BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61570.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332399 jgi|Araly1|332399|fgenesh1_pm.C_scaffold_8001742 1351 0.0
Ahg487599 jgi|Araly1|487599|fgenesh2_kg.6__733__AT5G07620.1 577 1e-163
> Ahg332399 jgi|Araly1|332399|fgenesh1_pm.C_scaffold_8001742
Length=1029
Score = 1351 bits (731), Expect = 0.0
Identities = 871/938 (93%), Gaps = 12/938 (1%)
Strand=Plus/Plus
Query 161 ATGAGAAAATCCCATTTGGTAAAACTGATACTTGCAGTATCTCTACCAACAACATTCTTG 220
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGAAAATCCCATTTGGTAAAACTGATACTTGCAGTATCTCTGCCAACAACATTCTTG 60
Query 221 ATCATGATCGCCATCATCATAATCTTCATCTTCTGTAGAAGAACAACAACAGAGACCAAT 280
||||| ||||| ||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 61 ATCATAATCGCTATCATCATAATCTTCATCTTCTGCAGAAGAAGAAAAACAGAGACCAAT 120
Query 281 GAAGTTCAATACGACGTCGAATCTCC-T-T-ACGAGAAACAAGAATTTTCCGATAACGGA 337
|||| ||||||| ||||||||||||| | | | |||||| ||| ||||| | ||||
Sbjct 121 GAAGCTCAATACAACGTCGAATCTCCTTATGATGAGAAAGAAG-ATTTT----T-CCGGA 174
Query 338 TCCGAAACAGAGGAGGAGCTTATCATCTTCAACGGTGGAGAAGATCTAACGATCTGCGAT 397
||||||||||||||||||||| | ||||| ||||||||||| |||||||| ||||| |||
Sbjct 175 TCCGAAACAGAGGAGGAGCTTGTAATCTTAAACGGTGGAGACGATCTAACCATCTGTGAT 234
Query 398 ATACTCGATGCTCCAGGAGAAGTCATCGGAAAATCAAGCTACGGTACATTATACAAAGCG 457
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATCCTTGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACATTATACAAAGCG 294
Query 458 ACGTTACAAAGAAGTGGGAAAGTTAGAGTTCTTAGGTTCCTTCGACCTTTATGTGCTGTG 517
||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 295 ACGTTGCAGAGAAGTGGGAAAGTTAGGGTTCTTAGATTCCTTCGACCTTTGTGTGCAGTG 354
Query 518 AATTCAGATTCTAAGGAGTTTAATGGCGTCATTGAGTCACTTGGGTTTGTTCGACATGAT 577
|| || ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 355 AAATCGGATGCTAAGGAGTTTAATGGCGTCATTGAGTCGCTTGGATTTGTTCGACATGAT 414
Query 578 AATCTCGTTCCTCTGTTAGGGTTTTACGTTGGCAACAGAGGAGAGAAGCTTATGATTCAT 637
||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 415 AATTTGGTTCCTCTGTTAGGGTTTTATGTTGGGAACAGAGGAGAGAAGCTTATGATTCAT 474
Query 638 CCCTTCTTCGGTAGTTCCGGGAATCTTTCTGCGTTCATCAAATTTTTGGCAGGTGGAGAT 697
|| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 475 CCTTTCTT---TGGTTCCGGGAATCTTTCTGAGTTCATCAAATTTTTGGCAGGTGGAGAT 531
Query 698 GTTGACGCACACAAATGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAGCTCTT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTGACGCACACAAATGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAGCTCTT 591
Query 758 GATCATCTCCATACAGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGAAAAAT 817
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GATCATCTCCACACGGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGAAAAAT 651
Query 818 GTTCTACTAGACAAGAGTTTTAGGCCTAGAGTCTCTGATTTCGGCTTGCATTTGCTTTTG 877
||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 652 GTTCTTCTAGACCAGAGTTTTAGGCCTAGAGTCTCTGATTTCGGTTTGCATTTGCTCTTG 711
Query 878 AACCTTGCAGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGTTACAAAGCGCCT 937
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 712 AACCTCGCGGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGATACAAAGCGCCT 771
Query 938 GAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTATATAGTTTCGGTGTGATC 997
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 772 GAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTGTATAGTTTCGGTGTGATC 831
Query 998 ATGCTTGAGTTAGTCTCTGGTAAAGAGCCGACAAACAAGAATCCAACGGGATCTGTACTT 1057
||||||||||||||||||||||||||||| | |||||||||||||| ||| ||| | |||
Sbjct 832 ATGCTTGAGTTAGTCTCTGGTAAAGAGCCAATAAACAAGAATCCAAAGGGTTCTATTCTT 891
Query 1058 GATCGTAATAGGTTGTCGGATTTGTACCGTCCTGAGAT 1095
|||| |||||||||||||||||||||||||||||||||
Sbjct 892 GATCATAATAGGTTGTCGGATTTGTACCGTCCTGAGAT 929
