BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61560.1
Length=2901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496321 jgi|Araly1|496321|fgenesh2_kg.8__2137__AT5G61560.1 4470 0.0
> Ahg496321 jgi|Araly1|496321|fgenesh2_kg.8__2137__AT5G61560.1
Length=2882
Score = 4470 bits (2420), Expect = 0.0
Identities = 2749/2905 (95%), Gaps = 34/2905 (1%)
Strand=Plus/Plus
Query 1 ATCATTACTTCTTTGAATCTTTGGTTATAACCATTAAAGAATTCAACTGGTATGCGCATA 60
||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 1 ATCATTACTTCTTTGAATCTTTGGTTATATCCATAAAAGAATTCAACTGGTTTGCGCATA 60
Query 61 AATTTCCGCATAACTCCATTAATATAATCAGGAGACCAATTCACTGGACTCAAATTTGAT 120
|||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 61 AATTTCCGTATAACTCCATTAATTTAATCA-GAGACAAATTCACTGGACTCAAATTTGAT 119
Query 121 TCGtcttcttcttctctctctctctcCATTTGTCAAGAAGCTGTTGAATCATCGTCCCCC 180
|||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 120 TCGTCTTCTTCTTCTCTCTCTCTCTCCATTTGTCAAGAAGCTGTTG-A--A---T----C 169
Query 181 ACGAGTTTTGGAAAAAGC-TTGCAAGTCAAATATCAATAGCACGACTAGAGATTAAGGAA 239
| ||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 170 A--AGTTTTGGAAAAAGCTTTG-AAGTCAAATATCAATAGCACGACGAGAGATTAAGGAA 226
Query 240 ACAAAAGCTTGAACCTTTGTAGTCAAAATCA-TCAGATCTTAGCCGTTGGAAATCCAGAG 298
|||||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||||||
Sbjct 227 ACAAAAGCTTCAACCTTTGAAGTCAAAAT-ACTCAGATCTTAGCCGTTGAAAATCCAGAG 285
Query 299 ATGGGAGACGGAGCTTTAATCGTAGCGGTGGCTATCAAAGGGAACAATAGCAAAACCAAA 358
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 286 ATGGGAGATGGAGCTTTAATCGTAGCGGTGGCTATTAAAGGGAACAATAGCAAAACCAAA 345
Query 359 GGCGTTGTTCGATGGGCACTTCAAGAATTTGCTTCTCAAGAACATGTCGTCTTCAAGCTC 418
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 346 GGCGTTGTTCGATGGGCACTTCAAGAATTCGCTTCTCGAGAACATGTCGTCTTCAAGCTC 405
Query 419 TTACATGTCCAACCAAGAGATTCGAATTCGGTTTCAACTACAAGAAAAGATTTGACCACA 478
||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 406 TTACATGTCCAACCAAGAGATTCGAATACGGTTTCGACTACAAGAAAAGATTCCACCACA 465
Query 479 AGTGTTTACAAAAAAGATGTTGATAGAAAAACCAGAGAGATGCTTCTTCCAAGCAGAGAC 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 AGTGTTTACAAGAAAGATGTTGATAGAAAAACCAGAGAGATGCTTCTTCCAAGCAGAGAC 525
Query 539 ATGTTTGTTCATAGAGAGGTTCAATTGGATATAATGGTGCTTGAATCAGACGATATAGCT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 526 ATGTTTGTTCATAGAGAGGTTCAATTGGATATAATGGTGCTTGAATCAGACGATGTAGCT 585
Query 599 GATGCAATCTCTAAAGCAGTTCAAGATCATGGAATTAGTGAGCTAGTCATTGGAGCTTCC 658
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GATGCAATCTCTAAAGCGGTTCAAGATCATGGAATTAGTGAGCTAGTCATTGGAGCTTCT 645
