATTTGCCCACTTTTGAAGGGAGTAATGAACGAGCCGTGCGTGGCTGCGGATGGGTA 2459
||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2207 TTTCATTTGCCCACTCGTAAAGGGAGTGATGAACGAGCCGTGCGTGGCTGCGGATGGGTA 2266
Query 2460 CACGTACGATCGGGAAGCTATAGAGGAATGGCTGAGACAGAAAGATACATCACCGGTGAC 2519
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct 2267 TACGTACGATCGGGAAGCTATAGAGGAATGGCTGAGAGAGAATGATACTTCACCAGTGAC 2326
Query 2520 GAATCTTCCATTGCCTAACAAGAACCTTATTGCTAATTACACTCTTTACTCAGCAATCAT 2579
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2327 GAACCTTCCATTGCCTAACAAGAACCTTCTTGCTAATTACACTCTTTACTCAGCAATCAT 2386
Query 2580 GGAGTGGAAATCTAATAAAC 2599
||||||||||||||||||||
Sbjct 2387 GGAGTGGAAATCTAATAAAC 2406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102424668805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5