> Ahg487599 jgi|Araly1|487599|fgenesh2_kg.6__733__AT5G07620.1
Length=1089
Score = 577 bits (312), Expect = 1e-163
Identities = 591/720 (82%), Gaps = 41/720 (6%)
Strand=Plus/Plus
Query 341 GAAACAGAGGAGGAGCT--TATCATCTTCAACGGTGGAGAAGATCTAACGATCTGCGATA 398
||||||||||| | || |||| | ||||| || ||||||||||| |||||||||||||
Sbjct 175 GAAACAGAGGA--A-CTCGTATCCT-TTCAA-GGCGGAGAAGATCTCACGATCTGCGATA 229
Query 399 TACTCGATGCTCCAGGAGAAGTCATCGGAAAATCAAGCTACGGTACATTATACAAAGCGA 458
| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 230 TCCTCGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACTTTGTACAAAGCGT 289
Query 459 CGTTACAAAGAAGTGGGAA-AGTTAGAGTTCTTAGGTTCCTTCGACCTTTATGTGCTGTG 517
| || ||| |||| || || | |||| |||||||| || ||| |||| | ||| | |||
Sbjct 290 CTTTGCAACGAAGCGGCAAGA-TTAGGGTTCTTAGATTTCTTAGACCGGTGTGTACAGTG 348
Query 518 A-ATTCAGATTCTAAGGAGTTTAATGGCGTCATTGAGTCACTTGGGTTTGTTCGACATGA 576
| || | |||||||| |||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 349 AGAT-CGGATTCTAAAGAGTTTAATGGCATCATCGAGACACTTGGGTTTGTTCGACATGA 407
Query 577 TAATCTCG-TTCCTCTGTTAGGGTTT-TACGTTGGCAACAGAGGAGAGAAGCTTATGATT 634
|| || | ||||||||||||| ||| |||| ||| ||||||||||||||||||||| ||
Sbjct 408 GAA-CTTGGTTCCTCTGTTAGG-TTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTT 465
Query 635 CATCCCTTCTTCGGTAGTTCCGGGAATCTTTCTG-CGTTCATCAAATTTTTGGCAGGTGG 693
||||| ||||||||| | ||||||||||||| | | ||||||| | || |||
Sbjct 466 CATCCTTTCTTCGGT--T-CCGGGAATCTTTCCGAC-TTCATCAGA--------AG-TGG 512
Query 694 AGATGT-TGACGCACACAAA-TGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAA 751
|||| | ||| || | ||| |||| || ||||| || ||||| ||||||||| | | |
Sbjct 513 AGAT-TATGAATCA-AGAAAATGGATTAATATTTTAAGAATCACAATTGGAATATCTACA 570
Query 752 GCTCTTGATCATCTCCATACAGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCG 811
||||||||| ||||||| ||||||||||||||||| || || || || |||||||||||
Sbjct 571 GCTCTTGATTATCTCCACACAGGAATGCAGAAACCAATCGTCCATGGCAATCTGAAGTCC 630
Query 812 AAAAATGTTCTACT-AGA-CAAGAGTTTT-AGGCCTAGAGTCTCTGATTTCGGCTTGCAT 868
|| || ||||| || || | |||||| | ||| || ||||||||||||| ||||||
Sbjct 631 AAGAACGTTCTTCTGAGTTC--GAGTTTCGAA-CCTCGAATCTCTGATTTCGGTTTGCAT 687
Query 869 TTGCTTTTGAACCTTGCAGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGTTAC 928
||||| |||||||| || || || |||||| |||| || | ||| || || ||||| |||
Sbjct 688 TTGCTCTTGAACCTAGCTGCAGGACAAGAGATTCTTGATGTTTCTGCAGCTGAGGGATAC 747
Query 929 AAAGCGCCTGAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTATATAGT-TT 987
||||| |||||||| || |||||||||||||| ||||| ||||||||||| |||||| ||
Sbjct 748 AAAGCTCCTGAGTTAATAAAGATGAAGGAAGTGAGCAAAGAGAGTGATGTGTATAGTCTT 807
Query 988 CGGTGTGATCATGCTTGAGTTAGTCTCTGGTAAAGAGCCGACAAACAAGAATCCAACGGG 1047
|||||||||||||||||| |||||||||| ||||| |||| |||| |||||||||||||
Sbjct 808 -GGTGTGATCATGCTTGAGCTAGTCTCTGGGAAAGAACCGATAAACGAGAATCCAACGGG 866
Score = 141 bits (76), Expect = 2e-32
Identities = 158/195 (81%), Gaps = 15/195 (8%)
Strand=Plus/Plus
Query 1050 CTGTACTTGATCGTAATAGGTTGTCGGATTTGTACCGTCCTGAGATTATTAGGAGATGTC 1109
|||| ||||||| |||||||||| ||||| ||||||||||||||||| | || | |
Sbjct 905 CTGTTCTTGATC---ATAGGTTGTCTGATTTATACCGTCCTGAGATTATCA-GA-A-G-- 956
Query 1110 TGAAGGATGGAAATGGTGTGACCGAAGAGTGTGTCCTCGAGTACTTTCAGCTTGCAATGT 1169
| ||| | || | ||| ||||| ||||||||| |||| ||||||||||||||||
Sbjct 957 T----GAT-G--ATCATCTGAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGT 1009
Query 1170 CTTGTTGCTCTCCATCGCCTACTCTTAGGCCGAGCTTCAAGCAAGTATTGAGGAAGCTTG 1229
||||||||||||| |||||| |||||||||| | | |||| ||||| |||||||| ||||
Sbjct 1010 CTTGTTGCTCTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTG 1069
Query 1230 AAGAGATCAGGAAAT 1244
||||||| ||||||
Sbjct 1070 AAGAGATTGGGAAAT 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5