Query 659 TCTTCAATCATCTTCTCATGGAAGTTGAAGAGAAGCAACTTGTCTTCAAGAATTGCAGAT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 646 TCTTCAATCATCTTCTCATGGAAGTTGAAGAGAAGCAACTTGTCTTCAAGAATTTCAGAT 705
Query 719 GCTACACCAAGATTTTGCTCAGTTCATGTTATCTCTAAAGGAAAGCTTCTCAATGTTCGT 778
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 706 GCTACACCAAGATTTTGCACAATTCACGTTATCTCTAAAGGAAAGCTTCTCAATGTTCGT 765
Query 779 AAATCCGATATGGACACCGAAACGAGCATTGCAGACGATAGAAGCGAAAGCCGGTTCTCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AAATCCGATATGGACACCGAAACGAGCATTGCAGACGATAGAAGCGAAAGCCGGTTCTCT 825
Query 839 TCAGATAGCCATTCAGGAACAGTAAGTTCGACATCGAGTCATCAATTCTCATCAACACCT 898
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 826 TCAGATAGTCATTCAGGATCAGTAAGTTCGACATCGAGTCATCAATTCTCATCAAAACCT 885
Query 899 TTACTCTTCCAACGAATCCAAGCCCTAACAACCGTGAACCAGAAGGTTGGAACAAACATT 958
|||||||||||| || ||||||| || ||||||| ||||||||||||||||| ||||||
Sbjct 886 TTACTCTTCCAAAGAGTCCAAGCACTTTCAACCGTCAACCAGAAGGTTGGAACCAACATT 945
Query 959 GGAAAACAGAACAATGAACCGCATCATCATCATCATAACAGAGCTGGGTCTCTAGACGTG 1018
||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
Sbjct 946 GGAAAACAGAACAATGATCAGCATCATCATCATCATAACAGAGCCGGGTCTCTAGACGAG 1005
Query 1019 GATGAATCAAAGTTACTGAACCAGAAGGGCTTTTATCGAACAAGCAGCTCCGGAATCGGG 1078
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 1006 GATGAATCAAAGTTACTGAACCAGAAGGGCTTTTACCGAACAAGCAGCTCGGGCATTGGG 1065
Query 1079 TATGGAGGAAGTGATATCAGTAGCTGGAGAAGCTCTCAGATGGAAGAGGCTTCAAGCTCA 1138
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TATGGAGGAAGCGATATCAGCAGCTGGAGAAGCTCTCAGATGGAAGAGGCTTCAAGCTCA 1125
Query 1139 AGTACCTACAGTGACCCTACTTCATCTAGTAGCCAGATACA-TAAAGACTTTGAGTTAGA 1197
|||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1126 AGTACCTACAGTGACCCTACTTCATCTAGTAGCCAGGC-CAATAAAGACTTTGAATTAGA 1184
Query 1198 GAAGCTGAAGATTGAACTCCGTCACATTAAAGGAATGTATGCAGTTGCTCAAAGCGAAGT 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 GAAGCTGAAGATTGAACTCCGTCACATTAAAGGAATGTATGCAGTTGCTCAAGGCGAAGT 1244
Query 1258 CATCGATGCTTCTAAAAAGATGCAAGATCTGAACCAGCGGCGATCAGAGGAAGCTACAAG 1317
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1245 CATTGATGCTTCTAAAAAGATGCAAGATCTGAACCAGCGGCGATCAGAGGAAGCTATGAG 1304
Query 1318 GCTCAAGAACTTAACGATAAGAGAAGAAGAAGCGGATGAAGTGGTGGAAATGGAGAGGGA 1377
||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |||
Sbjct 1305 GCTCAAGAACTTAACGATAAGAGAAGAAGAAGCTGATGAAGTGGTAGAGATGGAAAAGGA 1364
Query 1378 GAGACAAGAGGATGCGGAAAACGAAGCTGAGCTCGTGAGAGAATGCATTgagagagaaac 1437
|||||||||||| |||||||| || |||||||| |||| |||||||||||||||||||||
Sbjct 1365 GAGACAAGAGGAAGCGGAAAATGAGGCTGAGCTTGTGAAAGAATGCATTGAGAGAGAAAC 1424
Query 1438 cgaagagagacttgaggcggaagcaagagcggaagaggttagaaaagagaagCAGAGGTT 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1425 CGAAGAGAGACTTGAGGCGGAAGCAAGAGCGGAAGAGGTTAGAAAAGAGAAGCAGAGGCT 1484
Query 1498 AGAGGATGCACTTGAAGGTGGACCGCTTCAACGCCAACAATACATGAAATTTGAGTGGGA 1557
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 AGAGGATGCACTTGAAGGCGGACCGCTTCAACGCCAACAATACATGAAATTTGAGTGGGA 1544
Query 1558 AGAGATCGTCGAGGCGACGTCATCTTTCTCGGATGAACTT-AAGATCGGAGTCGGTGGTT 1616
|||||||||| ||||||||||||| ||||| ||||| ||| ||||||||||| || ||||
Sbjct 1545 AGAGATCGTCAAGGCGACGTCATCCTTCTCCGATGA-CTTTAAGATCGGAGTGGGCGGTT 1603
Query 1617 ACGGAAGCGTATATAGGTGTAACTTGCATCACACGACAGTAGCTGTCAAGGTTCTTCATT 1676
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 ACGGAAGCGTATATCGGTGTAACTTGCATCACACGACAGTAGCTGTCAAGGTTCTTCATT 1663
Query 1677 CAGACAAAAGTAGTTTAACCAAACAGTTTCACCAAGAGCTTGAGATTCTTAGCAAGATTC 1736
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 CAGACAAAAGTAGCTTAACCAAACAGTTTCACCAAGAGCTTGAGATTCTTAGCAAGATTC 1723
Query 1737 GTCATCCACACTTGCTTCTCCTCCTAGGCGCGTGTCCTGAACGCGGAAGCTTAGTTTACG 1796
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1724 GTCACCCACACTTGCTTCTCCTCCTAGGCGCGTGTCCTGAACGCGGCAGCTTAGTCTACG 1783
Query 1797 AGTATATGCACAACGGAAGCCTTGAGGAAAGACTCATGAAACGCCGACCAAACGTTGACA 1856
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1784 AGTATATGCACAACGGAAGCCTCGAGGAAAGACTCATGAAACGCCGACCAAACGTTGACA 1843
Query 1857 CACCGCAACCGCCGCCATTACGGTGGTTCGAGCGGTTCCGAATCGCTTGGGAGATCGCTT 1916
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1844 CACCGCAACCACCGCCGTTACGGTGGTTCGAGCGGTTCCGAATCGCTTGGGAGATTGCTT 1903
Query 1917 CAGCACTCTACTTTCTCCACACAAACGAACCAAGACCAATCGTTCACCGCGATCTTAAAC 1976
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1904 CAGCTCTCTACTTTCTCCACACAAACGAACCAAGACCAATCGTTCACCGAGATCTTAAAC 1963
Query 1977 CAGCCAATATCCTCCTAGACCGGAACAATGTGAGCAAAATCGGAGACGTAGGCCTTTCCA 2036
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1964 CGGCCAATATACTCCTAGACCGGAACAATGTGAGCAAAATCGGAGACGTAGGCCTCTCCA 2023
Query 2037 AAATGGTTAATCTTGATCCTTCTCATGCCTCAACGGTTTTCAACGAAACCGGTCCAGTTG 2096
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2024 AAATGGTTAATCTTGATCCTTCTCATGCCTCAACGGTTTTCAACGAAACCAGTCCAGTTG 2083
Query 2097 GAACATTCTTCTACATAGATCCTGAATACCAAAGAACCGGAGTGGTAACTCCCG-AATCT 2155
|||||||||||||||| ||||| |||||||||||||||||||| ||||| |||| |||||
Sbjct 2084 GAACATTCTTCTACATTGATCCCGAATACCAAAGAACCGGAGTCGTAAC-CCCGGAATCT 2142
Query 2156 GATATCTACGCGTTTGGAATCATACTTCTTCAGCTAGTCACAGCTAGATCCGCGATGGGT 2215
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2143 GATATTTACGCGTTTGGAATCATACTTCTTCAGCTAGTCACAGCTAGATCCGCCATGGGA 2202
Query 2216 TTGGCTCATTCGATAGAGAAAGCGTTGAGAGATCAAACCGGGAAATTTACAGAGATCTTG 2275
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2203 TTGGCTCATACGATAGAGAAAGCTTTAAGAGATCAAACCGGGAAATTTACAGAGATCTTG 2262
Query 2276 GATAAAACTGCTGGAGATTGGCCGGTTAAGGAAGCTAAAGAGATGGTTATGATAGGGCTT 2335
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2263 GATAAAACTGCTGGAGATTGGCCGGTTAAGGAAGCGAAAGAGATGGTTATGATAGGACTT 2322
Query 2336 AGATGTGCAGAGATGAGAAAGCGTGATCGTCCTGATTTAGGGAAAGAGATTTTGCCGGTT 2395
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2323 AGATGTGCGGAGATGAGAAAGCGTGATCGTCCTGATTTAGGGAAAGAAATTTTGCCGGTT 2382
Query 2396 CTTGAACGGTTAAAGGAAGTTGCGTCTATCGCAAGGAACATGTTTGCTGATAACCTAATT 2455
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 2383 CTTGAACGGTTAAAGGAAGTTGCGTCTAACGCAAGAAACATGTTTGCTGATAACGTAATT 2442
Query 2456 GATCATCACCATAACGCTCCGACCCATTTCTACTGTCCAATAACAAAGGATGTGATGGAG 2515
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2443 GATCATCACCATAACGCTCCGAACCATTTCTACTGTCCAATAACAAAGGATGTGATGGAG 2502
Query 2516 AATCCATGTGTTGCTTCGGATGGATATACGTATGAGAAGAGAGCGATTAAGGAATGGCTT 2575
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2503 AATCCATGTGTTGCTTCGGATGGATACACGTATGAGAAGAGAGCGATTAAGGAATGGCTT 2562
Query 2576 CAGAAGAATCATAAATCTCCAATGACGGATTTGCCCTTTCCTAGTGATTCTCTTCTTCCT 2635
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 2563 CAGAAGAATCATAAATCTCCAATGACGGATTTGCCCTTCCCTAATCATTCTCTTCTTCCT 2622
Query 2636 AATCATTCTCTTCTTTCTGCAATCAAGGAGTGGAGATCACAACTAATTAAATAAATTAAT 2695
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2623 AATCATTCTCTTCTTTCTGCAATTAAGGAGTGGAGATCAC---TAATTAAATAAATTAAT 2679
Query 2696 TAAAGGTTC----TTAAATTTATACGGCTAAATTCGTCAATTAACATGAATCGTTGTGGT 2751
||||||||| || ||||| || |||||||||| ||| |||||||| || |||||| |
Sbjct 2680 TAAAGGTTCAAGGTTTAATTTGTAGGGCTAAATTCATCAGTTAACATGCATTGTTGTGTT 2739
Query 2752 TTTTGTTTT-GTCATACCATTCTTGCGCACAAACGTTGATGAAATATTCGAGCTTTTGTG 2810
|||| |||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 2740 TTTTTTTTTTGTCATACCATTCTTGCCCACAAACGTTGATGAAATACTCGAGTTTTTGTG 2799
Query 2811 TGTAAAttttttttACCTTATTTGTTTGATTGTATTATAGGTTTTGACTGCATATTTGCA 2870
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2800 TGTAAATTTTTTT-ACCTTATTTGTTTGATTGTATTATAGGTTTTGGCTGCACATTTGCA 2858
Query 2871 AG-AAGAATATAATAGTGTTGATTT 2894
|| || || ||||||||||||||||
Sbjct 2859 AGGAAAAA-ATAATAGTGTTGATTT 2882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109509454375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5